Expression of 1-1-6.2.19.16

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.27420.545
27DAP/17DAP1.749630.521
39DAP/27DAP1.772450.262
41DAP/39DAP1.209630.914
42DAP/41DAP1.096530.941
43DAP/42DAP1.135620.937
47DAP/43DAP1.208440.201
52DAP/47DAP1.046370.982
57DAP/52DAP1.016020.971

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.91430.317
17DAP/reference0.809740.02
27DAP/reference0.785580.022
39DAP/reference0.819690.097
41DAP/reference0.626450.026
42DAP/reference0.924870.196
43DAP/reference0.866560.047
47DAP/reference0.918440.077
52DAP/reference1.004030.768
57DAP/reference0.953620.358

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.961150.716
27DAP/17DAP1.008860.988
39DAP/27DAP1.077710.707
41DAP/39DAP1.175310.531
42DAP/41DAP0.98790.864
43DAP/42DAP1.068981
47DAP/43DAP1.579670.681
52DAP/47DAP1.133260.927
57DAP/52DAP1.210620.674
57DAP/7DAP2.30996

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.889960.203
17DAP/reference0.890980.049
27DAP/reference0.811650.017
39DAP/reference0.992880.745
41DAP/reference0.928560.247
42DAP/reference0.976540.506
43DAP/reference1.050270.83
47DAP/reference0.854010.168
52DAP/reference0.824810.04
57DAP/reference0.796660.007

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.903890.296
17DAP/reference0.764860.035
27DAP/reference0.787970.06
39DAP/reference1.108970.543
41DAP/reference0.952860.403
42DAP/reference0.98320.534
43DAP/reference0.778250.014
47DAP/reference0.846380.058
52DAP/reference0.825460.22
57DAP/reference1.009420.874

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.969990.526
17DAP/reference0.931130.426
27DAP/reference0.882740.062
39DAP/reference0.800170.029
41DAP/reference0.894490.209
42DAP/reference0.872650.134
43DAP/reference0.926880.398
47DAP/reference0.967380.478
52DAP/reference0.856160.284
57DAP/reference1.34970.094

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.036060.966
26DAP/20DAP1.113680.785
34DAP/26DAP1.289581
51DAP/34DAP1.147940.84
52DAP/51DAP1.564310.281
53DAP/52DAP0.706180.049
55DAP/53DAP0.84560.515
57DAP/55DAP0.950950.795
62DAP/57DAP1.130340.868
68DAP/62DAP1.040331
68DAP/14DAP1.733270.265

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.725860.048

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.240310.058
Mature Green Tomato/Ripe Tomato0.771250.522
Immature Eggplant/Mature Eggplant1.194930.056
Ripe Pepper/Ripe Tomato0.623930.293
Mature Eggplant/Ripe Tomato0.888571

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.87327
1-1-2/M820.969761
12-2/M82N/AN/A
12-4/M820.913011
1-3/M821.1607
2-1-1/M821.179870.689
2-1/M82N/AN/A
2-6/M820.983531
3-2/M820.87555
4-1-1/M820.90908
4-1/M820.74037
4-3-2/M82N/AN/A
4-3/M821.118970.268
5-3/M821.056590.572
6-2/M820.75527
6-3/M821.128231
7-1/M821.43197
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.91346
IL7-5/WTpooled0.69284
IL7-3/WTpooled0.90541
IL12-4/WTpooled0.954421
IL1-4/WTpooled0.907770.562
WT/WTpooled1.009861

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.057770.193

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.107550.921
DC3000/delta hrp 6h1.009240.95
DC3000/delta hrp 12h0.82211
DC3000/delta hrp 24h1.036520.76

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB1.54997

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.062251
Exp 36h1.217291
Exp 60h1.357110.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.086451
Var 0h1.081110.311
Var 12h I row2-row11.638750.506
Var 12h NI row2-row12.776061
Var 36h I row2-row10.669411
Var 36h NI row2-row10.791030.743
Var 60h I row2-row10.89109
Var 60h NI row2-row10.575091
Time course 0hI-0hNI1.022150.867
Time course 12hI-12hNI0.96630.87
Time course 36hI-36hNI1.290420.012
Time course 60hI-60hNI1.423050.025

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.981580.362
transgenic ySAMdc/azygous control (breaker)1.045150.248
transgenic ySAMdc/azygous control (red)0.991631

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.966470.133

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.074490.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.121960.307
Manapal/WT (break)1.126660.381
Manapal/WT (red)0.806740.199