Expression of 1-1-6.2.1.7

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.88830.475
27DAP/17DAP0.748470.185
39DAP/27DAP1.811670.106
41DAP/39DAP0.721310.126
42DAP/41DAP1.096320.978
43DAP/42DAP0.857990.627
47DAP/43DAP0.691510.2
52DAP/47DAP1.457310.288
57DAP/52DAP1.438330.561

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.671310.011
17DAP/reference1.080610.399
27DAP/reference0.930740.359
39DAP/reference0.913830.342
41DAP/reference0.895480.267
42DAP/reference1.439940.001
43DAP/reference1.328180.013
47DAP/reference1.204880.004
52DAP/reference1.128090.388
57DAP/reference1.38140.011

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.982570.75
27DAP/17DAP1.088660.747
39DAP/27DAP0.951140.673
41DAP/39DAP1.12180.883
42DAP/41DAP1.117680.508
43DAP/42DAP0.913220.269
47DAP/43DAP1.074960.765
52DAP/47DAP0.883370.389
57DAP/52DAP1.33190.121
57DAP/7DAP0.788481

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.471720.039
17DAP/reference1.071960.822
27DAP/reference1.23270.073
39DAP/reference1.197690.013
41DAP/reference1.186550.101
42DAP/reference1.080130.308
43DAP/reference1.094610.167
47DAP/reference1.338530.093
52DAP/reference2.589540.007
57DAP/reference1.73080.024

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.234510.102
17DAP/reference1.464320.009
27DAP/reference1.827140.014
39DAP/reference1.539980.012
41DAP/reference1.317060.02
42DAP/reference1.538580.022
43DAP/reference1.277920.489
47DAP/reference1.493580.015
52DAP/reference0.949460.259
57DAP/reference1.076540.887

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.203650.109
17DAP/reference1.020861
27DAP/reference1.011641
39DAP/reference1.354440.053
41DAP/reference1.187790.024
42DAP/reference1.201410.22
43DAP/reference1.438530.073
47DAP/reference1.00780.754
52DAP/reference1.476440.059
57DAP/reference1.494180.011

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.986251
26DAP/20DAP1.86380.103
34DAP/26DAP0.764940.234
51DAP/34DAP0.788560.06
52DAP/51DAP0.822531
53DAP/52DAP0.72510.311
55DAP/53DAP0.768930.263
57DAP/55DAP1.677020.079
62DAP/57DAP1.73310.515
68DAP/62DAP0.985070.863
68DAP/14DAP1.36730.384

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.127660.74

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.768040.226
Mature Green Tomato/Ripe Tomato1.475380.106
Immature Eggplant/Mature Eggplant1.529170.05
Ripe Pepper/Ripe Tomato1.058421
Mature Eggplant/Ripe Tomato1.220620.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.906080.944
1-1-2/M821.134541
12-2/M820.840920.862
12-4/M820.979131
1-3/M822.24310.248
2-1-1/M820.850030.465
2-1/M820.815040.74
2-6/M820.958511
3-2/M821.03949
4-1-1/M820.942221
4-1/M821.722531
4-3-2/M821.482350.241
4-3/M821.231581
5-3/M821.266180.496
6-2/M820.977891
6-3/M821.119861
7-1/M820.824180.803
7-2/M821.265750.385
9-3-2/M821.136051

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.937630.321
IL2-6/WTpooled1.060961
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.930051
IL12-4/WTpooled1.228570.557
IL1-4/WTpooled1.116771
WT/WTpooled1.180680.818

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.040131

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.102520.921
DC3000/delta hrp 6h0.871440.95
DC3000/delta hrp 12h1.010841
DC3000/delta hrp 24h1.020231

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.089650.208
DC3000 delta B/DC3000 delta AB1.082940.429

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.018141
Var 0h1.316370.782
Var 12h I row2-row10.99561
Var 12h NI row2-row11.352820.649
Var 36h I row2-row11.125191
Var 36h NI row2-row11.072991
Var 60h I row2-row10.80420.439
Var 60h NI row2-row10.847880.38
Time course 0hI-0hNI0.877210.185
Time course 12hI-12hNI0.995911
Time course 36hI-36hNI1.357820.019
Time course 60hI-60hNI1.354370.037

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.04850.482
transgenic ySAMdc/azygous control (breaker)1.296711
transgenic ySAMdc/azygous control (red)1.266080.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.144850.194

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.982830.789

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.276620.307
Manapal/WT (break)1.383760.183
Manapal/WT (red)1.058171