Expression of 1-1-6.2.14.17

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.862550.054
27DAP/17DAP1.00871
39DAP/27DAP1.237490.323
41DAP/39DAP0.782150.26
42DAP/41DAP1.099340.962
43DAP/42DAP1.059841
47DAP/43DAP0.902390.628
52DAP/47DAP0.985940.821
57DAP/52DAP1.201180.944

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.905040.106
17DAP/reference0.80280.104
27DAP/reference0.80150.075
39DAP/reference0.869140.306
41DAP/reference0.919660.341
42DAP/reference1.008830.731
43DAP/reference0.993650.84
47DAP/reference1.010791
52DAP/reference0.822460.135
57DAP/reference0.970380.395

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.828490.062
27DAP/17DAP1.126810.447
39DAP/27DAP0.966510.668
41DAP/39DAP1.203690.407
42DAP/41DAP0.816470.017
43DAP/42DAP0.876860.127
47DAP/43DAP1.010810.957
52DAP/47DAP0.875620.498
57DAP/52DAP0.78140.27
57DAP/7DAP1.06491

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.187370.119
17DAP/reference1.232830.026
27DAP/reference1.251470.017
39DAP/reference1.249850.009
41DAP/reference1.161320.023
42DAP/reference1.374770.024
43DAP/reference1.131130.344
47DAP/reference1.206980.324
52DAP/reference1.126020.043
57DAP/reference0.946590.26

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.745960.012
17DAP/reference1.03520.874
27DAP/reference1.11220.2
39DAP/reference0.962520.416
41DAP/reference0.87970.071
42DAP/reference0.89040.061
43DAP/reference0.928410.385
47DAP/reference1.015820.678
52DAP/reference0.91290.051
57DAP/reference0.820490.006

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.833390.119
17DAP/reference0.865490.194
27DAP/reference0.985890.657
39DAP/reference0.975420.544
41DAP/reference0.974780.56
42DAP/reference1.052490.818
43DAP/reference1.100810.572
47DAP/reference0.910010.269
52DAP/reference0.983860.747
57DAP/reference1.00690.765

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.271520.966
26DAP/20DAP0.846570.512
34DAP/26DAP1.040011
51DAP/34DAP0.754970.094
52DAP/51DAP0.905651
53DAP/52DAP1.074490.845
55DAP/53DAP1.014020.948
57DAP/55DAP0.938380.694
62DAP/57DAP1.257180.935
68DAP/62DAP0.732140.314
68DAP/14DAP0.896130.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker4.910460.061

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.214430.068
Mature Green Tomato/Ripe Tomato1.99220.018
Immature Eggplant/Mature Eggplant1.09560.198
Ripe Pepper/Ripe Tomato0.860981
Mature Eggplant/Ripe Tomato0.807831

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.794250.512
1-1-2/M821.127531
12-2/M820.964240.955
12-4/M820.950261
1-3/M821.677110.26
2-1-1/M821.0530.457
2-1/M820.70324
2-6/M820.872651
3-2/M821.58695
4-1-1/M821.083791
4-1/M821.419231
4-3-2/M821.837570.284
4-3/M821.454621
5-3/M820.87370.642
6-2/M820.995871
6-3/M821.163681
7-1/M821.05081
7-2/M82N/AN/A
9-3-2/M821.485281

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.014341
IL2-6/WTpooled0.87211
IL7-5/WTpooled1.190290.792
IL7-3/WTpooled0.972571
IL12-4/WTpooled0.949651
IL1-4/WTpooled1.13421
WT/WTpooled0.960090.67

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.217120.309

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.25645
DC3000/delta hrp 6h0.886340.95
DC3000/delta hrp 12h0.876951
DC3000/delta hrp 24h1.04190.655

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.299010.27
DC3000 delta B/DC3000 delta AB1.563150.079

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.260521
Exp 36h1.072721
Exp 60h1.121351

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.06851
Var 0h1.236020.98
Var 12h I row2-row11.003941
Var 12h NI row2-row11.114040.649
Var 36h I row2-row11.202470.489
Var 36h NI row2-row10.919750.743
Var 60h I row2-row10.79830.582
Var 60h NI row2-row10.853140.516
Time course 0hI-0hNI1.140730.377
Time course 12hI-12hNI1.189290.011
Time course 36hI-36hNI1.858610.005
Time course 60hI-60hNI4.363090.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.96650.529
transgenic ySAMdc/azygous control (breaker)0.734710.137
transgenic ySAMdc/azygous control (red)0.797591

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.179130.086

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.711440.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.614921
Manapal/WT (break)0.695250.333
Manapal/WT (red)0.927480.424