Expression of 1-1-6.1.9.8
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.85446 | 0.389 |
27DAP/17DAP | 0.69553 | 0.081 |
39DAP/27DAP | 0.6199 | 0.255 |
41DAP/39DAP | 0.66809 | 0.125 |
42DAP/41DAP | 1.04278 | 0.974 |
43DAP/42DAP | 1.13461 | 1 |
47DAP/43DAP | 0.70444 | 0.2 |
52DAP/47DAP | 1.06469 | 0.957 |
57DAP/52DAP | 1.82435 | 0.912 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97302 | 0.526 |
17DAP/reference | 0.9676 | 0.536 |
27DAP/reference | 1.11843 | 0.205 |
39DAP/reference | 1.02276 | 0.722 |
41DAP/reference | 0.89163 | 0.267 |
42DAP/reference | 0.89746 | 0.034 |
43DAP/reference | 0.90219 | 0.088 |
47DAP/reference | 0.87723 | 0.023 |
52DAP/reference | 0.74049 | 0.047 |
57DAP/reference | 1.07146 | 0.379 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.33483 | 0.036 |
27DAP/17DAP | 0.91255 | 0.724 |
39DAP/27DAP | 0.65988 | 0.056 |
41DAP/39DAP | 0.99625 | 1 |
42DAP/41DAP | 0.97074 | 0.734 |
43DAP/42DAP | 0.77087 | 0.049 |
47DAP/43DAP | 0.87859 | 0.254 |
52DAP/47DAP | 1.16097 | 0.519 |
57DAP/52DAP | 0.87238 | 0.391 |
57DAP/7DAP | 0.83103 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.17882 | 0.141 |
17DAP/reference | 1.0738 | 0.244 |
27DAP/reference | 0.99264 | 0.656 |
39DAP/reference | 1.24644 | 0.114 |
41DAP/reference | 0.94905 | 0.375 |
42DAP/reference | 1.0417 | 0.889 |
43DAP/reference | 0.98245 | 0.48 |
47DAP/reference | 0.99556 | 1 |
52DAP/reference | 0.94972 | 0.332 |
57DAP/reference | 1.07087 | 0.831 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.15821 | 0.424 |
17DAP/reference | 0.97288 | 0.499 |
27DAP/reference | 0.79504 | 0.049 |
39DAP/reference | 0.661 | 0.015 |
41DAP/reference | 0.77489 | 0.061 |
42DAP/reference | 0.97045 | 0.482 |
43DAP/reference | 0.82652 | 0.043 |
47DAP/reference | 0.86922 | 0.075 |
52DAP/reference | 0.89419 | 0.101 |
57DAP/reference | 0.86142 | 0.194 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.3945 | 0.172 |
17DAP/reference | 1.36 | 0.136 |
27DAP/reference | 1.21273 | 0.072 |
39DAP/reference | 1.12872 | 0.157 |
41DAP/reference | 1.06663 | 0.692 |
42DAP/reference | 1.01975 | 1 |
43DAP/reference | 0.85868 | 0.12 |
47DAP/reference | 1.01705 | 0.966 |
52DAP/reference | 0.90438 | 0.319 |
57DAP/reference | 1.19359 | 0.279 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.16695 | 0.966 |
26DAP/20DAP | 1.13654 | 0.689 |
34DAP/26DAP | 1.04809 | 1 |
51DAP/34DAP | 1.19885 | 0.159 |
52DAP/51DAP | 1.08219 | 0.616 |
53DAP/52DAP | 0.61027 | 0.049 |
55DAP/53DAP | 0.45193 | 0.017 |
57DAP/55DAP | 0.92727 | 0.638 |
62DAP/57DAP | 1.71723 | 0.015 |
68DAP/62DAP | 0.87095 | 0.609 |
68DAP/14DAP | 0.67942 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.24547 | 0.019 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.02083 | 0.666 |
Mature Green Tomato/Ripe Tomato | 5.38233 | 0.015 |
Immature Eggplant/Mature Eggplant | 0.39391 | 0.063 |
Ripe Pepper/Ripe Tomato | 10.9621 | 0.258 |
Mature Eggplant/Ripe Tomato | 6.86802 | 0.268 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.44796 | |
1-1-2/M82 | 0.90322 | 0.958 |
12-2/M82 | 0.81199 | |
12-4/M82 | 0.93337 | 1 |
1-3/M82 | 1.15819 | 0.277 |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.96582 | |
3-2/M82 | 0.88936 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 1.00115 | 1 |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 1.3836 | |
5-3/M82 | 1.10289 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | 0.99061 | |
7-1/M82 | 0.86305 | 1 |
7-2/M82 | 1.30074 | |
9-3-2/M82 | 1.42438 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.86577 | 0.243 |
IL2-6/WTpooled | 0.95949 | 0.348 |
IL7-5/WTpooled | 0.98745 | 1 |
IL7-3/WTpooled | 1.00956 | 1 |
IL12-4/WTpooled | 1.16936 | 0.673 |
IL1-4/WTpooled | 0.90601 | 0.834 |
WT/WTpooled | 1.0515 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.06233 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.8876 | 0.941 |
DC3000/delta hrp 6h | 0.95104 | 0.95 |
DC3000/delta hrp 12h | 1.22528 | 1 |
DC3000/delta hrp 24h | 0.54496 | 0.034 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.58614 | 0.025 |
DC3000 delta B/DC3000 delta AB | 0.60409 | 0.02 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.85226 | 1 |
Exp 36h | 0.80618 | 0.504 |
Exp 60h | 0.65804 | 0.343 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.96725 | 1 |
Var 0h | 1.05758 | 0.421 |
Var 12h I row2-row1 | 0.68922 | 0.338 |
Var 12h NI row2-row1 | 0.96001 | 0.546 |
Var 36h I row2-row1 | 0.92837 | 1 |
Var 36h NI row2-row1 | 1.26244 | 0.482 |
Var 60h I row2-row1 | 1.23294 | 1 |
Var 60h NI row2-row1 | 1.17633 | 0.904 |
Time course 0hI-0hNI | 0.94569 | 0.54 |
Time course 12hI-12hNI | 1.07297 | 0.572 |
Time course 36hI-36hNI | 0.95459 | 0.306 |
Time course 60hI-60hNI | 0.14797 | 0.005 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.12066 | 0.347 |
transgenic ySAMdc/azygous control (breaker) | 1.24384 | 0.172 |
transgenic ySAMdc/azygous control (red) | 1.73766 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.93996 | 0.052 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.40041 | 0.239 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 5.21787 | 0.083 |
Manapal/WT (break) | 5.72871 | 0.123 |
Manapal/WT (red) | 5.90021 | 0.137 |
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