Expression of 1-1-6.2.18.3
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.15183 | 0.838 |
27DAP/17DAP | 1.0008 | 1 |
39DAP/27DAP | 1.16146 | 0.643 |
41DAP/39DAP | 0.83997 | 0.449 |
42DAP/41DAP | 0.87313 | 1 |
43DAP/42DAP | 1.06887 | 1 |
47DAP/43DAP | 0.91366 | 0.699 |
52DAP/47DAP | 1.0234 | 0.999 |
57DAP/52DAP | 1.2003 | 0.952 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.85547 | 0.041 |
17DAP/reference | 0.95818 | 0.536 |
27DAP/reference | 1.04935 | 0.446 |
39DAP/reference | 1.03818 | 0.679 |
41DAP/reference | 0.97542 | 0.667 |
42DAP/reference | 0.9657 | 0.25 |
43DAP/reference | 0.97975 | 0.675 |
47DAP/reference | 1.08662 | 0.05 |
52DAP/reference | 1.33306 | 0.015 |
57DAP/reference | 1.06226 | 0.291 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.06722 | 0.278 |
27DAP/17DAP | 0.98555 | 0.919 |
39DAP/27DAP | 0.98637 | 0.859 |
41DAP/39DAP | 0.98187 | 0.997 |
42DAP/41DAP | 0.9719 | 0.753 |
43DAP/42DAP | 1.02833 | 0.746 |
47DAP/43DAP | 0.93456 | 0.774 |
52DAP/47DAP | 0.96955 | 0.9 |
57DAP/52DAP | 1.07847 | 0.838 |
57DAP/7DAP | 1.27264 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.93136 | 0.326 |
17DAP/reference | 1.09741 | 0.688 |
27DAP/reference | 1.08198 | 0.974 |
39DAP/reference | 1.08915 | 0.601 |
41DAP/reference | 1.05809 | 0.303 |
42DAP/reference | 1.02958 | 1 |
43DAP/reference | 1.08763 | 0.569 |
47DAP/reference | 0.95239 | 0.383 |
52DAP/reference | 0.87977 | 0.017 |
57DAP/reference | 1.39567 | 0.076 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.01083 | 0.907 |
17DAP/reference | 0.89962 | 0.106 |
27DAP/reference | 0.99205 | 0.663 |
39DAP/reference | 1.03453 | 0.806 |
41DAP/reference | 0.95993 | 0.315 |
42DAP/reference | 0.97742 | 0.433 |
43DAP/reference | 0.98521 | 0.646 |
47DAP/reference | 1.06155 | 0.343 |
52DAP/reference | 1.01551 | 1 |
57DAP/reference | 0.90562 | 0.107 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.89053 | 0.071 |
17DAP/reference | 0.94994 | 0.374 |
27DAP/reference | 0.96346 | 0.23 |
39DAP/reference | 1.01268 | 1 |
41DAP/reference | 1.05593 | 0.796 |
42DAP/reference | 0.92892 | 0.361 |
43DAP/reference | 1.06744 | 0.71 |
47DAP/reference | 1.21382 | 0.05 |
52DAP/reference | 1.29928 | 0.357 |
57DAP/reference | 1.38731 | 0.021 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.52287 | 0.163 |
26DAP/20DAP | 1.22977 | 0.518 |
34DAP/26DAP | 0.92089 | 0.811 |
51DAP/34DAP | 1.22355 | 0.795 |
52DAP/51DAP | 0.94493 | 1 |
53DAP/52DAP | 0.82944 | 0.402 |
55DAP/53DAP | 1.14676 | 0.494 |
57DAP/55DAP | 0.8253 | 0.587 |
62DAP/57DAP | 0.93654 | 0.681 |
68DAP/62DAP | 1.35046 | 0.664 |
68DAP/14DAP | 1.43295 | 0.521 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.99756 | 0.635 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.96362 | 0.745 |
Mature Green Tomato/Ripe Tomato | 0.92575 | |
Immature Eggplant/Mature Eggplant | 1.26954 | 0.136 |
Ripe Pepper/Ripe Tomato | 0.45137 | 0.293 |
Mature Eggplant/Ripe Tomato | 0.41553 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.14849 | 1 |
1-1-2/M82 | 1.08451 | 1 |
12-2/M82 | 0.93671 | 0.955 |
12-4/M82 | 0.83352 | 0.319 |
1-3/M82 | 1.3152 | 0.479 |
2-1-1/M82 | 0.96193 | 1 |
2-1/M82 | 0.78897 | 0.74 |
2-6/M82 | 1.15544 | 0.505 |
3-2/M82 | 0.88931 | |
4-1-1/M82 | 0.97762 | 1 |
4-1/M82 | 0.92861 | |
4-3-2/M82 | 0.95182 | 1 |
4-3/M82 | 1.16437 | 1 |
5-3/M82 | 0.90543 | 1 |
6-2/M82 | 0.87896 | 1 |
6-3/M82 | 1.15808 | 1 |
7-1/M82 | 0.9812 | |
7-2/M82 | 0.91791 | 0.881 |
9-3-2/M82 | 1.05524 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.1589 | 0.493 |
IL2-6/WTpooled | 1.12449 | 1 |
IL7-5/WTpooled | 0.86185 | 1 |
IL7-3/WTpooled | 1.20209 | 1 |
IL12-4/WTpooled | 0.98506 | 1 |
IL1-4/WTpooled | 1.06612 | 1 |
WT/WTpooled | 0.82188 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.9897 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.03967 | 0.921 |
DC3000/delta hrp 6h | 1.06306 | 1 |
DC3000/delta hrp 12h | 1.02263 | 1 |
DC3000/delta hrp 24h | 0.85945 | 0.212 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.56971 | |
DC3000 delta B/DC3000 delta AB | 1.08171 | 1 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | 1.04119 | 1 |
Exp 60h | 1.33602 | 0.399 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.9768 | |
Var 0h | 1.1049 | 1 |
Var 12h I row2-row1 | 0.89231 | 0.467 |
Var 12h NI row2-row1 | 0.88865 | 0.713 |
Var 36h I row2-row1 | 0.93856 | 0.805 |
Var 36h NI row2-row1 | 1.22603 | 0.482 |
Var 60h I row2-row1 | 8.36118 | 1 |
Var 60h NI row2-row1 | 0.99917 | 1 |
Time course 0hI-0hNI | 0.97847 | 0.908 |
Time course 12hI-12hNI | 0.99282 | 1 |
Time course 36hI-36hNI | 0.89987 | 0.03 |
Time course 60hI-60hNI | 0.51453 | 0.005 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.06584 | 0.431 |
transgenic ySAMdc/azygous control (breaker) | 0.76185 | 0.173 |
transgenic ySAMdc/azygous control (red) | 0.95112 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.07614 | 0.115 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.72821 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.77586 | 1 |
Manapal/WT (break) | 1.23466 | 0.14 |
Manapal/WT (red) | 1.40507 | 0.142 |
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