Expression of 1-1-6.2.18.1

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.267730.403
27DAP/17DAP1.031561
39DAP/27DAP0.853610.487
41DAP/39DAP1.037210.904
42DAP/41DAP1.040470.983
43DAP/42DAP1.323920.569
47DAP/43DAP1.43580.52
52DAP/47DAP0.931420.769
57DAP/52DAP1.228870.969

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.092440.32
17DAP/reference0.955880.278
27DAP/reference1.005661
39DAP/reference1.098040.368
41DAP/reference1.045520.516
42DAP/reference1.039961
43DAP/reference0.931580.135
47DAP/reference1.051280.463
52DAP/reference0.985520.58
57DAP/reference0.76410.018

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.999310.871
27DAP/17DAP0.941050.684
39DAP/27DAP1.093230.483
41DAP/39DAP1.013841
42DAP/41DAP0.975420.759
43DAP/42DAP1.06530.513
47DAP/43DAP1.054760.749
52DAP/47DAP1.042780.835
57DAP/52DAP1.116380.414
57DAP/7DAP0.900841

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.048841
17DAP/reference0.956150.389
27DAP/reference1.057260.551
39DAP/reference0.840040.073
41DAP/reference1.045580.811
42DAP/reference0.977930.554
43DAP/reference0.945760.368
47DAP/reference0.793720.222
52DAP/reference1.008760.74
57DAP/reference1.019180.907

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.22680.144
17DAP/reference1.082280.599
27DAP/reference1.108220.488
39DAP/reference0.970170.497
41DAP/reference1.078561
42DAP/reference1.058570.951
43DAP/reference1.081490.688
47DAP/reference0.994960.678
52DAP/reference1.078520.559
57DAP/reference1.208510.155

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.92110.391
17DAP/reference0.826840.109
27DAP/reference0.923610.286
39DAP/reference0.937130.246
41DAP/reference0.839660.096
42DAP/reference0.807990.049
43DAP/reference0.9210.365
47DAP/reference1.037830.901
52DAP/reference1.986420.377
57DAP/reference1.141320.491

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.970191
26DAP/20DAP0.792860.512
34DAP/26DAP1.131331
51DAP/34DAP1.194180.084
52DAP/51DAP0.986311
53DAP/52DAP1.173850.284
55DAP/53DAP1.152380.361
57DAP/55DAP1.18220.955
62DAP/57DAP1.079590.678
68DAP/62DAP1.124660.767
68DAP/14DAP1.267410.87

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.749520.032

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.401690.08
Mature Green Tomato/Ripe Tomato0.869430.317
Immature Eggplant/Mature Eggplant1.838970.054
Ripe Pepper/Ripe Tomato3.922040.258
Mature Eggplant/Ripe Tomato0.596281

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M820.66908
12-2/M82N/AN/A
12-4/M820.773640.619
1-3/M820.75382
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M821.182670.395
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M820.929891
4-3/M82N/AN/A
5-3/M820.83460.642
6-2/M82N/AN/A
6-3/M821.25459
7-1/M820.89674
7-2/M82N/AN/A
9-3-2/M820.914810.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.214230.441
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.05595
IL12-4/WTpooled1.237120.538
IL1-4/WTpooled1.108381
WT/WTpooled1.048581

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.382560.479

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.162520.921
DC3000/delta hrp 6h0.906510.95
DC3000/delta hrp 12h1.063661
DC3000/delta hrp 24h1.476650.232

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.29850.073
DC3000 delta B/DC3000 delta AB0.944280.511

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36h1.257691
Exp 60h1.128031

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.98371
Var 0h0.927991
Var 12h I row2-row11.002221
Var 12h NI row2-row10.941220.82
Var 36h I row2-row11.035951
Var 36h NI row2-row10.969480.791
Var 60h I row2-row10.879570.285
Var 60h NI row2-row11.033881
Time course 0hI-0hNI1.001041
Time course 12hI-12hNI1.042650.672
Time course 36hI-36hNI1.250110.07
Time course 60hI-60hNI2.908920.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.915140.567
transgenic ySAMdc/azygous control (breaker)0.671170.139
transgenic ySAMdc/azygous control (red)1.084540.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.064850.135

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.597410.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)2.306840.14
Manapal/WT (break)1.68630.183
Manapal/WT (red)1.708750.413