Expression of 1-1-6.2.16.12

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.650040.244
27DAP/17DAP1.609310.741
39DAP/27DAP1.203040.919
41DAP/39DAP1.02040.958
42DAP/41DAP1.111170.999
43DAP/42DAP1.088151
47DAP/43DAP1.269930.659
52DAP/47DAP0.990420.814
57DAP/52DAP1.119610.987

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.847180.066
17DAP/reference0.90240.043
27DAP/reference0.993870.694
39DAP/reference0.838030.018
41DAP/reference0.63960.021
42DAP/reference0.956170.278
43DAP/reference0.872940.088
47DAP/reference0.862830.09
52DAP/reference0.939130.382
57DAP/reference1.122460.229

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.099070.749
27DAP/17DAP1.127610.653
39DAP/27DAP1.123680.793
41DAP/39DAP0.854520.849
42DAP/41DAP3.729290.719
43DAP/42DAP1.00491
47DAP/43DAP0.896790.543
52DAP/47DAP1.160450.645
57DAP/52DAP1.153980.363
57DAP/7DAP1.244381

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.853250.129
17DAP/reference0.994860.518
27DAP/reference0.916040.125
39DAP/reference0.72080.015
41DAP/reference0.74190.032
42DAP/reference0.665070.025
43DAP/reference0.836530.061
47DAP/reference0.829140.101
52DAP/reference0.855190.213
57DAP/reference1.011610.694

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.020590.794
17DAP/reference0.946380.474
27DAP/reference1.066040.81
39DAP/reference0.98550.569
41DAP/reference1.258880.109
42DAP/reference1.092850.715
43DAP/reference0.784480.044
47DAP/reference0.865620.058
52DAP/reference0.919980.351
57DAP/reference0.779730.019

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.862170.127
17DAP/reference0.869580.165
27DAP/reference1.076040.695
39DAP/reference0.938410.271
41DAP/reference1.429620.867
42DAP/reference1.028721
43DAP/reference1.032190.88
47DAP/reference0.923460.168
52DAP/reference0.760640.242
57DAP/reference1.0740.636

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.86011
26DAP/20DAP0.994391
34DAP/26DAP1.392410.819
51DAP/34DAP1.274740.126
52DAP/51DAP0.806921
53DAP/52DAP0.836910.484
55DAP/53DAP0.753280.53
57DAP/55DAP1.308590.694
62DAP/57DAP0.948540.994
68DAP/62DAP0.489490.042
68DAP/14DAPN/AN/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.06921

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.90434
Mature Green Tomato/Ripe Tomato0.580630.038
Immature Eggplant/Mature Eggplant0.86660.329
Ripe Pepper/Ripe Tomato0.49329
Mature Eggplant/Ripe Tomato2.367060.268

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M821.1188
12-4/M820.962210.619
1-3/M82N/AN/A
2-1-1/M820.81279
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M820.977091
5-3/M820.843880.642
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M821.08809

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.06701
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooledN/AN/A
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.004761

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.215160.894
DC3000/delta hrp 6h0.714230.942
DC3000/delta hrp 12h1.4509
DC3000/delta hrp 24h1.557390.62

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB1.138

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.904731
Exp 36h0.890250.82
Exp 60h0.912050.586

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.020811
Var 0h0.548870.202
Var 12h I row2-row11.197930.544
Var 12h NI row2-row10.90910.141
Var 36h I row2-row10.912260.575
Var 36h NI row2-row10.743190.482
Var 60h I row2-row11.013551
Var 60h NI row2-row11.620880.904
Time course 0hI-0hNI1.017091
Time course 12hI-12hNI0.993530.953
Time course 36hI-36hNI0.832270.084
Time course 60hI-60hNI0.931730.646

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.061840.261
transgenic ySAMdc/azygous control (breaker)1.17370.248
transgenic ySAMdc/azygous control (red)0.967851

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.404180.057

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.070821

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.705860.172
Manapal/WT (break)0.978491
Manapal/WT (red)1.310010.413