Expression of 1-1-6.2.18.1
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.26773 | 0.403 |
27DAP/17DAP | 1.03156 | 1 |
39DAP/27DAP | 0.85361 | 0.487 |
41DAP/39DAP | 1.03721 | 0.904 |
42DAP/41DAP | 1.04047 | 0.983 |
43DAP/42DAP | 1.32392 | 0.569 |
47DAP/43DAP | 1.4358 | 0.52 |
52DAP/47DAP | 0.93142 | 0.769 |
57DAP/52DAP | 1.22887 | 0.969 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.09244 | 0.32 |
17DAP/reference | 0.95588 | 0.278 |
27DAP/reference | 1.00566 | 1 |
39DAP/reference | 1.09804 | 0.368 |
41DAP/reference | 1.04552 | 0.516 |
42DAP/reference | 1.03996 | 1 |
43DAP/reference | 0.93158 | 0.135 |
47DAP/reference | 1.05128 | 0.463 |
52DAP/reference | 0.98552 | 0.58 |
57DAP/reference | 0.7641 | 0.018 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.99931 | 0.871 |
27DAP/17DAP | 0.94105 | 0.684 |
39DAP/27DAP | 1.09323 | 0.483 |
41DAP/39DAP | 1.01384 | 1 |
42DAP/41DAP | 0.97542 | 0.759 |
43DAP/42DAP | 1.0653 | 0.513 |
47DAP/43DAP | 1.05476 | 0.749 |
52DAP/47DAP | 1.04278 | 0.835 |
57DAP/52DAP | 1.11638 | 0.414 |
57DAP/7DAP | 0.90084 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04884 | 1 |
17DAP/reference | 0.95615 | 0.389 |
27DAP/reference | 1.05726 | 0.551 |
39DAP/reference | 0.84004 | 0.073 |
41DAP/reference | 1.04558 | 0.811 |
42DAP/reference | 0.97793 | 0.554 |
43DAP/reference | 0.94576 | 0.368 |
47DAP/reference | 0.79372 | 0.222 |
52DAP/reference | 1.00876 | 0.74 |
57DAP/reference | 1.01918 | 0.907 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.2268 | 0.144 |
17DAP/reference | 1.08228 | 0.599 |
27DAP/reference | 1.10822 | 0.488 |
39DAP/reference | 0.97017 | 0.497 |
41DAP/reference | 1.07856 | 1 |
42DAP/reference | 1.05857 | 0.951 |
43DAP/reference | 1.08149 | 0.688 |
47DAP/reference | 0.99496 | 0.678 |
52DAP/reference | 1.07852 | 0.559 |
57DAP/reference | 1.20851 | 0.155 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.9211 | 0.391 |
17DAP/reference | 0.82684 | 0.109 |
27DAP/reference | 0.92361 | 0.286 |
39DAP/reference | 0.93713 | 0.246 |
41DAP/reference | 0.83966 | 0.096 |
42DAP/reference | 0.80799 | 0.049 |
43DAP/reference | 0.921 | 0.365 |
47DAP/reference | 1.03783 | 0.901 |
52DAP/reference | 1.98642 | 0.377 |
57DAP/reference | 1.14132 | 0.491 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.97019 | 1 |
26DAP/20DAP | 0.79286 | 0.512 |
34DAP/26DAP | 1.13133 | 1 |
51DAP/34DAP | 1.19418 | 0.084 |
52DAP/51DAP | 0.98631 | 1 |
53DAP/52DAP | 1.17385 | 0.284 |
55DAP/53DAP | 1.15238 | 0.361 |
57DAP/55DAP | 1.1822 | 0.955 |
62DAP/57DAP | 1.07959 | 0.678 |
68DAP/62DAP | 1.12466 | 0.767 |
68DAP/14DAP | 1.26741 | 0.87 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.74952 | 0.032 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.40169 | 0.08 |
Mature Green Tomato/Ripe Tomato | 0.86943 | 0.317 |
Immature Eggplant/Mature Eggplant | 1.83897 | 0.054 |
Ripe Pepper/Ripe Tomato | 3.92204 | 0.258 |
Mature Eggplant/Ripe Tomato | 0.59628 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 0.66908 | |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.77364 | 0.619 |
1-3/M82 | 0.75382 | |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.18267 | 0.395 |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 0.92989 | 1 |
4-3/M82 | N/A | N/A |
5-3/M82 | 0.8346 | 0.642 |
6-2/M82 | N/A | N/A |
6-3/M82 | 1.25459 | |
7-1/M82 | 0.89674 | |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 0.91481 | 0.449 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.21423 | 0.441 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.05595 | |
IL12-4/WTpooled | 1.23712 | 0.538 |
IL1-4/WTpooled | 1.10838 | 1 |
WT/WTpooled | 1.04858 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.38256 | 0.479 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.16252 | 0.921 |
DC3000/delta hrp 6h | 0.90651 | 0.95 |
DC3000/delta hrp 12h | 1.06366 | 1 |
DC3000/delta hrp 24h | 1.47665 | 0.232 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.2985 | 0.073 |
DC3000 delta B/DC3000 delta AB | 0.94428 | 0.511 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | 1.25769 | 1 |
Exp 60h | 1.12803 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.9837 | 1 |
Var 0h | 0.92799 | 1 |
Var 12h I row2-row1 | 1.00222 | 1 |
Var 12h NI row2-row1 | 0.94122 | 0.82 |
Var 36h I row2-row1 | 1.03595 | 1 |
Var 36h NI row2-row1 | 0.96948 | 0.791 |
Var 60h I row2-row1 | 0.87957 | 0.285 |
Var 60h NI row2-row1 | 1.03388 | 1 |
Time course 0hI-0hNI | 1.00104 | 1 |
Time course 12hI-12hNI | 1.04265 | 0.672 |
Time course 36hI-36hNI | 1.25011 | 0.07 |
Time course 60hI-60hNI | 2.90892 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.91514 | 0.567 |
transgenic ySAMdc/azygous control (breaker) | 0.67117 | 0.139 |
transgenic ySAMdc/azygous control (red) | 1.08454 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.06485 | 0.135 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.59741 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 2.30684 | 0.14 |
Manapal/WT (break) | 1.6863 | 0.183 |
Manapal/WT (red) | 1.70875 | 0.413 |
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