Expression of 1-1-6.2.14.17
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.86255 | 0.054 |
27DAP/17DAP | 1.0087 | 1 |
39DAP/27DAP | 1.23749 | 0.323 |
41DAP/39DAP | 0.78215 | 0.26 |
42DAP/41DAP | 1.09934 | 0.962 |
43DAP/42DAP | 1.05984 | 1 |
47DAP/43DAP | 0.90239 | 0.628 |
52DAP/47DAP | 0.98594 | 0.821 |
57DAP/52DAP | 1.20118 | 0.944 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.90504 | 0.106 |
17DAP/reference | 0.8028 | 0.104 |
27DAP/reference | 0.8015 | 0.075 |
39DAP/reference | 0.86914 | 0.306 |
41DAP/reference | 0.91966 | 0.341 |
42DAP/reference | 1.00883 | 0.731 |
43DAP/reference | 0.99365 | 0.84 |
47DAP/reference | 1.01079 | 1 |
52DAP/reference | 0.82246 | 0.135 |
57DAP/reference | 0.97038 | 0.395 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.82849 | 0.062 |
27DAP/17DAP | 1.12681 | 0.447 |
39DAP/27DAP | 0.96651 | 0.668 |
41DAP/39DAP | 1.20369 | 0.407 |
42DAP/41DAP | 0.81647 | 0.017 |
43DAP/42DAP | 0.87686 | 0.127 |
47DAP/43DAP | 1.01081 | 0.957 |
52DAP/47DAP | 0.87562 | 0.498 |
57DAP/52DAP | 0.7814 | 0.27 |
57DAP/7DAP | 1.0649 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.18737 | 0.119 |
17DAP/reference | 1.23283 | 0.026 |
27DAP/reference | 1.25147 | 0.017 |
39DAP/reference | 1.24985 | 0.009 |
41DAP/reference | 1.16132 | 0.023 |
42DAP/reference | 1.37477 | 0.024 |
43DAP/reference | 1.13113 | 0.344 |
47DAP/reference | 1.20698 | 0.324 |
52DAP/reference | 1.12602 | 0.043 |
57DAP/reference | 0.94659 | 0.26 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.74596 | 0.012 |
17DAP/reference | 1.0352 | 0.874 |
27DAP/reference | 1.1122 | 0.2 |
39DAP/reference | 0.96252 | 0.416 |
41DAP/reference | 0.8797 | 0.071 |
42DAP/reference | 0.8904 | 0.061 |
43DAP/reference | 0.92841 | 0.385 |
47DAP/reference | 1.01582 | 0.678 |
52DAP/reference | 0.9129 | 0.051 |
57DAP/reference | 0.82049 | 0.006 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.83339 | 0.119 |
17DAP/reference | 0.86549 | 0.194 |
27DAP/reference | 0.98589 | 0.657 |
39DAP/reference | 0.97542 | 0.544 |
41DAP/reference | 0.97478 | 0.56 |
42DAP/reference | 1.05249 | 0.818 |
43DAP/reference | 1.10081 | 0.572 |
47DAP/reference | 0.91001 | 0.269 |
52DAP/reference | 0.98386 | 0.747 |
57DAP/reference | 1.0069 | 0.765 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.27152 | 0.966 |
26DAP/20DAP | 0.84657 | 0.512 |
34DAP/26DAP | 1.04001 | 1 |
51DAP/34DAP | 0.75497 | 0.094 |
52DAP/51DAP | 0.90565 | 1 |
53DAP/52DAP | 1.07449 | 0.845 |
55DAP/53DAP | 1.01402 | 0.948 |
57DAP/55DAP | 0.93838 | 0.694 |
62DAP/57DAP | 1.25718 | 0.935 |
68DAP/62DAP | 0.73214 | 0.314 |
68DAP/14DAP | 0.89613 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 4.91046 | 0.061 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.21443 | 0.068 |
Mature Green Tomato/Ripe Tomato | 1.9922 | 0.018 |
Immature Eggplant/Mature Eggplant | 1.0956 | 0.198 |
Ripe Pepper/Ripe Tomato | 0.86098 | 1 |
Mature Eggplant/Ripe Tomato | 0.80783 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.79425 | 0.512 |
1-1-2/M82 | 1.12753 | 1 |
12-2/M82 | 0.96424 | 0.955 |
12-4/M82 | 0.95026 | 1 |
1-3/M82 | 1.67711 | 0.26 |
2-1-1/M82 | 1.053 | 0.457 |
2-1/M82 | 0.70324 | |
2-6/M82 | 0.87265 | 1 |
3-2/M82 | 1.58695 | |
4-1-1/M82 | 1.08379 | 1 |
4-1/M82 | 1.41923 | 1 |
4-3-2/M82 | 1.83757 | 0.284 |
4-3/M82 | 1.45462 | 1 |
5-3/M82 | 0.8737 | 0.642 |
6-2/M82 | 0.99587 | 1 |
6-3/M82 | 1.16368 | 1 |
7-1/M82 | 1.05081 | |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 1.48528 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.01434 | 1 |
IL2-6/WTpooled | 0.8721 | 1 |
IL7-5/WTpooled | 1.19029 | 0.792 |
IL7-3/WTpooled | 0.97257 | 1 |
IL12-4/WTpooled | 0.94965 | 1 |
IL1-4/WTpooled | 1.1342 | 1 |
WT/WTpooled | 0.96009 | 0.67 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.21712 | 0.309 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.25645 | |
DC3000/delta hrp 6h | 0.88634 | 0.95 |
DC3000/delta hrp 12h | 0.87695 | 1 |
DC3000/delta hrp 24h | 1.0419 | 0.655 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.29901 | 0.27 |
DC3000 delta B/DC3000 delta AB | 1.56315 | 0.079 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.26052 | 1 |
Exp 36h | 1.07272 | 1 |
Exp 60h | 1.12135 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.0685 | 1 |
Var 0h | 1.23602 | 0.98 |
Var 12h I row2-row1 | 1.00394 | 1 |
Var 12h NI row2-row1 | 1.11404 | 0.649 |
Var 36h I row2-row1 | 1.20247 | 0.489 |
Var 36h NI row2-row1 | 0.91975 | 0.743 |
Var 60h I row2-row1 | 0.7983 | 0.582 |
Var 60h NI row2-row1 | 0.85314 | 0.516 |
Time course 0hI-0hNI | 1.14073 | 0.377 |
Time course 12hI-12hNI | 1.18929 | 0.011 |
Time course 36hI-36hNI | 1.85861 | 0.005 |
Time course 60hI-60hNI | 4.36309 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.9665 | 0.529 |
transgenic ySAMdc/azygous control (breaker) | 0.73471 | 0.137 |
transgenic ySAMdc/azygous control (red) | 0.79759 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.17913 | 0.086 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.71144 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.61492 | 1 |
Manapal/WT (break) | 0.69525 | 0.333 |
Manapal/WT (red) | 0.92748 | 0.424 |
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