Expression of 1-1-6.2.17.18

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.942770.627
27DAP/17DAP0.952230.882
39DAP/27DAP1.105050.899
41DAP/39DAP0.9130.772
42DAP/41DAP1.096350.937
43DAP/42DAP1.027711
47DAP/43DAP0.961660.828
52DAP/47DAP1.170190.832
57DAP/52DAP0.952640.956

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.310470.23
17DAP/reference1.077150.696
27DAP/reference1.141710.457
39DAP/reference1.129230.218
41DAP/reference1.178280.012
42DAP/reference1.047990.425
43DAP/reference1.094250.445
47DAP/reference1.210480.096
52DAP/reference1.402590.021
57DAP/reference1.126580.344

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.851610.454
27DAP/17DAP1.2020.658
39DAP/27DAP0.979580.859
41DAP/39DAP1.025210.909
42DAP/41DAP1.11320.836
43DAP/42DAP1.160790.513
47DAP/43DAP1.120680.837
52DAP/47DAP1.17410.512
57DAP/52DAP1.138340.718
57DAP/7DAP0.901981

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference3.554320.024
17DAP/reference4.152480.006
27DAP/reference4.069210.006
39DAP/reference6.169080.005
41DAP/reference6.056880.007
42DAP/reference6.886340.006
43DAP/reference7.520060.006
47DAP/reference5.444290.018
52DAP/reference5.202980.007
57DAP/reference4.856970.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.12930.97
17DAP/reference1.200410.674
27DAP/reference1.242720.437
39DAP/reference1.279560.764
41DAP/reference1.267580.017
42DAP/reference1.333720.019
43DAP/reference0.937910.404
47DAP/reference1.14570.092
52DAP/reference1.279850.011
57DAP/reference1.075550.771

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference3.169940.015
17DAP/reference1.973230.224
27DAP/reference4.062640.012
39DAP/reference3.269620.012
41DAP/reference3.271530.007
42DAP/reference3.363380.012
43DAP/reference2.856380.042
47DAP/reference1.473850.187
52DAP/reference6.061720.031
57DAP/reference2.997270.129

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.7286
26DAP/20DAP0.963421
34DAP/26DAP1.213581
51DAP/34DAP0.789190.341
52DAP/51DAP1.352810.503
53DAP/52DAP0.851940.254
55DAP/53DAP0.97250.82
57DAP/55DAP0.981570.828
62DAP/57DAP1.104011
68DAP/62DAP1.774760.737
68DAP/14DAP1.948490.146

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.285820.591

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.78564
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.31425
Mature Eggplant/Ripe Tomato0.293840.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.99047
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M821.06430.611
1-3/M821.40156
2-1-1/M821.4053
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M820.92635
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M820.89282
5-3/M820.9281
6-2/M82N/AN/A
6-3/M820.74081
7-1/M820.87101
7-2/M82N/AN/A
9-3-2/M821.33788

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.182660.659
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.88885
IL12-4/WTpooled0.974991
IL1-4/WTpooled1.302071
WT/WTpooled1.057721

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.939040.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.986071
DC3000/delta hrp 6h0.92145
DC3000/delta hrp 12h1.19361
DC3000/delta hrp 24h0.962610.769

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB2.37399
DC3000 delta B/DC3000 delta AB1.098610.565

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.033371
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.03081
Var 0h1.242560.98
Var 12h I row2-row11.105350.379
Var 12h NI row2-row11.111511
Var 36h I row2-row11.08080.298
Var 36h NI row2-row11.21351
Var 60h I row2-row10.96170.285
Var 60h NI row2-row10.756891
Time course 0hI-0hNI0.933790.309
Time course 12hI-12hNI0.907020.324
Time course 36hI-36hNI0.774590.023
Time course 60hI-60hNI0.591370.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)1.097031
transgenic ySAMdc/azygous control (red)0.854321

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.168161

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)1.520980.137