Expression of 1-1-6.2.1.2

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.498740.026
27DAP/17DAP0.854570.637
39DAP/27DAP1.440570.14
41DAP/39DAP0.978740.887
42DAP/41DAP1.040731
43DAP/42DAP1.105081
47DAP/43DAP0.833760.492
52DAP/47DAP1.412030.559
57DAP/52DAP1.049550.912

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.407610.015
17DAP/reference0.691570.008
27DAP/reference0.819070.089
39DAP/reference0.72250.017
41DAP/reference0.752190.018
42DAP/reference0.891510.075
43DAP/reference0.943790.48
47DAP/reference0.931260.137
52DAP/reference0.960590.416
57DAP/reference1.084460.548

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.707390.054
27DAP/17DAP1.004540.969
39DAP/27DAP1.078320.575
41DAP/39DAP1.163330.427
42DAP/41DAP0.67320.01
43DAP/42DAP1.058260.788
47DAP/43DAP0.844740.332
52DAP/47DAP1.084610.742
57DAP/52DAP1.553610.035
57DAP/7DAP0.72547

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.988530.613
17DAP/reference0.82450.072
27DAP/reference0.882980.146
39DAP/reference0.822140.073
41DAP/reference0.718010.04
42DAP/reference0.771870.086
43DAP/reference0.961550.44
47DAP/reference0.793540.044
52DAP/reference0.710320.017
57DAP/reference0.678150.014

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.722010.082
17DAP/reference0.820240.005
27DAP/reference0.892950.167
39DAP/reference0.913810.298
41DAP/reference0.771890.043
42DAP/reference0.812120.028
43DAP/reference0.694610.004
47DAP/reference0.881780.04
52DAP/reference0.723260.007
57DAP/reference0.812070.037

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.653080.059
17DAP/reference0.807210.172
27DAP/reference0.799590.097
39DAP/reference0.668670.011
41DAP/reference0.767190.021
42DAP/reference0.756840.025
43DAP/reference0.729110.023
47DAP/reference0.684020.005
52DAP/reference0.698650.082
57DAP/reference0.798020.064

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.126331
26DAP/20DAP0.909851
34DAP/26DAPN/AN/A
51DAP/34DAP1.194620.677
52DAP/51DAP0.98127
53DAP/52DAP1.202090.895
55DAP/53DAP0.868280.35
57DAP/55DAP1.291770.865
62DAP/57DAPN/AN/A
68DAP/62DAP0.683190.406
68DAP/14DAP1.92480.108

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker3.78240.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.83810.058
Mature Green Tomato/Ripe Tomato2.089540.077
Immature Eggplant/Mature Eggplant1.387470.052
Ripe Pepper/Ripe Tomato1.267241
Mature Eggplant/Ripe Tomato5.995130.268

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M820.6324
12-2/M82N/AN/A
12-4/M820.918260.298
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M820.62409
2-6/M82N/AN/A
3-2/M821.1021
4-1-1/M820.83044
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M821.330711
5-3/M821.505670.572
6-2/M82N/AN/A
6-3/M821.346551
7-1/M820.91123
7-2/M821.41887
9-3-2/M821.47558

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooled0.554440.581
IL1-4/WTpooled1.427740.426
WT/WTpooled0.691681

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.930460.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.86
DC3000/delta hrp 6h1.249770.428
DC3000/delta hrp 12h2.141531
DC3000/delta hrp 24h0.663390.034

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.115410.145
DC3000 delta B/DC3000 delta AB1.170170.345

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.11031
Exp 36h1.1431
Exp 60h1.125990.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.976011
Var 0h0.435990.291
Var 12h I row2-row10.906850.514
Var 12h NI row2-row11.177010.649
Var 36h I row2-row11.302920.489
Var 36h NI row2-row11.249820.482
Var 60h I row2-row11.164451
Var 60h NI row2-row11.072351
Time course 0hI-0hNI1.060020.852
Time course 12hI-12hNI0.906240.484
Time course 36hI-36hNI0.790960.089
Time course 60hI-60hNI0.483670.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.210010.267
transgenic ySAMdc/azygous control (breaker)0.724040.15
transgenic ySAMdc/azygous control (red)1.011581

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.324830.041

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.395110.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.398081
Manapal/WT (break)0.772940.333
Manapal/WT (red)0.705690.315