Expression of 1-1-6.2.18.3

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.151830.838
27DAP/17DAP1.00081
39DAP/27DAP1.161460.643
41DAP/39DAP0.839970.449
42DAP/41DAP0.873131
43DAP/42DAP1.068871
47DAP/43DAP0.913660.699
52DAP/47DAP1.02340.999
57DAP/52DAP1.20030.952

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.855470.041
17DAP/reference0.958180.536
27DAP/reference1.049350.446
39DAP/reference1.038180.679
41DAP/reference0.975420.667
42DAP/reference0.96570.25
43DAP/reference0.979750.675
47DAP/reference1.086620.05
52DAP/reference1.333060.015
57DAP/reference1.062260.291

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.067220.278
27DAP/17DAP0.985550.919
39DAP/27DAP0.986370.859
41DAP/39DAP0.981870.997
42DAP/41DAP0.97190.753
43DAP/42DAP1.028330.746
47DAP/43DAP0.934560.774
52DAP/47DAP0.969550.9
57DAP/52DAP1.078470.838
57DAP/7DAP1.272641

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.931360.326
17DAP/reference1.097410.688
27DAP/reference1.081980.974
39DAP/reference1.089150.601
41DAP/reference1.058090.303
42DAP/reference1.029581
43DAP/reference1.087630.569
47DAP/reference0.952390.383
52DAP/reference0.879770.017
57DAP/reference1.395670.076

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.010830.907
17DAP/reference0.899620.106
27DAP/reference0.992050.663
39DAP/reference1.034530.806
41DAP/reference0.959930.315
42DAP/reference0.977420.433
43DAP/reference0.985210.646
47DAP/reference1.061550.343
52DAP/reference1.015511
57DAP/reference0.905620.107

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.890530.071
17DAP/reference0.949940.374
27DAP/reference0.963460.23
39DAP/reference1.012681
41DAP/reference1.055930.796
42DAP/reference0.928920.361
43DAP/reference1.067440.71
47DAP/reference1.213820.05
52DAP/reference1.299280.357
57DAP/reference1.387310.021

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.522870.163
26DAP/20DAP1.229770.518
34DAP/26DAP0.920890.811
51DAP/34DAP1.223550.795
52DAP/51DAP0.944931
53DAP/52DAP0.829440.402
55DAP/53DAP1.146760.494
57DAP/55DAP0.82530.587
62DAP/57DAP0.936540.681
68DAP/62DAP1.350460.664
68DAP/14DAP1.432950.521

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.997560.635

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.963620.745
Mature Green Tomato/Ripe Tomato0.92575
Immature Eggplant/Mature Eggplant1.269540.136
Ripe Pepper/Ripe Tomato0.451370.293
Mature Eggplant/Ripe Tomato0.415530.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.148491
1-1-2/M821.084511
12-2/M820.936710.955
12-4/M820.833520.319
1-3/M821.31520.479
2-1-1/M820.961931
2-1/M820.788970.74
2-6/M821.155440.505
3-2/M820.88931
4-1-1/M820.977621
4-1/M820.92861
4-3-2/M820.951821
4-3/M821.164371
5-3/M820.905431
6-2/M820.878961
6-3/M821.158081
7-1/M820.9812
7-2/M820.917910.881
9-3-2/M821.05524

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.15890.493
IL2-6/WTpooled1.124491
IL7-5/WTpooled0.861851
IL7-3/WTpooled1.202091
IL12-4/WTpooled0.985061
IL1-4/WTpooled1.066121
WT/WTpooled0.821881

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.98971

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.039670.921
DC3000/delta hrp 6h1.063061
DC3000/delta hrp 12h1.022631
DC3000/delta hrp 24h0.859450.212

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.56971
DC3000 delta B/DC3000 delta AB1.081711

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36h1.041191
Exp 60h1.336020.399

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.9768
Var 0h1.10491
Var 12h I row2-row10.892310.467
Var 12h NI row2-row10.888650.713
Var 36h I row2-row10.938560.805
Var 36h NI row2-row11.226030.482
Var 60h I row2-row18.361181
Var 60h NI row2-row10.999171
Time course 0hI-0hNI0.978470.908
Time course 12hI-12hNI0.992821
Time course 36hI-36hNI0.899870.03
Time course 60hI-60hNI0.514530.005

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.065840.431
transgenic ySAMdc/azygous control (breaker)0.761850.173
transgenic ySAMdc/azygous control (red)0.951121

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.076140.115

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.728210.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.775861
Manapal/WT (break)1.234660.14
Manapal/WT (red)1.405070.142