Expression of 1-1-6.2.18.2

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.975860.752
27DAP/17DAP1.043091
39DAP/27DAP1.130280.944
41DAP/39DAP0.810110.328
42DAP/41DAP1.037921
43DAP/42DAP1.133980.949
47DAP/43DAP1.181450.633
52DAP/47DAP0.925940.729
57DAP/52DAP1.056561

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.286170.04
17DAP/reference1.055940.457
27DAP/reference1.159620.264
39DAP/reference1.03370.504
41DAP/reference0.872340.114
42DAP/reference1.012910.688
43DAP/reference0.950440.394
47DAP/reference1.081960.295
52DAP/reference1.257790.033
57DAP/reference1.142020.229

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.394170.055
27DAP/17DAP0.935240.748
39DAP/27DAP1.031270.751
41DAP/39DAP1.066681
42DAP/41DAP1.178370.425
43DAP/42DAP0.788720.028
47DAP/43DAP0.955020.743
52DAP/47DAP0.987120.93
57DAP/52DAP1.112320.462
57DAP/7DAP0.977711

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.648420.028
17DAP/reference1.343050.01
27DAP/reference1.244720.018
39DAP/reference1.416660.008
41DAP/reference1.211480.159
42DAP/reference1.114970.534
43DAP/reference1.202130.063
47DAP/reference1.222560.272
52DAP/reference1.371410.034
57DAP/reference1.406270.035

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.079280.933
17DAP/reference1.333440.022
27DAP/reference1.143720.629
39DAP/reference1.108550.22
41DAP/reference1.246830.024
42DAP/reference1.24350.014
43DAP/reference0.900060.201
47DAP/reference1.032360.795
52DAP/reference1.126120.017
57DAP/reference0.86610.085

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.50990.016
17DAP/reference1.046070.631
27DAP/reference1.194990.043
39DAP/reference1.189280.024
41DAP/reference1.188660.134
42DAP/reference1.212470.063
43DAP/reference1.306750.012
47DAP/reference1.139480.066
52DAP/reference1.550590.11
57DAP/reference1.687380.012

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.958831
26DAP/20DAP1.103880.66
34DAP/26DAP0.868130.399
51DAP/34DAP1.087490.692
52DAP/51DAP0.969781
53DAP/52DAP1.361240.095
55DAP/53DAP0.95090.725
57DAP/55DAP1.201720.666
62DAP/57DAP0.984540.994
68DAP/62DAP1.467670.747
68DAP/14DAP2.588790.153

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.661810.036

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.224380.113
Mature Green Tomato/Ripe Tomato1.089870.69
Immature Eggplant/Mature Eggplant0.923250.254
Ripe Pepper/Ripe Tomato1.628681
Mature Eggplant/Ripe Tomato2.319870.373

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.056221
1-1-2/M821.121761
12-2/M820.993371
12-4/M820.990261
1-3/M821.595840.26
2-1-1/M820.96321
2-1/M821.003721
2-6/M820.997021
3-2/M821.12046
4-1-1/M821.087541
4-1/M820.960271
4-3-2/M821.159590.508
4-3/M821.348051
5-3/M821.141990.572
6-2/M821.143521
6-3/M821.082571
7-1/M821.03421
7-2/M821.048981
9-3-2/M821.243581

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.355390.277
IL2-6/WTpooled0.733560.473
IL7-5/WTpooled1.121380.792
IL7-3/WTpooled1.168930.362
IL12-4/WTpooled1.200020.624
IL1-4/WTpooled0.905130.562
WT/WTpooled1.005151

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.932940.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.002971
DC3000/delta hrp 6h1.17281
DC3000/delta hrp 12h0.841611
DC3000/delta hrp 24h0.810020.06

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.00721
DC3000 delta B/DC3000 delta AB1.005450.771

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.141851
Exp 36h1.039611
Exp 60h1.083641

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.027831
Var 0h1.129640.98
Var 12h I row2-row10.964970.856
Var 12h NI row2-row10.957280.906
Var 36h I row2-row11.127870.742
Var 36h NI row2-row11.231460.482
Var 60h I row2-row10.800770.374
Var 60h NI row2-row11.034191
Time course 0hI-0hNI1.008751
Time course 12hI-12hNI1.008090.9
Time course 36hI-36hNI1.020870.651
Time course 60hI-60hNI0.955150.646

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.164790.286
transgenic ySAMdc/azygous control (breaker)0.90660.251
transgenic ySAMdc/azygous control (red)1.005941

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.152680.204

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.910330.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.245850.105
Manapal/WT (break)1.289770.14
Manapal/WT (red)1.43290.15