Expression of 1-1-6.2.17.18
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.94277 | 0.627 |
27DAP/17DAP | 0.95223 | 0.882 |
39DAP/27DAP | 1.10505 | 0.899 |
41DAP/39DAP | 0.913 | 0.772 |
42DAP/41DAP | 1.09635 | 0.937 |
43DAP/42DAP | 1.02771 | 1 |
47DAP/43DAP | 0.96166 | 0.828 |
52DAP/47DAP | 1.17019 | 0.832 |
57DAP/52DAP | 0.95264 | 0.956 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.31047 | 0.23 |
17DAP/reference | 1.07715 | 0.696 |
27DAP/reference | 1.14171 | 0.457 |
39DAP/reference | 1.12923 | 0.218 |
41DAP/reference | 1.17828 | 0.012 |
42DAP/reference | 1.04799 | 0.425 |
43DAP/reference | 1.09425 | 0.445 |
47DAP/reference | 1.21048 | 0.096 |
52DAP/reference | 1.40259 | 0.021 |
57DAP/reference | 1.12658 | 0.344 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.85161 | 0.454 |
27DAP/17DAP | 1.202 | 0.658 |
39DAP/27DAP | 0.97958 | 0.859 |
41DAP/39DAP | 1.02521 | 0.909 |
42DAP/41DAP | 1.1132 | 0.836 |
43DAP/42DAP | 1.16079 | 0.513 |
47DAP/43DAP | 1.12068 | 0.837 |
52DAP/47DAP | 1.1741 | 0.512 |
57DAP/52DAP | 1.13834 | 0.718 |
57DAP/7DAP | 0.90198 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 3.55432 | 0.024 |
17DAP/reference | 4.15248 | 0.006 |
27DAP/reference | 4.06921 | 0.006 |
39DAP/reference | 6.16908 | 0.005 |
41DAP/reference | 6.05688 | 0.007 |
42DAP/reference | 6.88634 | 0.006 |
43DAP/reference | 7.52006 | 0.006 |
47DAP/reference | 5.44429 | 0.018 |
52DAP/reference | 5.20298 | 0.007 |
57DAP/reference | 4.85697 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.1293 | 0.97 |
17DAP/reference | 1.20041 | 0.674 |
27DAP/reference | 1.24272 | 0.437 |
39DAP/reference | 1.27956 | 0.764 |
41DAP/reference | 1.26758 | 0.017 |
42DAP/reference | 1.33372 | 0.019 |
43DAP/reference | 0.93791 | 0.404 |
47DAP/reference | 1.1457 | 0.092 |
52DAP/reference | 1.27985 | 0.011 |
57DAP/reference | 1.07555 | 0.771 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 3.16994 | 0.015 |
17DAP/reference | 1.97323 | 0.224 |
27DAP/reference | 4.06264 | 0.012 |
39DAP/reference | 3.26962 | 0.012 |
41DAP/reference | 3.27153 | 0.007 |
42DAP/reference | 3.36338 | 0.012 |
43DAP/reference | 2.85638 | 0.042 |
47DAP/reference | 1.47385 | 0.187 |
52DAP/reference | 6.06172 | 0.031 |
57DAP/reference | 2.99727 | 0.129 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.7286 | |
26DAP/20DAP | 0.96342 | 1 |
34DAP/26DAP | 1.21358 | 1 |
51DAP/34DAP | 0.78919 | 0.341 |
52DAP/51DAP | 1.35281 | 0.503 |
53DAP/52DAP | 0.85194 | 0.254 |
55DAP/53DAP | 0.9725 | 0.82 |
57DAP/55DAP | 0.98157 | 0.828 |
62DAP/57DAP | 1.10401 | 1 |
68DAP/62DAP | 1.77476 | 0.737 |
68DAP/14DAP | 1.94849 | 0.146 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.28582 | 0.591 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.78564 | |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.31425 | |
Mature Eggplant/Ripe Tomato | 0.29384 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.99047 | |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.0643 | 0.611 |
1-3/M82 | 1.40156 | |
2-1-1/M82 | 1.4053 | |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | 0.92635 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 0.89282 | |
5-3/M82 | 0.928 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | 0.74081 | |
7-1/M82 | 0.87101 | |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 1.33788 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.18266 | 0.659 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.88885 | |
IL12-4/WTpooled | 0.97499 | 1 |
IL1-4/WTpooled | 1.30207 | 1 |
WT/WTpooled | 1.05772 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.93904 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.98607 | 1 |
DC3000/delta hrp 6h | 0.92145 | |
DC3000/delta hrp 12h | 1.1936 | 1 |
DC3000/delta hrp 24h | 0.96261 | 0.769 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 2.37399 | |
DC3000 delta B/DC3000 delta AB | 1.09861 | 0.565 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.03337 | 1 |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.0308 | 1 |
Var 0h | 1.24256 | 0.98 |
Var 12h I row2-row1 | 1.10535 | 0.379 |
Var 12h NI row2-row1 | 1.11151 | 1 |
Var 36h I row2-row1 | 1.0808 | 0.298 |
Var 36h NI row2-row1 | 1.2135 | 1 |
Var 60h I row2-row1 | 0.9617 | 0.285 |
Var 60h NI row2-row1 | 0.75689 | 1 |
Time course 0hI-0hNI | 0.93379 | 0.309 |
Time course 12hI-12hNI | 0.90702 | 0.324 |
Time course 36hI-36hNI | 0.77459 | 0.023 |
Time course 60hI-60hNI | 0.59137 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | 1.09703 | 1 |
transgenic ySAMdc/azygous control (red) | 0.85432 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.16816 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | N/A | N/A |
Manapal/WT (red) | 1.52098 | 0.137 |
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