Expression of 1-1-6.2.15.18

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.976760.811
27DAP/17DAP1.03751
39DAP/27DAP1.02840.876
41DAP/39DAP1.194620.37
42DAP/41DAP1.044560.983
43DAP/42DAP0.97530.914
47DAP/43DAP0.957130.828
52DAP/47DAP1.093240.844
57DAP/52DAP0.951680.803

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.408480.027
17DAP/reference1.005150.874
27DAP/reference1.125380.264
39DAP/reference1.357630.013
41DAP/reference1.10430.145
42DAP/reference1.348420.015
43DAP/reference1.109670.175
47DAP/reference1.330360.001
52DAP/reference1.70302
57DAP/reference1.120410.355

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.029710.719
27DAP/17DAP0.996110.969
39DAP/27DAP1.005990.854
41DAP/39DAP1.002861
42DAP/41DAP1.027280.852
43DAP/42DAP0.990720.854
47DAP/43DAP1.012770.926
52DAP/47DAP0.958040.777
57DAP/52DAP0.981450.68
57DAP/7DAP0.923831

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.962350.296
17DAP/reference1.02440.477
27DAP/reference1.037340.023
39DAP/reference1.049260.086
41DAP/reference1.089490.177
42DAP/reference1.077710.076
43DAP/reference1.125280.386
47DAP/reference1.159460.259
52DAP/reference1.06510.021
57DAP/reference1.067710.147

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.260750.319
17DAP/reference1.551520.014
27DAP/reference1.587260.026
39DAP/reference1.514910.014
41DAP/reference1.54310.006
42DAP/reference1.426690.01
43DAP/reference1.430570.111
47DAP/reference1.308270.01
52DAP/reference1.438350.006
57DAP/reference1.395980.045

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.077470.469
17DAP/reference1.053480.551
27DAP/reference1.002220.883
39DAP/reference1.129990.042
41DAP/reference1.154310.156
42DAP/reference1.350560.154
43DAP/reference1.392770.09
47DAP/reference1.236580.171
52DAP/reference1.080140.412
57DAP/reference1.416490.022

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.025980.966
26DAP/20DAP1.072850.727
34DAP/26DAP0.975570.961
51DAP/34DAP0.977340.835
52DAP/51DAP1.029210.792
53DAP/52DAP1.033590.882
55DAP/53DAP1.102850.415
57DAP/55DAP1.034540.915
62DAP/57DAP1.082920.902
68DAP/62DAP1.054020.863
68DAP/14DAP0.884411

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.069820.347

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.178980.417
Mature Green Tomato/Ripe Tomato0.96360.611
Immature Eggplant/Mature Eggplant0.992260.912
Ripe Pepper/Ripe Tomato1.138411
Mature Eggplant/Ripe Tomato2.567231

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.941710.944
1-1-2/M820.95921
12-2/M820.956640.955
12-4/M820.982850.619
1-3/M821.029571
2-1-1/M820.888060.465
2-1/M820.87319
2-6/M820.983411
3-2/M820.960881
4-1-1/M821.005211
4-1/M821.015891
4-3-2/M820.907891
4-3/M820.934780.72
5-3/M820.972261
6-2/M820.9721
6-3/M821.021791
7-1/M821.057550.598
7-2/M820.915590.881
9-3-2/M820.851520.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.5550.365
IL2-6/WTpooled0.84178
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.311161
IL12-4/WTpooled1.180980.737
IL1-4/WTpooled1.20381
WT/WTpooled0.991831

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.845360.75

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.004081
DC3000/delta hrp 6h1.38581
DC3000/delta hrp 12h1.307211
DC3000/delta hrp 24h0.89922

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.049430.313
DC3000 delta B/DC3000 delta AB1.076970.415

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.106451
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.008321
Var 0h0.849591
Var 12h I row2-row11.189430.209
Var 12h NI row2-row11.112890.649
Var 36h I row2-row10.879231
Var 36h NI row2-row10.962530.743
Var 60h I row2-row11.068481
Var 60h NI row2-row11.024791
Time course 0hI-0hNI1.030151
Time course 12hI-12hNI1.030180.777
Time course 36hI-36hNI1.03080.513
Time course 60hI-60hNI1.430820.017

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.013280.921
transgenic ySAMdc/azygous control (breaker)1.702930.248
transgenic ySAMdc/azygous control (red)1.295730.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.865630.034

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.425871

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.3750.087
Manapal/WT (break)1.045411
Manapal/WT (red)0.889340.503