Expression of 1-1-6.2.19.13
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.40744 | 0.365 |
27DAP/17DAP | 0.92984 | 0.843 |
39DAP/27DAP | 1.67682 | 0.159 |
41DAP/39DAP | 0.5672 | 0.047 |
42DAP/41DAP | 1.08297 | 1 |
43DAP/42DAP | 1.1326 | 1 |
47DAP/43DAP | 0.67447 | 0.177 |
52DAP/47DAP | 0.98391 | 0.848 |
57DAP/52DAP | 1.29981 | 0.849 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.21599 | 0.35 |
17DAP/reference | 1.24083 | 0.064 |
27DAP/reference | 1.51005 | 0.009 |
39DAP/reference | 1.07101 | 0.445 |
41DAP/reference | 1.14613 | 0.451 |
42DAP/reference | 1.39224 | 0.023 |
43DAP/reference | 1.20469 | 0.102 |
47DAP/reference | 1.60386 | 0.005 |
52DAP/reference | 1.876 | 0.009 |
57DAP/reference | 1.76443 | 0.011 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.27251 | 0.062 |
27DAP/17DAP | 1.07413 | 0.751 |
39DAP/27DAP | 0.78012 | 0.054 |
41DAP/39DAP | 1.26223 | 0.79 |
42DAP/41DAP | 1.01655 | 0.924 |
43DAP/42DAP | 0.7525 | 0.034 |
47DAP/43DAP | 0.99874 | 0.998 |
52DAP/47DAP | 0.9795 | 0.907 |
57DAP/52DAP | 1.10639 | 0.674 |
57DAP/7DAP | 0.62274 | 0.219 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.33807 | 0.047 |
17DAP/reference | 1.03328 | 0.971 |
27DAP/reference | 1.1118 | 0.301 |
39DAP/reference | 1.16931 | 0.297 |
41DAP/reference | 1.39111 | 0.039 |
42DAP/reference | 1.09169 | 1 |
43DAP/reference | 1.04328 | 0.788 |
47DAP/reference | 1.13932 | 0.732 |
52DAP/reference | 0.97975 | 0.435 |
57DAP/reference | 1.27402 | 0.214 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.87515 | 0.426 |
17DAP/reference | 1.21127 | 0.294 |
27DAP/reference | 1.11395 | 0.562 |
39DAP/reference | 1.1692 | 0.463 |
41DAP/reference | 1.51789 | 0.027 |
42DAP/reference | 1.05758 | 0.899 |
43DAP/reference | 0.89776 | 0.314 |
47DAP/reference | 1.15623 | 0.212 |
52DAP/reference | 1.19877 | 0.444 |
57DAP/reference | 1.37797 | 0.538 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.01383 | 1 |
17DAP/reference | 1.09441 | 0.638 |
27DAP/reference | 1.19785 | 0.552 |
39DAP/reference | 1.25669 | 0.12 |
41DAP/reference | 1.19838 | 0.257 |
42DAP/reference | 0.95179 | 0.552 |
43DAP/reference | 1.36134 | 0.275 |
47DAP/reference | 1.68203 | 0.021 |
52DAP/reference | 1.25317 | 0.542 |
57DAP/reference | 1.6797 | 0.104 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.11181 | 1 |
26DAP/20DAP | 1.40413 | 0.122 |
34DAP/26DAP | 1.02209 | 1 |
51DAP/34DAP | 0.96831 | 0.703 |
52DAP/51DAP | 0.91101 | 1 |
53DAP/52DAP | 0.87875 | 0.102 |
55DAP/53DAP | 0.75589 | 0.042 |
57DAP/55DAP | 1.06513 | 0.969 |
62DAP/57DAP | 1.01954 | 0.994 |
68DAP/62DAP | 1.02635 | 0.939 |
68DAP/14DAP | 1.82801 | |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.80807 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 2.15131 | 0.044 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.13158 | |
Mature Eggplant/Ripe Tomato | 0.37351 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.59877 | 0.616 |
1-1-2/M82 | 1.15966 | 1 |
12-2/M82 | 0.78853 | 0.74 |
12-4/M82 | 1.29899 | 1 |
1-3/M82 | 0.63384 | 0.378 |
2-1-1/M82 | 0.7791 | |
2-1/M82 | 0.55573 | 0.322 |
2-6/M82 | 0.77385 | 1 |
3-2/M82 | 1.43279 | |
4-1-1/M82 | 1.41314 | 0.938 |
4-1/M82 | 1.75626 | 1 |
4-3-2/M82 | 1.56469 | 0.508 |
4-3/M82 | 1.14881 | 1 |
5-3/M82 | 0.92191 | |
6-2/M82 | 0.45685 | |
6-3/M82 | 1.04517 | 1 |
7-1/M82 | 1.03586 | 1 |
7-2/M82 | 1.59139 | |
9-3-2/M82 | 1.45524 | 0.196 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.24331 | 0.277 |
IL2-6/WTpooled | 1.02657 | 1 |
IL7-5/WTpooled | 1.22954 | 0.792 |
IL7-3/WTpooled | 1.13138 | 0.362 |
IL12-4/WTpooled | 1.08437 | 0.839 |
IL1-4/WTpooled | 1.10792 | 1 |
WT/WTpooled | 0.89714 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.19365 | 0.193 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.04246 | 0.921 |
DC3000/delta hrp 6h | 1.26909 | |
DC3000/delta hrp 12h | 0.59918 | 1 |
DC3000/delta hrp 24h | 0.86755 | 0.109 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.10034 | 0.27 |
DC3000 delta B/DC3000 delta AB | 1.1351 | 0.296 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.01466 | 1 |
Var 0h | 0.71916 | 0.457 |
Var 12h I row2-row1 | 0.93598 | 0.856 |
Var 12h NI row2-row1 | 1.1306 | 1 |
Var 36h I row2-row1 | 0.97941 | 1 |
Var 36h NI row2-row1 | 0.97923 | 0.791 |
Var 60h I row2-row1 | 0.8389 | 0.582 |
Var 60h NI row2-row1 | 0.81942 | 0.359 |
Time course 0hI-0hNI | 0.90347 | 0.411 |
Time course 12hI-12hNI | 1.03464 | 0.668 |
Time course 36hI-36hNI | 1.26586 | 0.08 |
Time course 60hI-60hNI | 1.45104 | 0.009 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.20486 | 0.931 |
transgenic ySAMdc/azygous control (breaker) | N/A | N/A |
transgenic ySAMdc/azygous control (red) | 1.00588 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.60521 | 0.194 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.11182 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.72438 | 1 |
Manapal/WT (break) | N/A | N/A |
Manapal/WT (red) | 1.45712 | 0.164 |
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