Expression of 1-1-6.2.16.7
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.15831 | 0.697 |
27DAP/17DAP | 1.08 | 0.874 |
39DAP/27DAP | 1.23925 | 0.59 |
41DAP/39DAP | 0.93839 | 0.711 |
42DAP/41DAP | 0.98271 | 1 |
43DAP/42DAP | 1.25659 | 0.756 |
47DAP/43DAP | 1.09558 | 0.647 |
52DAP/47DAP | 0.85378 | 0.607 |
57DAP/52DAP | 1.09872 | 0.977 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.05091 | 0.685 |
17DAP/reference | 0.9709 | 0.597 |
27DAP/reference | 1.03383 | 0.637 |
39DAP/reference | 0.95293 | 0.298 |
41DAP/reference | 1.0234 | 0.587 |
42DAP/reference | 1.13934 | 0.007 |
43DAP/reference | 0.99231 | 0.82 |
47DAP/reference | 1.06416 | 0.136 |
52DAP/reference | 1.18307 | 0.176 |
57DAP/reference | 1.00765 | 0.845 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.95259 | 0.578 |
27DAP/17DAP | 0.99827 | 0.969 |
39DAP/27DAP | 1.12718 | 0.262 |
41DAP/39DAP | 0.81822 | 0.228 |
42DAP/41DAP | 0.93248 | 0.524 |
43DAP/42DAP | 0.99214 | 0.991 |
47DAP/43DAP | 1.00041 | 1 |
52DAP/47DAP | 0.91494 | 0.316 |
57DAP/52DAP | 0.95624 | 0.626 |
57DAP/7DAP | 1.19754 | 0.365 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.01997 | |
17DAP/reference | 0.95095 | 0.082 |
27DAP/reference | 0.87806 | 0.016 |
39DAP/reference | 1.01773 | 0.511 |
41DAP/reference | 0.99094 | 0.741 |
42DAP/reference | 0.9788 | 0.371 |
43DAP/reference | 0.92535 | 0.042 |
47DAP/reference | 0.87073 | 0.066 |
52DAP/reference | 1.00423 | 0.802 |
57DAP/reference | 1.06319 | 0.147 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.06154 | 0.704 |
17DAP/reference | 1.20136 | 0.058 |
27DAP/reference | 1.22196 | 0.203 |
39DAP/reference | 1.28669 | 0.068 |
41DAP/reference | 1.37077 | 0.028 |
42DAP/reference | 1.15338 | 0.254 |
43DAP/reference | 1.1115 | 0.457 |
47DAP/reference | 1.05782 | 0.264 |
52DAP/reference | 1.22378 | 0.009 |
57DAP/reference | 1.09223 | 0.334 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04895 | 1 |
17DAP/reference | 1.03704 | 0.62 |
27DAP/reference | 1.01697 | 0.695 |
39DAP/reference | 1.04961 | 0.078 |
41DAP/reference | 1.00829 | 1 |
42DAP/reference | 0.99592 | 0.816 |
43DAP/reference | 1.25245 | 0.168 |
47DAP/reference | 0.93735 | 0.224 |
52DAP/reference | 0.9373 | 0.518 |
57DAP/reference | 1.31503 | 0.135 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.12869 | 0.966 |
26DAP/20DAP | 0.79541 | 0.512 |
34DAP/26DAP | 1.15524 | 0.819 |
51DAP/34DAP | 1.05146 | 0.949 |
52DAP/51DAP | 0.93961 | 0.079 |
53DAP/52DAP | 1.09199 | 0.565 |
55DAP/53DAP | 1.12951 | 0.645 |
57DAP/55DAP | 1.09618 | 0.947 |
62DAP/57DAP | 1.16067 | 0.935 |
68DAP/62DAP | 0.97735 | 0.787 |
68DAP/14DAP | 1.76112 | 0.211 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.83178 | 0.102 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.63914 | 0.215 |
Mature Green Tomato/Ripe Tomato | 1.53952 | 0.399 |
Immature Eggplant/Mature Eggplant | 1.25448 | 0.165 |
Ripe Pepper/Ripe Tomato | 0.385 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.34259 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.82725 | 0.56 |
1-1-2/M82 | 1.34022 | |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.317 | 0.611 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.15101 | |
3-2/M82 | 0.97259 | |
4-1-1/M82 | 0.96672 | |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 0.71983 | |
5-3/M82 | 0.89167 | 0.642 |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | 0.84112 | |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 1.11798 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | 1.1786 | |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.1087 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.97356 | 1 |
DC3000/delta hrp 6h | 1.07246 | 1 |
DC3000/delta hrp 12h | 1.15712 | 1 |
DC3000/delta hrp 24h | 1.13462 | 0.192 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.93213 | 0.513 |
DC3000 delta B/DC3000 delta AB | 0.97286 | 0.805 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.26628 | 1 |
Exp 36h | 1.08509 | 0.693 |
Exp 60h | 1.06049 | 0.237 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.97335 | 1 |
Var 0h | 0.65794 | 1 |
Var 12h I row2-row1 | 0.93444 | 0.514 |
Var 12h NI row2-row1 | 0.82828 | 0.443 |
Var 36h I row2-row1 | 0.8809 | 0.805 |
Var 36h NI row2-row1 | 0.9369 | 0.743 |
Var 60h I row2-row1 | 1.00207 | 1 |
Var 60h NI row2-row1 | 1.0569 | 0.904 |
Time course 0hI-0hNI | 1.07533 | 0.574 |
Time course 12hI-12hNI | 0.96693 | 0.782 |
Time course 36hI-36hNI | 0.87273 | 0.077 |
Time course 60hI-60hNI | 0.73613 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.6099 | 0.321 |
transgenic ySAMdc/azygous control (breaker) | 0.61009 | 0.125 |
transgenic ySAMdc/azygous control (red) | 1.14915 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.9418 | 0.06 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.58889 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.0108 | 1 |
Manapal/WT (break) | 1.01209 | 1 |
Manapal/WT (red) | 1.28712 | 0.222 |
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