Expression of 1-1-6.2.15.20
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.22655 | 0.485 |
27DAP/17DAP | 1.37787 | 0.613 |
39DAP/27DAP | 1.14649 | 0.841 |
41DAP/39DAP | 1.32515 | 0.423 |
42DAP/41DAP | 0.52961 | 0.397 |
43DAP/42DAP | 1.02541 | 0.937 |
47DAP/43DAP | 0.77291 | 0.326 |
52DAP/47DAP | 1.41867 | 0.43 |
57DAP/52DAP | 0.94049 | 0.94 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.44629 | 0.047 |
17DAP/reference | 1.28997 | 0.016 |
27DAP/reference | 1.10141 | 0.339 |
39DAP/reference | 1.15474 | 0.343 |
41DAP/reference | 1.57458 | 0.014 |
42DAP/reference | 1.22162 | 0.585 |
43DAP/reference | 1.11254 | 0.445 |
47DAP/reference | 1.18148 | 0.05 |
52DAP/reference | 1.23115 | 0.229 |
57DAP/reference | 0.86634 | 0.074 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.0239 | 0.923 |
27DAP/17DAP | 0.95117 | 0.782 |
39DAP/27DAP | 1.19137 | 0.512 |
41DAP/39DAP | 1.14252 | 0.735 |
42DAP/41DAP | 1.19429 | 0.334 |
43DAP/42DAP | 0.91072 | 0.28 |
47DAP/43DAP | 1.08158 | 0.572 |
52DAP/47DAP | 0.80506 | 0.255 |
57DAP/52DAP | 0.84509 | 0.354 |
57DAP/7DAP | 0.95261 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.89008 | 0.157 |
17DAP/reference | 0.9883 | 0.599 |
27DAP/reference | 1.07779 | 0.453 |
39DAP/reference | 0.90144 | 0.23 |
41DAP/reference | 0.92539 | 0.298 |
42DAP/reference | 1.06848 | 0.686 |
43DAP/reference | 0.89975 | 0.126 |
47DAP/reference | 0.89318 | 0.293 |
52DAP/reference | 0.74586 | 0.014 |
57DAP/reference | 0.74453 | 0.008 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.1583 | 0.719 |
17DAP/reference | 1.39247 | 0.092 |
27DAP/reference | 1.33679 | 0.057 |
39DAP/reference | 1.60106 | 0.029 |
41DAP/reference | 1.37643 | 0.014 |
42DAP/reference | 1.32208 | 0.166 |
43DAP/reference | 1.47161 | 0.009 |
47DAP/reference | 1.05614 | 0.695 |
52DAP/reference | 1.52912 | 0.006 |
57DAP/reference | 1.59914 | 0.014 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99208 | 0.607 |
17DAP/reference | 1.17375 | 0.384 |
27DAP/reference | 0.8817 | 0.126 |
39DAP/reference | 0.98441 | 0.591 |
41DAP/reference | 1.01767 | 0.826 |
42DAP/reference | 0.8901 | 0.287 |
43DAP/reference | 1.03257 | 0.738 |
47DAP/reference | 1.26293 | 0.265 |
52DAP/reference | 0.87638 | 0.284 |
57DAP/reference | 0.9961 | 0.682 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.07118 | 0.966 |
26DAP/20DAP | 1.0649 | 1 |
34DAP/26DAP | 1.41515 | 0.114 |
51DAP/34DAP | 1.13578 | 0.2 |
52DAP/51DAP | 0.883 | 1 |
53DAP/52DAP | 1.25989 | 0.502 |
55DAP/53DAP | 0.74023 | 0.243 |
57DAP/55DAP | 1.29783 | 0.764 |
62DAP/57DAP | 1.04382 | 0.994 |
68DAP/62DAP | 0.66871 | 0.378 |
68DAP/14DAP | 0.59468 | 0.09 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.07112 | 0.782 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.79653 | 0.274 |
Mature Green Tomato/Ripe Tomato | 1.77997 | 0.299 |
Immature Eggplant/Mature Eggplant | 0.90375 | 0.651 |
Ripe Pepper/Ripe Tomato | 1.26736 | 1 |
Mature Eggplant/Ripe Tomato | 1.7918 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.21279 | |
1-1-2/M82 | 0.93106 | |
12-2/M82 | 0.9865 | |
12-4/M82 | 0.90632 | 0.619 |
1-3/M82 | 0.75181 | |
2-1-1/M82 | 1.66526 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.01209 | |
3-2/M82 | N/A | N/A |
4-1-1/M82 | 1.03546 | 1 |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 1.24129 | |
4-3/M82 | 1.02565 | |
5-3/M82 | 0.91271 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | 1.00949 | 1 |
7-1/M82 | 1.18268 | |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 1.48992 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.40931 | |
IL2-6/WTpooled | 0.75971 | 0.348 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.49969 | |
IL12-4/WTpooled | 1.73933 | 0.557 |
IL1-4/WTpooled | 1.2175 | 0.426 |
WT/WTpooled | 1.05487 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.98107 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.01401 | 1 |
DC3000/delta hrp 6h | 0.73587 | 0.757 |
DC3000/delta hrp 12h | 1.09885 | 1 |
DC3000/delta hrp 24h | 1.09266 | 0.535 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 2.06898 | |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.00962 | 1 |
Exp 36h | N/A | N/A |
Exp 60h | 1.02821 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99712 | 1 |
Var 0h | 0.90628 | 1 |
Var 12h I row2-row1 | 1.04752 | 0.613 |
Var 12h NI row2-row1 | 1.11314 | 0.34 |
Var 36h I row2-row1 | 0.81341 | 0.908 |
Var 36h NI row2-row1 | 0.87159 | 0.645 |
Var 60h I row2-row1 | 0.72526 | 0.439 |
Var 60h NI row2-row1 | 1.07505 | 0.904 |
Time course 0hI-0hNI | 0.9727 | 0.873 |
Time course 12hI-12hNI | 0.96051 | 0.637 |
Time course 36hI-36hNI | 0.89452 | 0.269 |
Time course 60hI-60hNI | 1.31686 | 0.01 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.90476 | 0.485 |
transgenic ySAMdc/azygous control (breaker) | 1.00584 | 1 |
transgenic ySAMdc/azygous control (red) | 1.00044 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.87614 | 0.049 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.73384 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | 1.03642 | 1 |
Manapal/WT (red) | 0.84511 | 0.424 |
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