Expression of 1-1-6.2.16.5
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.78208 | 0.116 |
27DAP/17DAP | 0.92652 | 0.843 |
39DAP/27DAP | 1.36551 | 0.254 |
41DAP/39DAP | 0.77516 | 0.247 |
42DAP/41DAP | 0.97501 | 1 |
43DAP/42DAP | 0.99554 | 0.937 |
47DAP/43DAP | 1.07463 | 0.856 |
52DAP/47DAP | 0.85756 | 0.612 |
57DAP/52DAP | 1.28129 | 0.826 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.07333 | 0.252 |
17DAP/reference | 1.04181 | 0.27 |
27DAP/reference | 0.95036 | 0.286 |
39DAP/reference | 0.99822 | 0.991 |
41DAP/reference | 1.01301 | 0.855 |
42DAP/reference | 1.06578 | 0.219 |
43DAP/reference | 0.97151 | 0.394 |
47DAP/reference | 1.06694 | 0.182 |
52DAP/reference | 0.94755 | 0.237 |
57DAP/reference | 0.87935 | 0.027 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.0812 | 0.431 |
27DAP/17DAP | 0.98504 | 0.919 |
39DAP/27DAP | 0.87502 | 0.134 |
41DAP/39DAP | 1.06603 | 0.88 |
42DAP/41DAP | 1.00788 | 1 |
43DAP/42DAP | 0.83634 | 0.025 |
47DAP/43DAP | 1.00241 | 1 |
52DAP/47DAP | 0.92484 | 0.304 |
57DAP/52DAP | 0.94481 | 0.532 |
57DAP/7DAP | 0.7318 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.28433 | 0.047 |
17DAP/reference | 1.53557 | 0.007 |
27DAP/reference | 1.84268 | 0.008 |
39DAP/reference | 1.61607 | 0.011 |
41DAP/reference | 1.68692 | 0.013 |
42DAP/reference | 1.4624 | 0.046 |
43DAP/reference | 2.02399 | 0.007 |
47DAP/reference | 1.56258 | 0.13 |
52DAP/reference | 1.7748 | 0.008 |
57DAP/reference | 1.85008 | 0.005 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.09798 | 0.384 |
17DAP/reference | 1.21889 | 0.015 |
27DAP/reference | 1.05106 | 0.692 |
39DAP/reference | 1.0208 | 1 |
41DAP/reference | 1.05379 | 0.752 |
42DAP/reference | 1.01665 | 1 |
43DAP/reference | 0.96846 | 0.516 |
47DAP/reference | 1.00995 | 0.916 |
52DAP/reference | 1.08437 | 0.368 |
57DAP/reference | 1.10747 | 0.155 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.48769 | 0.033 |
17DAP/reference | 1.22169 | 0.306 |
27DAP/reference | 1.79669 | 0.029 |
39DAP/reference | 1.73719 | 0.036 |
41DAP/reference | 1.74086 | 0.01 |
42DAP/reference | 1.51073 | 0.016 |
43DAP/reference | 1.59044 | 0.077 |
47DAP/reference | 1.01311 | 1 |
52DAP/reference | 2.20577 | 0.09 |
57DAP/reference | 1.19941 | 0.814 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.98976 | 1 |
26DAP/20DAP | 1.22737 | 0.404 |
34DAP/26DAP | 1.05152 | 1 |
51DAP/34DAP | 0.7994 | 0.116 |
52DAP/51DAP | 1.2206 | 0.176 |
53DAP/52DAP | 0.71415 | 0.112 |
55DAP/53DAP | 1.44525 | 0.046 |
57DAP/55DAP | 0.84478 | 0.3 |
62DAP/57DAP | 1.19669 | 0.303 |
68DAP/62DAP | 1.00725 | 0.863 |
68DAP/14DAP | 2.03285 | 0.541 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.29542 | 0.246 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.94275 | 0.591 |
Mature Green Tomato/Ripe Tomato | 1.35759 | 0.523 |
Immature Eggplant/Mature Eggplant | 1.12024 | 0.116 |
Ripe Pepper/Ripe Tomato | 1.38842 | 1 |
Mature Eggplant/Ripe Tomato | 3.08017 | 0.268 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.03508 | |
1-1-2/M82 | 0.79084 | |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.28622 | 1 |
1-3/M82 | 0.5597 | |
2-1-1/M82 | 2.09265 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.42541 | |
3-2/M82 | 1.03386 | |
4-1-1/M82 | 0.73675 | |
4-1/M82 | 1.53379 | 0.853 |
4-3-2/M82 | 1.3894 | 0.284 |
4-3/M82 | 1.22433 | 1 |
5-3/M82 | 1.22174 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | 1.01037 | |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 1.2232 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | 0.80253 | |
IL1-4/WTpooled | N/A | N/A |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.08675 | 0.479 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.80278 | 0.941 |
DC3000/delta hrp 6h | 0.95848 | 0.95 |
DC3000/delta hrp 12h | 1.14879 | 1 |
DC3000/delta hrp 24h | 0.63445 | 0.034 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.13172 | 0.087 |
DC3000 delta B/DC3000 delta AB | 1.24735 | 0.127 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.06594 | 1 |
Exp 36h | 0.81284 | 0.623 |
Exp 60h | 1.09139 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00149 | 1 |
Var 0h | 1.24231 | 0.594 |
Var 12h I row2-row1 | 0.97308 | 0.948 |
Var 12h NI row2-row1 | 1.03815 | 1 |
Var 36h I row2-row1 | 1.15876 | 0.309 |
Var 36h NI row2-row1 | 0.8029 | 0.432 |
Var 60h I row2-row1 | 0.88116 | 0.832 |
Var 60h NI row2-row1 | 0.7696 | 0.292 |
Time course 0hI-0hNI | 0.91247 | 0.28 |
Time course 12hI-12hNI | 1.0951 | 0.544 |
Time course 36hI-36hNI | 1.5422 | 0.007 |
Time course 60hI-60hNI | 2.49573 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.00555 | 0.748 |
transgenic ySAMdc/azygous control (breaker) | 1.04789 | 1 |
transgenic ySAMdc/azygous control (red) | 1.04999 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.03179 | 0.115 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.06591 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.04365 | 0.084 |
Manapal/WT (break) | 1.1727 | 0.183 |
Manapal/WT (red) | 0.92115 | 0.728 |
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