Expression of 1-1-6.2.1.7
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.8883 | 0.475 |
27DAP/17DAP | 0.74847 | 0.185 |
39DAP/27DAP | 1.81167 | 0.106 |
41DAP/39DAP | 0.72131 | 0.126 |
42DAP/41DAP | 1.09632 | 0.978 |
43DAP/42DAP | 0.85799 | 0.627 |
47DAP/43DAP | 0.69151 | 0.2 |
52DAP/47DAP | 1.45731 | 0.288 |
57DAP/52DAP | 1.43833 | 0.561 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.67131 | 0.011 |
17DAP/reference | 1.08061 | 0.399 |
27DAP/reference | 0.93074 | 0.359 |
39DAP/reference | 0.91383 | 0.342 |
41DAP/reference | 0.89548 | 0.267 |
42DAP/reference | 1.43994 | 0.001 |
43DAP/reference | 1.32818 | 0.013 |
47DAP/reference | 1.20488 | 0.004 |
52DAP/reference | 1.12809 | 0.388 |
57DAP/reference | 1.3814 | 0.011 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.98257 | 0.75 |
27DAP/17DAP | 1.08866 | 0.747 |
39DAP/27DAP | 0.95114 | 0.673 |
41DAP/39DAP | 1.1218 | 0.883 |
42DAP/41DAP | 1.11768 | 0.508 |
43DAP/42DAP | 0.91322 | 0.269 |
47DAP/43DAP | 1.07496 | 0.765 |
52DAP/47DAP | 0.88337 | 0.389 |
57DAP/52DAP | 1.3319 | 0.121 |
57DAP/7DAP | 0.78848 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.47172 | 0.039 |
17DAP/reference | 1.07196 | 0.822 |
27DAP/reference | 1.2327 | 0.073 |
39DAP/reference | 1.19769 | 0.013 |
41DAP/reference | 1.18655 | 0.101 |
42DAP/reference | 1.08013 | 0.308 |
43DAP/reference | 1.09461 | 0.167 |
47DAP/reference | 1.33853 | 0.093 |
52DAP/reference | 2.58954 | 0.007 |
57DAP/reference | 1.7308 | 0.024 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.23451 | 0.102 |
17DAP/reference | 1.46432 | 0.009 |
27DAP/reference | 1.82714 | 0.014 |
39DAP/reference | 1.53998 | 0.012 |
41DAP/reference | 1.31706 | 0.02 |
42DAP/reference | 1.53858 | 0.022 |
43DAP/reference | 1.27792 | 0.489 |
47DAP/reference | 1.49358 | 0.015 |
52DAP/reference | 0.94946 | 0.259 |
57DAP/reference | 1.07654 | 0.887 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.20365 | 0.109 |
17DAP/reference | 1.02086 | 1 |
27DAP/reference | 1.01164 | 1 |
39DAP/reference | 1.35444 | 0.053 |
41DAP/reference | 1.18779 | 0.024 |
42DAP/reference | 1.20141 | 0.22 |
43DAP/reference | 1.43853 | 0.073 |
47DAP/reference | 1.0078 | 0.754 |
52DAP/reference | 1.47644 | 0.059 |
57DAP/reference | 1.49418 | 0.011 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.98625 | 1 |
26DAP/20DAP | 1.8638 | 0.103 |
34DAP/26DAP | 0.76494 | 0.234 |
51DAP/34DAP | 0.78856 | 0.06 |
52DAP/51DAP | 0.82253 | 1 |
53DAP/52DAP | 0.7251 | 0.311 |
55DAP/53DAP | 0.76893 | 0.263 |
57DAP/55DAP | 1.67702 | 0.079 |
62DAP/57DAP | 1.7331 | 0.515 |
68DAP/62DAP | 0.98507 | 0.863 |
68DAP/14DAP | 1.3673 | 0.384 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.12766 | 0.74 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.76804 | 0.226 |
Mature Green Tomato/Ripe Tomato | 1.47538 | 0.106 |
Immature Eggplant/Mature Eggplant | 1.52917 | 0.05 |
Ripe Pepper/Ripe Tomato | 1.05842 | 1 |
Mature Eggplant/Ripe Tomato | 1.22062 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.90608 | 0.944 |
1-1-2/M82 | 1.13454 | 1 |
12-2/M82 | 0.84092 | 0.862 |
12-4/M82 | 0.97913 | 1 |
1-3/M82 | 2.2431 | 0.248 |
2-1-1/M82 | 0.85003 | 0.465 |
2-1/M82 | 0.81504 | 0.74 |
2-6/M82 | 0.95851 | 1 |
3-2/M82 | 1.03949 | |
4-1-1/M82 | 0.94222 | 1 |
4-1/M82 | 1.72253 | 1 |
4-3-2/M82 | 1.48235 | 0.241 |
4-3/M82 | 1.23158 | 1 |
5-3/M82 | 1.26618 | 0.496 |
6-2/M82 | 0.97789 | 1 |
6-3/M82 | 1.11986 | 1 |
7-1/M82 | 0.82418 | 0.803 |
7-2/M82 | 1.26575 | 0.385 |
9-3-2/M82 | 1.13605 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.93763 | 0.321 |
IL2-6/WTpooled | 1.06096 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.93005 | 1 |
IL12-4/WTpooled | 1.22857 | 0.557 |
IL1-4/WTpooled | 1.11677 | 1 |
WT/WTpooled | 1.18068 | 0.818 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.04013 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.10252 | 0.921 |
DC3000/delta hrp 6h | 0.87144 | 0.95 |
DC3000/delta hrp 12h | 1.01084 | 1 |
DC3000/delta hrp 24h | 1.02023 | 1 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.08965 | 0.208 |
DC3000 delta B/DC3000 delta AB | 1.08294 | 0.429 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.01814 | 1 |
Var 0h | 1.31637 | 0.782 |
Var 12h I row2-row1 | 0.9956 | 1 |
Var 12h NI row2-row1 | 1.35282 | 0.649 |
Var 36h I row2-row1 | 1.12519 | 1 |
Var 36h NI row2-row1 | 1.07299 | 1 |
Var 60h I row2-row1 | 0.8042 | 0.439 |
Var 60h NI row2-row1 | 0.84788 | 0.38 |
Time course 0hI-0hNI | 0.87721 | 0.185 |
Time course 12hI-12hNI | 0.99591 | 1 |
Time course 36hI-36hNI | 1.35782 | 0.019 |
Time course 60hI-60hNI | 1.35437 | 0.037 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.0485 | 0.482 |
transgenic ySAMdc/azygous control (breaker) | 1.29671 | 1 |
transgenic ySAMdc/azygous control (red) | 1.26608 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.14485 | 0.194 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.98283 | 0.789 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.27662 | 0.307 |
Manapal/WT (break) | 1.38376 | 0.183 |
Manapal/WT (red) | 1.05817 | 1 |
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