Expression of 1-1-6.2.16.5

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.782080.116
27DAP/17DAP0.926520.843
39DAP/27DAP1.365510.254
41DAP/39DAP0.775160.247
42DAP/41DAP0.975011
43DAP/42DAP0.995540.937
47DAP/43DAP1.074630.856
52DAP/47DAP0.857560.612
57DAP/52DAP1.281290.826

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.073330.252
17DAP/reference1.041810.27
27DAP/reference0.950360.286
39DAP/reference0.998220.991
41DAP/reference1.013010.855
42DAP/reference1.065780.219
43DAP/reference0.971510.394
47DAP/reference1.066940.182
52DAP/reference0.947550.237
57DAP/reference0.879350.027

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.08120.431
27DAP/17DAP0.985040.919
39DAP/27DAP0.875020.134
41DAP/39DAP1.066030.88
42DAP/41DAP1.007881
43DAP/42DAP0.836340.025
47DAP/43DAP1.002411
52DAP/47DAP0.924840.304
57DAP/52DAP0.944810.532
57DAP/7DAP0.73181

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.284330.047
17DAP/reference1.535570.007
27DAP/reference1.842680.008
39DAP/reference1.616070.011
41DAP/reference1.686920.013
42DAP/reference1.46240.046
43DAP/reference2.023990.007
47DAP/reference1.562580.13
52DAP/reference1.77480.008
57DAP/reference1.850080.005

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.097980.384
17DAP/reference1.218890.015
27DAP/reference1.051060.692
39DAP/reference1.02081
41DAP/reference1.053790.752
42DAP/reference1.016651
43DAP/reference0.968460.516
47DAP/reference1.009950.916
52DAP/reference1.084370.368
57DAP/reference1.107470.155

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.487690.033
17DAP/reference1.221690.306
27DAP/reference1.796690.029
39DAP/reference1.737190.036
41DAP/reference1.740860.01
42DAP/reference1.510730.016
43DAP/reference1.590440.077
47DAP/reference1.013111
52DAP/reference2.205770.09
57DAP/reference1.199410.814

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.989761
26DAP/20DAP1.227370.404
34DAP/26DAP1.051521
51DAP/34DAP0.79940.116
52DAP/51DAP1.22060.176
53DAP/52DAP0.714150.112
55DAP/53DAP1.445250.046
57DAP/55DAP0.844780.3
62DAP/57DAP1.196690.303
68DAP/62DAP1.007250.863
68DAP/14DAP2.032850.541

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.295420.246

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.942750.591
Mature Green Tomato/Ripe Tomato1.357590.523
Immature Eggplant/Mature Eggplant1.120240.116
Ripe Pepper/Ripe Tomato1.388421
Mature Eggplant/Ripe Tomato3.080170.268

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.03508
1-1-2/M820.79084
12-2/M82N/AN/A
12-4/M821.286221
1-3/M820.5597
2-1-1/M822.09265
2-1/M82N/AN/A
2-6/M821.42541
3-2/M821.03386
4-1-1/M820.73675
4-1/M821.533790.853
4-3-2/M821.38940.284
4-3/M821.224331
5-3/M821.221741
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M821.01037
7-2/M82N/AN/A
9-3-2/M821.22321

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooled0.80253
IL1-4/WTpooledN/AN/A
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.086750.479

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.802780.941
DC3000/delta hrp 6h0.958480.95
DC3000/delta hrp 12h1.148791
DC3000/delta hrp 24h0.634450.034

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.131720.087
DC3000 delta B/DC3000 delta AB1.247350.127

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.065941
Exp 36h0.812840.623
Exp 60h1.091391

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.001491
Var 0h1.242310.594
Var 12h I row2-row10.973080.948
Var 12h NI row2-row11.038151
Var 36h I row2-row11.158760.309
Var 36h NI row2-row10.80290.432
Var 60h I row2-row10.881160.832
Var 60h NI row2-row10.76960.292
Time course 0hI-0hNI0.912470.28
Time course 12hI-12hNI1.09510.544
Time course 36hI-36hNI1.54220.007
Time course 60hI-60hNI2.495730.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.005550.748
transgenic ySAMdc/azygous control (breaker)1.047891
transgenic ySAMdc/azygous control (red)1.049990.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.031790.115

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.065911

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.043650.084
Manapal/WT (break)1.17270.183
Manapal/WT (red)0.921150.728