Expression of 1-1-6.2.15.20

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.226550.485
27DAP/17DAP1.377870.613
39DAP/27DAP1.146490.841
41DAP/39DAP1.325150.423
42DAP/41DAP0.529610.397
43DAP/42DAP1.025410.937
47DAP/43DAP0.772910.326
52DAP/47DAP1.418670.43
57DAP/52DAP0.940490.94

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.446290.047
17DAP/reference1.289970.016
27DAP/reference1.101410.339
39DAP/reference1.154740.343
41DAP/reference1.574580.014
42DAP/reference1.221620.585
43DAP/reference1.112540.445
47DAP/reference1.181480.05
52DAP/reference1.231150.229
57DAP/reference0.866340.074

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.02390.923
27DAP/17DAP0.951170.782
39DAP/27DAP1.191370.512
41DAP/39DAP1.142520.735
42DAP/41DAP1.194290.334
43DAP/42DAP0.910720.28
47DAP/43DAP1.081580.572
52DAP/47DAP0.805060.255
57DAP/52DAP0.845090.354
57DAP/7DAP0.95261

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.890080.157
17DAP/reference0.98830.599
27DAP/reference1.077790.453
39DAP/reference0.901440.23
41DAP/reference0.925390.298
42DAP/reference1.068480.686
43DAP/reference0.899750.126
47DAP/reference0.893180.293
52DAP/reference0.745860.014
57DAP/reference0.744530.008

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.15830.719
17DAP/reference1.392470.092
27DAP/reference1.336790.057
39DAP/reference1.601060.029
41DAP/reference1.376430.014
42DAP/reference1.322080.166
43DAP/reference1.471610.009
47DAP/reference1.056140.695
52DAP/reference1.529120.006
57DAP/reference1.599140.014

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.992080.607
17DAP/reference1.173750.384
27DAP/reference0.88170.126
39DAP/reference0.984410.591
41DAP/reference1.017670.826
42DAP/reference0.89010.287
43DAP/reference1.032570.738
47DAP/reference1.262930.265
52DAP/reference0.876380.284
57DAP/reference0.99610.682

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.071180.966
26DAP/20DAP1.06491
34DAP/26DAP1.415150.114
51DAP/34DAP1.135780.2
52DAP/51DAP0.8831
53DAP/52DAP1.259890.502
55DAP/53DAP0.740230.243
57DAP/55DAP1.297830.764
62DAP/57DAP1.043820.994
68DAP/62DAP0.668710.378
68DAP/14DAP0.594680.09

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.071120.782

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.796530.274
Mature Green Tomato/Ripe Tomato1.779970.299
Immature Eggplant/Mature Eggplant0.903750.651
Ripe Pepper/Ripe Tomato1.267361
Mature Eggplant/Ripe Tomato1.79180.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.21279
1-1-2/M820.93106
12-2/M820.9865
12-4/M820.906320.619
1-3/M820.75181
2-1-1/M821.66526
2-1/M82N/AN/A
2-6/M821.01209
3-2/M82N/AN/A
4-1-1/M821.035461
4-1/M82N/AN/A
4-3-2/M821.24129
4-3/M821.02565
5-3/M820.912711
6-2/M82N/AN/A
6-3/M821.009491
7-1/M821.18268
7-2/M82N/AN/A
9-3-2/M821.48992

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.40931
IL2-6/WTpooled0.759710.348
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.49969
IL12-4/WTpooled1.739330.557
IL1-4/WTpooled1.21750.426
WT/WTpooled1.054871

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.981071

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.014011
DC3000/delta hrp 6h0.735870.757
DC3000/delta hrp 12h1.098851
DC3000/delta hrp 24h1.092660.535

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB2.06898

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.009621
Exp 36hN/AN/A
Exp 60h1.028211

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.997121
Var 0h0.906281
Var 12h I row2-row11.047520.613
Var 12h NI row2-row11.113140.34
Var 36h I row2-row10.813410.908
Var 36h NI row2-row10.871590.645
Var 60h I row2-row10.725260.439
Var 60h NI row2-row11.075050.904
Time course 0hI-0hNI0.97270.873
Time course 12hI-12hNI0.960510.637
Time course 36hI-36hNI0.894520.269
Time course 60hI-60hNI1.316860.01

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.904760.485
transgenic ySAMdc/azygous control (breaker)1.005841
transgenic ySAMdc/azygous control (red)1.000441

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.876140.049

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.733840.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)1.036421
Manapal/WT (red)0.845110.424