Expression of 1-1-6.2.16.12
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.65004 | 0.244 |
27DAP/17DAP | 1.60931 | 0.741 |
39DAP/27DAP | 1.20304 | 0.919 |
41DAP/39DAP | 1.0204 | 0.958 |
42DAP/41DAP | 1.11117 | 0.999 |
43DAP/42DAP | 1.08815 | 1 |
47DAP/43DAP | 1.26993 | 0.659 |
52DAP/47DAP | 0.99042 | 0.814 |
57DAP/52DAP | 1.11961 | 0.987 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.84718 | 0.066 |
17DAP/reference | 0.9024 | 0.043 |
27DAP/reference | 0.99387 | 0.694 |
39DAP/reference | 0.83803 | 0.018 |
41DAP/reference | 0.6396 | 0.021 |
42DAP/reference | 0.95617 | 0.278 |
43DAP/reference | 0.87294 | 0.088 |
47DAP/reference | 0.86283 | 0.09 |
52DAP/reference | 0.93913 | 0.382 |
57DAP/reference | 1.12246 | 0.229 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.09907 | 0.749 |
27DAP/17DAP | 1.12761 | 0.653 |
39DAP/27DAP | 1.12368 | 0.793 |
41DAP/39DAP | 0.85452 | 0.849 |
42DAP/41DAP | 3.72929 | 0.719 |
43DAP/42DAP | 1.0049 | 1 |
47DAP/43DAP | 0.89679 | 0.543 |
52DAP/47DAP | 1.16045 | 0.645 |
57DAP/52DAP | 1.15398 | 0.363 |
57DAP/7DAP | 1.24438 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.85325 | 0.129 |
17DAP/reference | 0.99486 | 0.518 |
27DAP/reference | 0.91604 | 0.125 |
39DAP/reference | 0.7208 | 0.015 |
41DAP/reference | 0.7419 | 0.032 |
42DAP/reference | 0.66507 | 0.025 |
43DAP/reference | 0.83653 | 0.061 |
47DAP/reference | 0.82914 | 0.101 |
52DAP/reference | 0.85519 | 0.213 |
57DAP/reference | 1.01161 | 0.694 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.02059 | 0.794 |
17DAP/reference | 0.94638 | 0.474 |
27DAP/reference | 1.06604 | 0.81 |
39DAP/reference | 0.9855 | 0.569 |
41DAP/reference | 1.25888 | 0.109 |
42DAP/reference | 1.09285 | 0.715 |
43DAP/reference | 0.78448 | 0.044 |
47DAP/reference | 0.86562 | 0.058 |
52DAP/reference | 0.91998 | 0.351 |
57DAP/reference | 0.77973 | 0.019 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.86217 | 0.127 |
17DAP/reference | 0.86958 | 0.165 |
27DAP/reference | 1.07604 | 0.695 |
39DAP/reference | 0.93841 | 0.271 |
41DAP/reference | 1.42962 | 0.867 |
42DAP/reference | 1.02872 | 1 |
43DAP/reference | 1.03219 | 0.88 |
47DAP/reference | 0.92346 | 0.168 |
52DAP/reference | 0.76064 | 0.242 |
57DAP/reference | 1.074 | 0.636 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.8601 | 1 |
26DAP/20DAP | 0.99439 | 1 |
34DAP/26DAP | 1.39241 | 0.819 |
51DAP/34DAP | 1.27474 | 0.126 |
52DAP/51DAP | 0.80692 | 1 |
53DAP/52DAP | 0.83691 | 0.484 |
55DAP/53DAP | 0.75328 | 0.53 |
57DAP/55DAP | 1.30859 | 0.694 |
62DAP/57DAP | 0.94854 | 0.994 |
68DAP/62DAP | 0.48949 | 0.042 |
68DAP/14DAP | N/A | N/A |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.0692 | 1 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.90434 | |
Mature Green Tomato/Ripe Tomato | 0.58063 | 0.038 |
Immature Eggplant/Mature Eggplant | 0.8666 | 0.329 |
Ripe Pepper/Ripe Tomato | 0.49329 | |
Mature Eggplant/Ripe Tomato | 2.36706 | 0.268 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | 1.1188 | |
12-4/M82 | 0.96221 | 0.619 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | 0.81279 | |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 0.97709 | 1 |
5-3/M82 | 0.84388 | 0.642 |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 1.08809 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.06701 | |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | N/A | N/A |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.00476 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.21516 | 0.894 |
DC3000/delta hrp 6h | 0.71423 | 0.942 |
DC3000/delta hrp 12h | 1.4509 | |
DC3000/delta hrp 24h | 1.55739 | 0.62 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 1.138 | |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.90473 | 1 |
Exp 36h | 0.89025 | 0.82 |
Exp 60h | 0.91205 | 0.586 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.02081 | 1 |
Var 0h | 0.54887 | 0.202 |
Var 12h I row2-row1 | 1.19793 | 0.544 |
Var 12h NI row2-row1 | 0.9091 | 0.141 |
Var 36h I row2-row1 | 0.91226 | 0.575 |
Var 36h NI row2-row1 | 0.74319 | 0.482 |
Var 60h I row2-row1 | 1.01355 | 1 |
Var 60h NI row2-row1 | 1.62088 | 0.904 |
Time course 0hI-0hNI | 1.01709 | 1 |
Time course 12hI-12hNI | 0.99353 | 0.953 |
Time course 36hI-36hNI | 0.83227 | 0.084 |
Time course 60hI-60hNI | 0.93173 | 0.646 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.06184 | 0.261 |
transgenic ySAMdc/azygous control (breaker) | 1.1737 | 0.248 |
transgenic ySAMdc/azygous control (red) | 0.96785 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.40418 | 0.057 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.07082 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.70586 | 0.172 |
Manapal/WT (break) | 0.97849 | 1 |
Manapal/WT (red) | 1.31001 | 0.413 |
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