Expression of 1-1-6.2.16.7

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.158310.697
27DAP/17DAP1.080.874
39DAP/27DAP1.239250.59
41DAP/39DAP0.938390.711
42DAP/41DAP0.982711
43DAP/42DAP1.256590.756
47DAP/43DAP1.095580.647
52DAP/47DAP0.853780.607
57DAP/52DAP1.098720.977

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.050910.685
17DAP/reference0.97090.597
27DAP/reference1.033830.637
39DAP/reference0.952930.298
41DAP/reference1.02340.587
42DAP/reference1.139340.007
43DAP/reference0.992310.82
47DAP/reference1.064160.136
52DAP/reference1.183070.176
57DAP/reference1.007650.845

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.952590.578
27DAP/17DAP0.998270.969
39DAP/27DAP1.127180.262
41DAP/39DAP0.818220.228
42DAP/41DAP0.932480.524
43DAP/42DAP0.992140.991
47DAP/43DAP1.000411
52DAP/47DAP0.914940.316
57DAP/52DAP0.956240.626
57DAP/7DAP1.197540.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.01997
17DAP/reference0.950950.082
27DAP/reference0.878060.016
39DAP/reference1.017730.511
41DAP/reference0.990940.741
42DAP/reference0.97880.371
43DAP/reference0.925350.042
47DAP/reference0.870730.066
52DAP/reference1.004230.802
57DAP/reference1.063190.147

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.061540.704
17DAP/reference1.201360.058
27DAP/reference1.221960.203
39DAP/reference1.286690.068
41DAP/reference1.370770.028
42DAP/reference1.153380.254
43DAP/reference1.11150.457
47DAP/reference1.057820.264
52DAP/reference1.223780.009
57DAP/reference1.092230.334

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.048951
17DAP/reference1.037040.62
27DAP/reference1.016970.695
39DAP/reference1.049610.078
41DAP/reference1.008291
42DAP/reference0.995920.816
43DAP/reference1.252450.168
47DAP/reference0.937350.224
52DAP/reference0.93730.518
57DAP/reference1.315030.135

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.128690.966
26DAP/20DAP0.795410.512
34DAP/26DAP1.155240.819
51DAP/34DAP1.051460.949
52DAP/51DAP0.939610.079
53DAP/52DAP1.091990.565
55DAP/53DAP1.129510.645
57DAP/55DAP1.096180.947
62DAP/57DAP1.160670.935
68DAP/62DAP0.977350.787
68DAP/14DAP1.761120.211

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.831780.102

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.639140.215
Mature Green Tomato/Ripe Tomato1.539520.399
Immature Eggplant/Mature Eggplant1.254480.165
Ripe Pepper/Ripe Tomato0.3850.224
Mature Eggplant/Ripe Tomato0.342590.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.827250.56
1-1-2/M821.34022
12-2/M82N/AN/A
12-4/M821.3170.611
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M821.15101
3-2/M820.97259
4-1-1/M820.96672
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M820.71983
5-3/M820.891670.642
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M820.84112
7-2/M82N/AN/A
9-3-2/M821.11798

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooled1.1786
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.10870.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.973561
DC3000/delta hrp 6h1.072461
DC3000/delta hrp 12h1.157121
DC3000/delta hrp 24h1.134620.192

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.932130.513
DC3000 delta B/DC3000 delta AB0.972860.805

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.266281
Exp 36h1.085090.693
Exp 60h1.060490.237

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.973351
Var 0h0.657941
Var 12h I row2-row10.934440.514
Var 12h NI row2-row10.828280.443
Var 36h I row2-row10.88090.805
Var 36h NI row2-row10.93690.743
Var 60h I row2-row11.002071
Var 60h NI row2-row11.05690.904
Time course 0hI-0hNI1.075330.574
Time course 12hI-12hNI0.966930.782
Time course 36hI-36hNI0.872730.077
Time course 60hI-60hNI0.736130.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.60990.321
transgenic ySAMdc/azygous control (breaker)0.610090.125
transgenic ySAMdc/azygous control (red)1.149150.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.94180.06

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.588890.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.01081
Manapal/WT (break)1.012091
Manapal/WT (red)1.287120.222