Expression of 1-1-6.2.16.6

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.382850.545
27DAP/17DAP1.171290.849
39DAP/27DAP1.484030.161
41DAP/39DAP1.131290.758
42DAP/41DAP1.431890.481
43DAP/42DAP1.002830.909
47DAP/43DAP1.095820.702
52DAP/47DAP0.835480.551
57DAP/52DAP1.220350.918

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.163050.48
17DAP/reference0.826760.033
27DAP/reference0.958120.525
39DAP/reference0.82760.048
41DAP/reference0.763990.009
42DAP/reference0.997560.608
43DAP/reference0.93430.48
47DAP/reference1.04270.885
52DAP/reference1.165040.128
57DAP/reference1.086960.27

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.829120.245
27DAP/17DAP1.638140.045
39DAP/27DAP1.213120.262
41DAP/39DAP0.734310.193
42DAP/41DAP1.434870.006
43DAP/42DAP1.334580.061
47DAP/43DAP0.775390.012
52DAP/47DAP0.940640.797
57DAP/52DAP0.700850.114
57DAP/7DAP0.969971

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.055170.732
17DAP/reference1.276920.269
27DAP/reference1.115360.748
39DAP/reference1.103250.282
41DAP/reference1.106940.767
42DAP/reference1.183480.889
43DAP/reference1.021291
47DAP/reference1.108520.659
52DAP/reference1.127520.025
57DAP/reference1.258990.035

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.931350.399
17DAP/reference0.956180.378
27DAP/reference1.080420.488
39DAP/reference1.196710.097
41DAP/reference1.111330.657
42DAP/reference1.062370.621
43DAP/reference0.899980.307
47DAP/reference0.958050.4
52DAP/reference1.102430.3
57DAP/reference0.883760.125

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.184180.287
17DAP/reference1.112750.482
27DAP/reference1.314920.052
39DAP/reference1.191090.018
41DAP/reference1.325550.034
42DAP/reference1.11580.556
43DAP/reference1.57240.014
47DAP/reference1.041410.901
52DAP/reference1.50790.079
57DAP/reference1.261680.033

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.181071
26DAP/20DAP0.70171
34DAP/26DAP0.905670.834
51DAP/34DAP1.556220.55
52DAP/51DAP0.972621
53DAP/52DAP2.149950.552
55DAP/53DAP1.050071
57DAP/55DAP1.133530.898
62DAP/57DAP0.818180.681
68DAP/62DAP1.258470.689
68DAP/14DAP1.217540.558

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker7.810540.021

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.725630.241
Mature Green Tomato/Ripe Tomato0.954470.522
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato1.992740.256
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M821.381121

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooled1.05898
IL1-4/WTpooledN/AN/A
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.030731

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.765111
DC3000/delta hrp 6h1.003090.95
DC3000/delta hrp 12h0.8911
DC3000/delta hrp 24h1.312410.047

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.8513
DC3000 delta B/DC3000 delta AB0.852830.288

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.720781
Exp 36h0.663140.504
Exp 60h0.56910.266

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.989631
Var 0h1.032321
Var 12h I row2-row11.040570.692
Var 12h NI row2-row10.980510.906
Var 36h I row2-row11.044921
Var 36h NI row2-row11.266650.253
Var 60h I row2-row11.176971
Var 60h NI row2-row11.130970.904
Time course 0hI-0hNI1.263080.102
Time course 12hI-12hNI1.026620.82
Time course 36hI-36hNI0.922150.302
Time course 60hI-60hNI0.83320.009

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.095630.36
transgenic ySAMdc/azygous control (breaker)1.0261
transgenic ySAMdc/azygous control (red)1.073820.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.926880.208

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.310050.239

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)2.702620.093
Manapal/WT (break)1.950240.123
Manapal/WT (red)1.549061