Expression of 1-1-6.2.19.13

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.407440.365
27DAP/17DAP0.929840.843
39DAP/27DAP1.676820.159
41DAP/39DAP0.56720.047
42DAP/41DAP1.082971
43DAP/42DAP1.13261
47DAP/43DAP0.674470.177
52DAP/47DAP0.983910.848
57DAP/52DAP1.299810.849

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.215990.35
17DAP/reference1.240830.064
27DAP/reference1.510050.009
39DAP/reference1.071010.445
41DAP/reference1.146130.451
42DAP/reference1.392240.023
43DAP/reference1.204690.102
47DAP/reference1.603860.005
52DAP/reference1.8760.009
57DAP/reference1.764430.011

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.272510.062
27DAP/17DAP1.074130.751
39DAP/27DAP0.780120.054
41DAP/39DAP1.262230.79
42DAP/41DAP1.016550.924
43DAP/42DAP0.75250.034
47DAP/43DAP0.998740.998
52DAP/47DAP0.97950.907
57DAP/52DAP1.106390.674
57DAP/7DAP0.622740.219

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.338070.047
17DAP/reference1.033280.971
27DAP/reference1.11180.301
39DAP/reference1.169310.297
41DAP/reference1.391110.039
42DAP/reference1.091691
43DAP/reference1.043280.788
47DAP/reference1.139320.732
52DAP/reference0.979750.435
57DAP/reference1.274020.214

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.875150.426
17DAP/reference1.211270.294
27DAP/reference1.113950.562
39DAP/reference1.16920.463
41DAP/reference1.517890.027
42DAP/reference1.057580.899
43DAP/reference0.897760.314
47DAP/reference1.156230.212
52DAP/reference1.198770.444
57DAP/reference1.377970.538

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.013831
17DAP/reference1.094410.638
27DAP/reference1.197850.552
39DAP/reference1.256690.12
41DAP/reference1.198380.257
42DAP/reference0.951790.552
43DAP/reference1.361340.275
47DAP/reference1.682030.021
52DAP/reference1.253170.542
57DAP/reference1.67970.104

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.111811
26DAP/20DAP1.404130.122
34DAP/26DAP1.022091
51DAP/34DAP0.968310.703
52DAP/51DAP0.911011
53DAP/52DAP0.878750.102
55DAP/53DAP0.755890.042
57DAP/55DAP1.065130.969
62DAP/57DAP1.019540.994
68DAP/62DAP1.026350.939
68DAP/14DAP1.82801

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.808070.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato2.151310.044
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.13158
Mature Eggplant/Ripe Tomato0.373510.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.598770.616
1-1-2/M821.159661
12-2/M820.788530.74
12-4/M821.298991
1-3/M820.633840.378
2-1-1/M820.7791
2-1/M820.555730.322
2-6/M820.773851
3-2/M821.43279
4-1-1/M821.413140.938
4-1/M821.756261
4-3-2/M821.564690.508
4-3/M821.148811
5-3/M820.92191
6-2/M820.45685
6-3/M821.045171
7-1/M821.035861
7-2/M821.59139
9-3-2/M821.455240.196

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.243310.277
IL2-6/WTpooled1.026571
IL7-5/WTpooled1.229540.792
IL7-3/WTpooled1.131380.362
IL12-4/WTpooled1.084370.839
IL1-4/WTpooled1.107921
WT/WTpooled0.897141

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.193650.193

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.042460.921
DC3000/delta hrp 6h1.26909
DC3000/delta hrp 12h0.599181
DC3000/delta hrp 24h0.867550.109

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.100340.27
DC3000 delta B/DC3000 delta AB1.13510.296

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.014661
Var 0h0.719160.457
Var 12h I row2-row10.935980.856
Var 12h NI row2-row11.13061
Var 36h I row2-row10.979411
Var 36h NI row2-row10.979230.791
Var 60h I row2-row10.83890.582
Var 60h NI row2-row10.819420.359
Time course 0hI-0hNI0.903470.411
Time course 12hI-12hNI1.034640.668
Time course 36hI-36hNI1.265860.08
Time course 60hI-60hNI1.451040.009

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.204860.931
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)1.005881

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.605210.194

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.111821

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.724381
Manapal/WT (break)N/AN/A
Manapal/WT (red)1.457120.164