Expression of 1-1-6.1.9.8

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.854460.389
27DAP/17DAP0.695530.081
39DAP/27DAP0.61990.255
41DAP/39DAP0.668090.125
42DAP/41DAP1.042780.974
43DAP/42DAP1.134611
47DAP/43DAP0.704440.2
52DAP/47DAP1.064690.957
57DAP/52DAP1.824350.912

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.973020.526
17DAP/reference0.96760.536
27DAP/reference1.118430.205
39DAP/reference1.022760.722
41DAP/reference0.891630.267
42DAP/reference0.897460.034
43DAP/reference0.902190.088
47DAP/reference0.877230.023
52DAP/reference0.740490.047
57DAP/reference1.071460.379

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.334830.036
27DAP/17DAP0.912550.724
39DAP/27DAP0.659880.056
41DAP/39DAP0.996251
42DAP/41DAP0.970740.734
43DAP/42DAP0.770870.049
47DAP/43DAP0.878590.254
52DAP/47DAP1.160970.519
57DAP/52DAP0.872380.391
57DAP/7DAP0.831031

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.178820.141
17DAP/reference1.07380.244
27DAP/reference0.992640.656
39DAP/reference1.246440.114
41DAP/reference0.949050.375
42DAP/reference1.04170.889
43DAP/reference0.982450.48
47DAP/reference0.995561
52DAP/reference0.949720.332
57DAP/reference1.070870.831

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.158210.424
17DAP/reference0.972880.499
27DAP/reference0.795040.049
39DAP/reference0.6610.015
41DAP/reference0.774890.061
42DAP/reference0.970450.482
43DAP/reference0.826520.043
47DAP/reference0.869220.075
52DAP/reference0.894190.101
57DAP/reference0.861420.194

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.39450.172
17DAP/reference1.360.136
27DAP/reference1.212730.072
39DAP/reference1.128720.157
41DAP/reference1.066630.692
42DAP/reference1.019751
43DAP/reference0.858680.12
47DAP/reference1.017050.966
52DAP/reference0.904380.319
57DAP/reference1.193590.279

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.166950.966
26DAP/20DAP1.136540.689
34DAP/26DAP1.048091
51DAP/34DAP1.198850.159
52DAP/51DAP1.082190.616
53DAP/52DAP0.610270.049
55DAP/53DAP0.451930.017
57DAP/55DAP0.927270.638
62DAP/57DAP1.717230.015
68DAP/62DAP0.870950.609
68DAP/14DAP0.679420.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.245470.019

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.020830.666
Mature Green Tomato/Ripe Tomato5.382330.015
Immature Eggplant/Mature Eggplant0.393910.063
Ripe Pepper/Ripe Tomato10.96210.258
Mature Eggplant/Ripe Tomato6.868020.268

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.44796
1-1-2/M820.903220.958
12-2/M820.81199
12-4/M820.933371
1-3/M821.158190.277
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M820.96582
3-2/M820.88936
4-1-1/M82N/AN/A
4-1/M821.001151
4-3-2/M82N/AN/A
4-3/M821.3836
5-3/M821.102891
6-2/M82N/AN/A
6-3/M820.99061
7-1/M820.863051
7-2/M821.30074
9-3-2/M821.42438

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.865770.243
IL2-6/WTpooled0.959490.348
IL7-5/WTpooled0.987451
IL7-3/WTpooled1.009561
IL12-4/WTpooled1.169360.673
IL1-4/WTpooled0.906010.834
WT/WTpooled1.05151

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.062331

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.88760.941
DC3000/delta hrp 6h0.951040.95
DC3000/delta hrp 12h1.225281
DC3000/delta hrp 24h0.544960.034

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.586140.025
DC3000 delta B/DC3000 delta AB0.604090.02

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.852261
Exp 36h0.806180.504
Exp 60h0.658040.343

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.967251
Var 0h1.057580.421
Var 12h I row2-row10.689220.338
Var 12h NI row2-row10.960010.546
Var 36h I row2-row10.928371
Var 36h NI row2-row11.262440.482
Var 60h I row2-row11.232941
Var 60h NI row2-row11.176330.904
Time course 0hI-0hNI0.945690.54
Time course 12hI-12hNI1.072970.572
Time course 36hI-36hNI0.954590.306
Time course 60hI-60hNI0.147970.005

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.120660.347
transgenic ySAMdc/azygous control (breaker)1.243840.172
transgenic ySAMdc/azygous control (red)1.737660.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.939960.052

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.400410.239

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)5.217870.083
Manapal/WT (break)5.728710.123
Manapal/WT (red)5.900210.137