Expression of 1-1-6.2.15.12
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.04274 | 0.961 |
27DAP/17DAP | 1.03832 | 0.895 |
39DAP/27DAP | 0.7986 | 0.462 |
41DAP/39DAP | 1.47022 | 0.172 |
42DAP/41DAP | 0.932 | 1 |
43DAP/42DAP | 0.92716 | 0.801 |
47DAP/43DAP | 1.28674 | 0.258 |
52DAP/47DAP | 0.94922 | 0.812 |
57DAP/52DAP | 0.88587 | 0.759 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.88864 | 0.089 |
17DAP/reference | 0.89017 | 0.208 |
27DAP/reference | 1.01776 | 0.806 |
39DAP/reference | 0.98524 | 0.762 |
41DAP/reference | 0.8328 | 0.026 |
42DAP/reference | 0.93041 | 0.059 |
43DAP/reference | 0.90485 | 0.093 |
47DAP/reference | 0.97503 | 0.392 |
52DAP/reference | 0.98728 | 0.598 |
57DAP/reference | 1.13911 | 0.063 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.9131 | 0.311 |
27DAP/17DAP | 0.96611 | 0.724 |
39DAP/27DAP | 1.06081 | 0.581 |
41DAP/39DAP | 1.14596 | 0.868 |
42DAP/41DAP | 0.96671 | 0.721 |
43DAP/42DAP | 1.03254 | 0.664 |
47DAP/43DAP | 0.96249 | 0.805 |
52DAP/47DAP | 0.97531 | 0.893 |
57DAP/52DAP | 1.01884 | 0.992 |
57DAP/7DAP | 1.0233 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97833 | 0.55 |
17DAP/reference | 0.98439 | 0.518 |
27DAP/reference | 0.99569 | 0.698 |
39DAP/reference | 1.03887 | 0.779 |
41DAP/reference | 1.04684 | 0.507 |
42DAP/reference | 1.03735 | 0.889 |
43DAP/reference | 1.04378 | 0.672 |
47DAP/reference | 1.00985 | 0.932 |
52DAP/reference | 0.93747 | 0.196 |
57DAP/reference | 1.08733 | 0.308 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.95434 | 0.399 |
17DAP/reference | 0.8441 | 0.007 |
27DAP/reference | 0.83544 | 0.049 |
39DAP/reference | 0.81425 | 0.06 |
41DAP/reference | 0.98624 | 0.519 |
42DAP/reference | 0.87601 | 0.046 |
43DAP/reference | 0.87927 | 0.135 |
47DAP/reference | 0.89628 | 0.032 |
52DAP/reference | 0.92149 | 0.017 |
57DAP/reference | 0.80822 | 0.011 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.06777 | 0.408 |
17DAP/reference | 1.00342 | 0.87 |
27DAP/reference | 1.14759 | 0.1 |
39DAP/reference | 1.03376 | 0.792 |
41DAP/reference | 0.97783 | 0.56 |
42DAP/reference | 1.07386 | 0.556 |
43DAP/reference | 0.96153 | 0.305 |
47DAP/reference | 1.01064 | 1 |
52DAP/reference | 0.98627 | 0.732 |
57DAP/reference | 1.12649 | 0.378 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.03748 | 0.966 |
26DAP/20DAP | 0.86998 | 0.512 |
34DAP/26DAP | 1.01774 | 1 |
51DAP/34DAP | 0.94833 | 0.606 |
52DAP/51DAP | 0.96755 | 1 |
53DAP/52DAP | 0.93412 | 0.684 |
55DAP/53DAP | 0.97054 | 0.775 |
57DAP/55DAP | 1.00776 | 1 |
62DAP/57DAP | 1.14013 | 0.678 |
68DAP/62DAP | 1.03108 | 0.95 |
68DAP/14DAP | 1.23575 | 0.558 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.73044 | 0.059 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.02568 | 1 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.6726 | |
Mature Eggplant/Ripe Tomato | 1.03912 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.99931 | 1 |
1-1-2/M82 | 0.83971 | |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.94107 | 1 |
1-3/M82 | 0.80407 | 0.378 |
2-1-1/M82 | 1.01409 | 1 |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.27728 | 0.374 |
3-2/M82 | 0.78294 | 1 |
4-1-1/M82 | 0.95703 | 1 |
4-1/M82 | 0.92382 | 1 |
4-3-2/M82 | 0.92126 | |
4-3/M82 | 0.76505 | 0.72 |
5-3/M82 | 0.92523 | 0.642 |
6-2/M82 | N/A | N/A |
6-3/M82 | 1.12392 | 1 |
7-1/M82 | N/A | N/A |
7-2/M82 | 1.02526 | 1 |
9-3-2/M82 | 0.89482 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.90859 | 0.321 |
IL2-6/WTpooled | 1.15178 | 0.392 |
IL7-5/WTpooled | 0.61296 | 1 |
IL7-3/WTpooled | 1.03797 | 1 |
IL12-4/WTpooled | 1.28475 | 0.481 |
IL1-4/WTpooled | 0.86375 | 0.699 |
WT/WTpooled | 1.01758 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.70929 | |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.95066 | 0.941 |
DC3000/delta hrp 6h | 1.46464 | 1 |
DC3000/delta hrp 12h | 1.08347 | 1 |
DC3000/delta hrp 24h | 1.12433 | 0.347 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.77707 | 0.124 |
DC3000 delta B/DC3000 delta AB | 0.95184 | 0.638 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.02678 | 1 |
Exp 36h | 1.19612 | 1 |
Exp 60h | 1.09556 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.98988 | 1 |
Var 0h | 0.97309 | 0.98 |
Var 12h I row2-row1 | 1.07416 | 0.58 |
Var 12h NI row2-row1 | 0.9994 | 1 |
Var 36h I row2-row1 | 0.94968 | 1 |
Var 36h NI row2-row1 | 0.94999 | 0.743 |
Var 60h I row2-row1 | 1.2175 | 0.562 |
Var 60h NI row2-row1 | 1.28531 | 0.904 |
Time course 0hI-0hNI | 1.14029 | 0.662 |
Time course 12hI-12hNI | 1.08182 | 0.611 |
Time course 36hI-36hNI | 0.94777 | 0.269 |
Time course 60hI-60hNI | 1.18652 | 0.096 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.06941 | 0.325 |
transgenic ySAMdc/azygous control (breaker) | 0.9966 | 1 |
transgenic ySAMdc/azygous control (red) | 0.96277 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.99881 | 0.911 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.06303 | 0.239 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.96815 | 1 |
Manapal/WT (break) | 1.01279 | 1 |
Manapal/WT (red) | 0.86609 | 0.607 |
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