Expression of 1-1-6.2.15.18
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.97676 | 0.811 |
27DAP/17DAP | 1.0375 | 1 |
39DAP/27DAP | 1.0284 | 0.876 |
41DAP/39DAP | 1.19462 | 0.37 |
42DAP/41DAP | 1.04456 | 0.983 |
43DAP/42DAP | 0.9753 | 0.914 |
47DAP/43DAP | 0.95713 | 0.828 |
52DAP/47DAP | 1.09324 | 0.844 |
57DAP/52DAP | 0.95168 | 0.803 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.40848 | 0.027 |
17DAP/reference | 1.00515 | 0.874 |
27DAP/reference | 1.12538 | 0.264 |
39DAP/reference | 1.35763 | 0.013 |
41DAP/reference | 1.1043 | 0.145 |
42DAP/reference | 1.34842 | 0.015 |
43DAP/reference | 1.10967 | 0.175 |
47DAP/reference | 1.33036 | 0.001 |
52DAP/reference | 1.70302 | |
57DAP/reference | 1.12041 | 0.355 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.02971 | 0.719 |
27DAP/17DAP | 0.99611 | 0.969 |
39DAP/27DAP | 1.00599 | 0.854 |
41DAP/39DAP | 1.00286 | 1 |
42DAP/41DAP | 1.02728 | 0.852 |
43DAP/42DAP | 0.99072 | 0.854 |
47DAP/43DAP | 1.01277 | 0.926 |
52DAP/47DAP | 0.95804 | 0.777 |
57DAP/52DAP | 0.98145 | 0.68 |
57DAP/7DAP | 0.92383 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.96235 | 0.296 |
17DAP/reference | 1.0244 | 0.477 |
27DAP/reference | 1.03734 | 0.023 |
39DAP/reference | 1.04926 | 0.086 |
41DAP/reference | 1.08949 | 0.177 |
42DAP/reference | 1.07771 | 0.076 |
43DAP/reference | 1.12528 | 0.386 |
47DAP/reference | 1.15946 | 0.259 |
52DAP/reference | 1.0651 | 0.021 |
57DAP/reference | 1.06771 | 0.147 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.26075 | 0.319 |
17DAP/reference | 1.55152 | 0.014 |
27DAP/reference | 1.58726 | 0.026 |
39DAP/reference | 1.51491 | 0.014 |
41DAP/reference | 1.5431 | 0.006 |
42DAP/reference | 1.42669 | 0.01 |
43DAP/reference | 1.43057 | 0.111 |
47DAP/reference | 1.30827 | 0.01 |
52DAP/reference | 1.43835 | 0.006 |
57DAP/reference | 1.39598 | 0.045 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.07747 | 0.469 |
17DAP/reference | 1.05348 | 0.551 |
27DAP/reference | 1.00222 | 0.883 |
39DAP/reference | 1.12999 | 0.042 |
41DAP/reference | 1.15431 | 0.156 |
42DAP/reference | 1.35056 | 0.154 |
43DAP/reference | 1.39277 | 0.09 |
47DAP/reference | 1.23658 | 0.171 |
52DAP/reference | 1.08014 | 0.412 |
57DAP/reference | 1.41649 | 0.022 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.02598 | 0.966 |
26DAP/20DAP | 1.07285 | 0.727 |
34DAP/26DAP | 0.97557 | 0.961 |
51DAP/34DAP | 0.97734 | 0.835 |
52DAP/51DAP | 1.02921 | 0.792 |
53DAP/52DAP | 1.03359 | 0.882 |
55DAP/53DAP | 1.10285 | 0.415 |
57DAP/55DAP | 1.03454 | 0.915 |
62DAP/57DAP | 1.08292 | 0.902 |
68DAP/62DAP | 1.05402 | 0.863 |
68DAP/14DAP | 0.88441 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.06982 | 0.347 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.17898 | 0.417 |
Mature Green Tomato/Ripe Tomato | 0.9636 | 0.611 |
Immature Eggplant/Mature Eggplant | 0.99226 | 0.912 |
Ripe Pepper/Ripe Tomato | 1.13841 | 1 |
Mature Eggplant/Ripe Tomato | 2.56723 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.94171 | 0.944 |
1-1-2/M82 | 0.9592 | 1 |
12-2/M82 | 0.95664 | 0.955 |
12-4/M82 | 0.98285 | 0.619 |
1-3/M82 | 1.02957 | 1 |
2-1-1/M82 | 0.88806 | 0.465 |
2-1/M82 | 0.87319 | |
2-6/M82 | 0.98341 | 1 |
3-2/M82 | 0.96088 | 1 |
4-1-1/M82 | 1.00521 | 1 |
4-1/M82 | 1.01589 | 1 |
4-3-2/M82 | 0.90789 | 1 |
4-3/M82 | 0.93478 | 0.72 |
5-3/M82 | 0.97226 | 1 |
6-2/M82 | 0.972 | 1 |
6-3/M82 | 1.02179 | 1 |
7-1/M82 | 1.05755 | 0.598 |
7-2/M82 | 0.91559 | 0.881 |
9-3-2/M82 | 0.85152 | 0.449 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.555 | 0.365 |
IL2-6/WTpooled | 0.84178 | |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.31116 | 1 |
IL12-4/WTpooled | 1.18098 | 0.737 |
IL1-4/WTpooled | 1.2038 | 1 |
WT/WTpooled | 0.99183 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.84536 | 0.75 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.00408 | 1 |
DC3000/delta hrp 6h | 1.3858 | 1 |
DC3000/delta hrp 12h | 1.30721 | 1 |
DC3000/delta hrp 24h | 0.89922 | |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.04943 | 0.313 |
DC3000 delta B/DC3000 delta AB | 1.07697 | 0.415 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.10645 | 1 |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00832 | 1 |
Var 0h | 0.84959 | 1 |
Var 12h I row2-row1 | 1.18943 | 0.209 |
Var 12h NI row2-row1 | 1.11289 | 0.649 |
Var 36h I row2-row1 | 0.87923 | 1 |
Var 36h NI row2-row1 | 0.96253 | 0.743 |
Var 60h I row2-row1 | 1.06848 | 1 |
Var 60h NI row2-row1 | 1.02479 | 1 |
Time course 0hI-0hNI | 1.03015 | 1 |
Time course 12hI-12hNI | 1.03018 | 0.777 |
Time course 36hI-36hNI | 1.0308 | 0.513 |
Time course 60hI-60hNI | 1.43082 | 0.017 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.01328 | 0.921 |
transgenic ySAMdc/azygous control (breaker) | 1.70293 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.29573 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.86563 | 0.034 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.42587 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.375 | 0.087 |
Manapal/WT (break) | 1.04541 | 1 |
Manapal/WT (red) | 0.88934 | 0.503 |
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