Expression of 1-1-6.2.18.2
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.97586 | 0.752 |
27DAP/17DAP | 1.04309 | 1 |
39DAP/27DAP | 1.13028 | 0.944 |
41DAP/39DAP | 0.81011 | 0.328 |
42DAP/41DAP | 1.03792 | 1 |
43DAP/42DAP | 1.13398 | 0.949 |
47DAP/43DAP | 1.18145 | 0.633 |
52DAP/47DAP | 0.92594 | 0.729 |
57DAP/52DAP | 1.05656 | 1 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.28617 | 0.04 |
17DAP/reference | 1.05594 | 0.457 |
27DAP/reference | 1.15962 | 0.264 |
39DAP/reference | 1.0337 | 0.504 |
41DAP/reference | 0.87234 | 0.114 |
42DAP/reference | 1.01291 | 0.688 |
43DAP/reference | 0.95044 | 0.394 |
47DAP/reference | 1.08196 | 0.295 |
52DAP/reference | 1.25779 | 0.033 |
57DAP/reference | 1.14202 | 0.229 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.39417 | 0.055 |
27DAP/17DAP | 0.93524 | 0.748 |
39DAP/27DAP | 1.03127 | 0.751 |
41DAP/39DAP | 1.06668 | 1 |
42DAP/41DAP | 1.17837 | 0.425 |
43DAP/42DAP | 0.78872 | 0.028 |
47DAP/43DAP | 0.95502 | 0.743 |
52DAP/47DAP | 0.98712 | 0.93 |
57DAP/52DAP | 1.11232 | 0.462 |
57DAP/7DAP | 0.97771 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.64842 | 0.028 |
17DAP/reference | 1.34305 | 0.01 |
27DAP/reference | 1.24472 | 0.018 |
39DAP/reference | 1.41666 | 0.008 |
41DAP/reference | 1.21148 | 0.159 |
42DAP/reference | 1.11497 | 0.534 |
43DAP/reference | 1.20213 | 0.063 |
47DAP/reference | 1.22256 | 0.272 |
52DAP/reference | 1.37141 | 0.034 |
57DAP/reference | 1.40627 | 0.035 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.07928 | 0.933 |
17DAP/reference | 1.33344 | 0.022 |
27DAP/reference | 1.14372 | 0.629 |
39DAP/reference | 1.10855 | 0.22 |
41DAP/reference | 1.24683 | 0.024 |
42DAP/reference | 1.2435 | 0.014 |
43DAP/reference | 0.90006 | 0.201 |
47DAP/reference | 1.03236 | 0.795 |
52DAP/reference | 1.12612 | 0.017 |
57DAP/reference | 0.8661 | 0.085 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.5099 | 0.016 |
17DAP/reference | 1.04607 | 0.631 |
27DAP/reference | 1.19499 | 0.043 |
39DAP/reference | 1.18928 | 0.024 |
41DAP/reference | 1.18866 | 0.134 |
42DAP/reference | 1.21247 | 0.063 |
43DAP/reference | 1.30675 | 0.012 |
47DAP/reference | 1.13948 | 0.066 |
52DAP/reference | 1.55059 | 0.11 |
57DAP/reference | 1.68738 | 0.012 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.95883 | 1 |
26DAP/20DAP | 1.10388 | 0.66 |
34DAP/26DAP | 0.86813 | 0.399 |
51DAP/34DAP | 1.08749 | 0.692 |
52DAP/51DAP | 0.96978 | 1 |
53DAP/52DAP | 1.36124 | 0.095 |
55DAP/53DAP | 0.9509 | 0.725 |
57DAP/55DAP | 1.20172 | 0.666 |
62DAP/57DAP | 0.98454 | 0.994 |
68DAP/62DAP | 1.46767 | 0.747 |
68DAP/14DAP | 2.58879 | 0.153 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.66181 | 0.036 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.22438 | 0.113 |
Mature Green Tomato/Ripe Tomato | 1.08987 | 0.69 |
Immature Eggplant/Mature Eggplant | 0.92325 | 0.254 |
Ripe Pepper/Ripe Tomato | 1.62868 | 1 |
Mature Eggplant/Ripe Tomato | 2.31987 | 0.373 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.05622 | 1 |
1-1-2/M82 | 1.12176 | 1 |
12-2/M82 | 0.99337 | 1 |
12-4/M82 | 0.99026 | 1 |
1-3/M82 | 1.59584 | 0.26 |
2-1-1/M82 | 0.9632 | 1 |
2-1/M82 | 1.00372 | 1 |
2-6/M82 | 0.99702 | 1 |
3-2/M82 | 1.12046 | |
4-1-1/M82 | 1.08754 | 1 |
4-1/M82 | 0.96027 | 1 |
4-3-2/M82 | 1.15959 | 0.508 |
4-3/M82 | 1.34805 | 1 |
5-3/M82 | 1.14199 | 0.572 |
6-2/M82 | 1.14352 | 1 |
6-3/M82 | 1.08257 | 1 |
7-1/M82 | 1.0342 | 1 |
7-2/M82 | 1.04898 | 1 |
9-3-2/M82 | 1.24358 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.35539 | 0.277 |
IL2-6/WTpooled | 0.73356 | 0.473 |
IL7-5/WTpooled | 1.12138 | 0.792 |
IL7-3/WTpooled | 1.16893 | 0.362 |
IL12-4/WTpooled | 1.20002 | 0.624 |
IL1-4/WTpooled | 0.90513 | 0.562 |
WT/WTpooled | 1.00515 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.93294 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.00297 | 1 |
DC3000/delta hrp 6h | 1.1728 | 1 |
DC3000/delta hrp 12h | 0.84161 | 1 |
DC3000/delta hrp 24h | 0.81002 | 0.06 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.0072 | 1 |
DC3000 delta B/DC3000 delta AB | 1.00545 | 0.771 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.14185 | 1 |
Exp 36h | 1.03961 | 1 |
Exp 60h | 1.08364 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.02783 | 1 |
Var 0h | 1.12964 | 0.98 |
Var 12h I row2-row1 | 0.96497 | 0.856 |
Var 12h NI row2-row1 | 0.95728 | 0.906 |
Var 36h I row2-row1 | 1.12787 | 0.742 |
Var 36h NI row2-row1 | 1.23146 | 0.482 |
Var 60h I row2-row1 | 0.80077 | 0.374 |
Var 60h NI row2-row1 | 1.03419 | 1 |
Time course 0hI-0hNI | 1.00875 | 1 |
Time course 12hI-12hNI | 1.00809 | 0.9 |
Time course 36hI-36hNI | 1.02087 | 0.651 |
Time course 60hI-60hNI | 0.95515 | 0.646 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.16479 | 0.286 |
transgenic ySAMdc/azygous control (breaker) | 0.9066 | 0.251 |
transgenic ySAMdc/azygous control (red) | 1.00594 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.15268 | 0.204 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.91033 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.24585 | 0.105 |
Manapal/WT (break) | 1.28977 | 0.14 |
Manapal/WT (red) | 1.4329 | 0.15 |
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