Expression of 1-1-6.2.16.6
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.38285 | 0.545 |
27DAP/17DAP | 1.17129 | 0.849 |
39DAP/27DAP | 1.48403 | 0.161 |
41DAP/39DAP | 1.13129 | 0.758 |
42DAP/41DAP | 1.43189 | 0.481 |
43DAP/42DAP | 1.00283 | 0.909 |
47DAP/43DAP | 1.09582 | 0.702 |
52DAP/47DAP | 0.83548 | 0.551 |
57DAP/52DAP | 1.22035 | 0.918 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.16305 | 0.48 |
17DAP/reference | 0.82676 | 0.033 |
27DAP/reference | 0.95812 | 0.525 |
39DAP/reference | 0.8276 | 0.048 |
41DAP/reference | 0.76399 | 0.009 |
42DAP/reference | 0.99756 | 0.608 |
43DAP/reference | 0.9343 | 0.48 |
47DAP/reference | 1.0427 | 0.885 |
52DAP/reference | 1.16504 | 0.128 |
57DAP/reference | 1.08696 | 0.27 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.82912 | 0.245 |
27DAP/17DAP | 1.63814 | 0.045 |
39DAP/27DAP | 1.21312 | 0.262 |
41DAP/39DAP | 0.73431 | 0.193 |
42DAP/41DAP | 1.43487 | 0.006 |
43DAP/42DAP | 1.33458 | 0.061 |
47DAP/43DAP | 0.77539 | 0.012 |
52DAP/47DAP | 0.94064 | 0.797 |
57DAP/52DAP | 0.70085 | 0.114 |
57DAP/7DAP | 0.96997 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.05517 | 0.732 |
17DAP/reference | 1.27692 | 0.269 |
27DAP/reference | 1.11536 | 0.748 |
39DAP/reference | 1.10325 | 0.282 |
41DAP/reference | 1.10694 | 0.767 |
42DAP/reference | 1.18348 | 0.889 |
43DAP/reference | 1.02129 | 1 |
47DAP/reference | 1.10852 | 0.659 |
52DAP/reference | 1.12752 | 0.025 |
57DAP/reference | 1.25899 | 0.035 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.93135 | 0.399 |
17DAP/reference | 0.95618 | 0.378 |
27DAP/reference | 1.08042 | 0.488 |
39DAP/reference | 1.19671 | 0.097 |
41DAP/reference | 1.11133 | 0.657 |
42DAP/reference | 1.06237 | 0.621 |
43DAP/reference | 0.89998 | 0.307 |
47DAP/reference | 0.95805 | 0.4 |
52DAP/reference | 1.10243 | 0.3 |
57DAP/reference | 0.88376 | 0.125 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.18418 | 0.287 |
17DAP/reference | 1.11275 | 0.482 |
27DAP/reference | 1.31492 | 0.052 |
39DAP/reference | 1.19109 | 0.018 |
41DAP/reference | 1.32555 | 0.034 |
42DAP/reference | 1.1158 | 0.556 |
43DAP/reference | 1.5724 | 0.014 |
47DAP/reference | 1.04141 | 0.901 |
52DAP/reference | 1.5079 | 0.079 |
57DAP/reference | 1.26168 | 0.033 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.18107 | 1 |
26DAP/20DAP | 0.7017 | 1 |
34DAP/26DAP | 0.90567 | 0.834 |
51DAP/34DAP | 1.55622 | 0.55 |
52DAP/51DAP | 0.97262 | 1 |
53DAP/52DAP | 2.14995 | 0.552 |
55DAP/53DAP | 1.05007 | 1 |
57DAP/55DAP | 1.13353 | 0.898 |
62DAP/57DAP | 0.81818 | 0.681 |
68DAP/62DAP | 1.25847 | 0.689 |
68DAP/14DAP | 1.21754 | 0.558 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 7.81054 | 0.021 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.72563 | 0.241 |
Mature Green Tomato/Ripe Tomato | 0.95447 | 0.522 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 1.99274 | 0.256 |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 1.38112 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | 1.05898 | |
IL1-4/WTpooled | N/A | N/A |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.03073 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.76511 | 1 |
DC3000/delta hrp 6h | 1.00309 | 0.95 |
DC3000/delta hrp 12h | 0.891 | 1 |
DC3000/delta hrp 24h | 1.31241 | 0.047 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.8513 | |
DC3000 delta B/DC3000 delta AB | 0.85283 | 0.288 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.72078 | 1 |
Exp 36h | 0.66314 | 0.504 |
Exp 60h | 0.5691 | 0.266 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.98963 | 1 |
Var 0h | 1.03232 | 1 |
Var 12h I row2-row1 | 1.04057 | 0.692 |
Var 12h NI row2-row1 | 0.98051 | 0.906 |
Var 36h I row2-row1 | 1.04492 | 1 |
Var 36h NI row2-row1 | 1.26665 | 0.253 |
Var 60h I row2-row1 | 1.17697 | 1 |
Var 60h NI row2-row1 | 1.13097 | 0.904 |
Time course 0hI-0hNI | 1.26308 | 0.102 |
Time course 12hI-12hNI | 1.02662 | 0.82 |
Time course 36hI-36hNI | 0.92215 | 0.302 |
Time course 60hI-60hNI | 0.8332 | 0.009 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.09563 | 0.36 |
transgenic ySAMdc/azygous control (breaker) | 1.026 | 1 |
transgenic ySAMdc/azygous control (red) | 1.07382 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.92688 | 0.208 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.31005 | 0.239 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 2.70262 | 0.093 |
Manapal/WT (break) | 1.95024 | 0.123 |
Manapal/WT (red) | 1.54906 | 1 |
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