Expression of 1-1-6.2.1.2
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.49874 | 0.026 |
27DAP/17DAP | 0.85457 | 0.637 |
39DAP/27DAP | 1.44057 | 0.14 |
41DAP/39DAP | 0.97874 | 0.887 |
42DAP/41DAP | 1.04073 | 1 |
43DAP/42DAP | 1.10508 | 1 |
47DAP/43DAP | 0.83376 | 0.492 |
52DAP/47DAP | 1.41203 | 0.559 |
57DAP/52DAP | 1.04955 | 0.912 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.40761 | 0.015 |
17DAP/reference | 0.69157 | 0.008 |
27DAP/reference | 0.81907 | 0.089 |
39DAP/reference | 0.7225 | 0.017 |
41DAP/reference | 0.75219 | 0.018 |
42DAP/reference | 0.89151 | 0.075 |
43DAP/reference | 0.94379 | 0.48 |
47DAP/reference | 0.93126 | 0.137 |
52DAP/reference | 0.96059 | 0.416 |
57DAP/reference | 1.08446 | 0.548 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.70739 | 0.054 |
27DAP/17DAP | 1.00454 | 0.969 |
39DAP/27DAP | 1.07832 | 0.575 |
41DAP/39DAP | 1.16333 | 0.427 |
42DAP/41DAP | 0.6732 | 0.01 |
43DAP/42DAP | 1.05826 | 0.788 |
47DAP/43DAP | 0.84474 | 0.332 |
52DAP/47DAP | 1.08461 | 0.742 |
57DAP/52DAP | 1.55361 | 0.035 |
57DAP/7DAP | 0.72547 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.98853 | 0.613 |
17DAP/reference | 0.8245 | 0.072 |
27DAP/reference | 0.88298 | 0.146 |
39DAP/reference | 0.82214 | 0.073 |
41DAP/reference | 0.71801 | 0.04 |
42DAP/reference | 0.77187 | 0.086 |
43DAP/reference | 0.96155 | 0.44 |
47DAP/reference | 0.79354 | 0.044 |
52DAP/reference | 0.71032 | 0.017 |
57DAP/reference | 0.67815 | 0.014 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.72201 | 0.082 |
17DAP/reference | 0.82024 | 0.005 |
27DAP/reference | 0.89295 | 0.167 |
39DAP/reference | 0.91381 | 0.298 |
41DAP/reference | 0.77189 | 0.043 |
42DAP/reference | 0.81212 | 0.028 |
43DAP/reference | 0.69461 | 0.004 |
47DAP/reference | 0.88178 | 0.04 |
52DAP/reference | 0.72326 | 0.007 |
57DAP/reference | 0.81207 | 0.037 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.65308 | 0.059 |
17DAP/reference | 0.80721 | 0.172 |
27DAP/reference | 0.79959 | 0.097 |
39DAP/reference | 0.66867 | 0.011 |
41DAP/reference | 0.76719 | 0.021 |
42DAP/reference | 0.75684 | 0.025 |
43DAP/reference | 0.72911 | 0.023 |
47DAP/reference | 0.68402 | 0.005 |
52DAP/reference | 0.69865 | 0.082 |
57DAP/reference | 0.79802 | 0.064 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.12633 | 1 |
26DAP/20DAP | 0.90985 | 1 |
34DAP/26DAP | N/A | N/A |
51DAP/34DAP | 1.19462 | 0.677 |
52DAP/51DAP | 0.98127 | |
53DAP/52DAP | 1.20209 | 0.895 |
55DAP/53DAP | 0.86828 | 0.35 |
57DAP/55DAP | 1.29177 | 0.865 |
62DAP/57DAP | N/A | N/A |
68DAP/62DAP | 0.68319 | 0.406 |
68DAP/14DAP | 1.9248 | 0.108 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 3.7824 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.8381 | 0.058 |
Mature Green Tomato/Ripe Tomato | 2.08954 | 0.077 |
Immature Eggplant/Mature Eggplant | 1.38747 | 0.052 |
Ripe Pepper/Ripe Tomato | 1.26724 | 1 |
Mature Eggplant/Ripe Tomato | 5.99513 | 0.268 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 0.6324 | |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.91826 | 0.298 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | 0.62409 | |
2-6/M82 | N/A | N/A |
3-2/M82 | 1.1021 | |
4-1-1/M82 | 0.83044 | |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 1.33071 | 1 |
5-3/M82 | 1.50567 | 0.572 |
6-2/M82 | N/A | N/A |
6-3/M82 | 1.34655 | 1 |
7-1/M82 | 0.91123 | |
7-2/M82 | 1.41887 | |
9-3-2/M82 | 1.47558 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | 0.55444 | 0.581 |
IL1-4/WTpooled | 1.42774 | 0.426 |
WT/WTpooled | 0.69168 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.93046 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.86 | |
DC3000/delta hrp 6h | 1.24977 | 0.428 |
DC3000/delta hrp 12h | 2.14153 | 1 |
DC3000/delta hrp 24h | 0.66339 | 0.034 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.11541 | 0.145 |
DC3000 delta B/DC3000 delta AB | 1.17017 | 0.345 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.1103 | 1 |
Exp 36h | 1.143 | 1 |
Exp 60h | 1.12599 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.97601 | 1 |
Var 0h | 0.43599 | 0.291 |
Var 12h I row2-row1 | 0.90685 | 0.514 |
Var 12h NI row2-row1 | 1.17701 | 0.649 |
Var 36h I row2-row1 | 1.30292 | 0.489 |
Var 36h NI row2-row1 | 1.24982 | 0.482 |
Var 60h I row2-row1 | 1.16445 | 1 |
Var 60h NI row2-row1 | 1.07235 | 1 |
Time course 0hI-0hNI | 1.06002 | 0.852 |
Time course 12hI-12hNI | 0.90624 | 0.484 |
Time course 36hI-36hNI | 0.79096 | 0.089 |
Time course 60hI-60hNI | 0.48367 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.21001 | 0.267 |
transgenic ySAMdc/azygous control (breaker) | 0.72404 | 0.15 |
transgenic ySAMdc/azygous control (red) | 1.01158 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.32483 | 0.041 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.39511 | 0.277 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.39808 | 1 |
Manapal/WT (break) | 0.77294 | 0.333 |
Manapal/WT (red) | 0.70569 | 0.315 |
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