Expression of 1-1-6.2.19.16
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.2742 | 0.545 |
27DAP/17DAP | 1.74963 | 0.521 |
39DAP/27DAP | 1.77245 | 0.262 |
41DAP/39DAP | 1.20963 | 0.914 |
42DAP/41DAP | 1.09653 | 0.941 |
43DAP/42DAP | 1.13562 | 0.937 |
47DAP/43DAP | 1.20844 | 0.201 |
52DAP/47DAP | 1.04637 | 0.982 |
57DAP/52DAP | 1.01602 | 0.971 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.9143 | 0.317 |
17DAP/reference | 0.80974 | 0.02 |
27DAP/reference | 0.78558 | 0.022 |
39DAP/reference | 0.81969 | 0.097 |
41DAP/reference | 0.62645 | 0.026 |
42DAP/reference | 0.92487 | 0.196 |
43DAP/reference | 0.86656 | 0.047 |
47DAP/reference | 0.91844 | 0.077 |
52DAP/reference | 1.00403 | 0.768 |
57DAP/reference | 0.95362 | 0.358 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.96115 | 0.716 |
27DAP/17DAP | 1.00886 | 0.988 |
39DAP/27DAP | 1.07771 | 0.707 |
41DAP/39DAP | 1.17531 | 0.531 |
42DAP/41DAP | 0.9879 | 0.864 |
43DAP/42DAP | 1.06898 | 1 |
47DAP/43DAP | 1.57967 | 0.681 |
52DAP/47DAP | 1.13326 | 0.927 |
57DAP/52DAP | 1.21062 | 0.674 |
57DAP/7DAP | 2.30996 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.88996 | 0.203 |
17DAP/reference | 0.89098 | 0.049 |
27DAP/reference | 0.81165 | 0.017 |
39DAP/reference | 0.99288 | 0.745 |
41DAP/reference | 0.92856 | 0.247 |
42DAP/reference | 0.97654 | 0.506 |
43DAP/reference | 1.05027 | 0.83 |
47DAP/reference | 0.85401 | 0.168 |
52DAP/reference | 0.82481 | 0.04 |
57DAP/reference | 0.79666 | 0.007 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.90389 | 0.296 |
17DAP/reference | 0.76486 | 0.035 |
27DAP/reference | 0.78797 | 0.06 |
39DAP/reference | 1.10897 | 0.543 |
41DAP/reference | 0.95286 | 0.403 |
42DAP/reference | 0.9832 | 0.534 |
43DAP/reference | 0.77825 | 0.014 |
47DAP/reference | 0.84638 | 0.058 |
52DAP/reference | 0.82546 | 0.22 |
57DAP/reference | 1.00942 | 0.874 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.96999 | 0.526 |
17DAP/reference | 0.93113 | 0.426 |
27DAP/reference | 0.88274 | 0.062 |
39DAP/reference | 0.80017 | 0.029 |
41DAP/reference | 0.89449 | 0.209 |
42DAP/reference | 0.87265 | 0.134 |
43DAP/reference | 0.92688 | 0.398 |
47DAP/reference | 0.96738 | 0.478 |
52DAP/reference | 0.85616 | 0.284 |
57DAP/reference | 1.3497 | 0.094 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.03606 | 0.966 |
26DAP/20DAP | 1.11368 | 0.785 |
34DAP/26DAP | 1.28958 | 1 |
51DAP/34DAP | 1.14794 | 0.84 |
52DAP/51DAP | 1.56431 | 0.281 |
53DAP/52DAP | 0.70618 | 0.049 |
55DAP/53DAP | 0.8456 | 0.515 |
57DAP/55DAP | 0.95095 | 0.795 |
62DAP/57DAP | 1.13034 | 0.868 |
68DAP/62DAP | 1.04033 | 1 |
68DAP/14DAP | 1.73327 | 0.265 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.72586 | 0.048 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.24031 | 0.058 |
Mature Green Tomato/Ripe Tomato | 0.77125 | 0.522 |
Immature Eggplant/Mature Eggplant | 1.19493 | 0.056 |
Ripe Pepper/Ripe Tomato | 0.62393 | 0.293 |
Mature Eggplant/Ripe Tomato | 0.88857 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.87327 | |
1-1-2/M82 | 0.96976 | 1 |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.91301 | 1 |
1-3/M82 | 1.1607 | |
2-1-1/M82 | 1.17987 | 0.689 |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.98353 | 1 |
3-2/M82 | 0.87555 | |
4-1-1/M82 | 0.90908 | |
4-1/M82 | 0.74037 | |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 1.11897 | 0.268 |
5-3/M82 | 1.05659 | 0.572 |
6-2/M82 | 0.75527 | |
6-3/M82 | 1.12823 | 1 |
7-1/M82 | 1.43197 | |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.91346 | |
IL7-5/WTpooled | 0.69284 | |
IL7-3/WTpooled | 0.90541 | |
IL12-4/WTpooled | 0.95442 | 1 |
IL1-4/WTpooled | 0.90777 | 0.562 |
WT/WTpooled | 1.00986 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.05777 | 0.193 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.10755 | 0.921 |
DC3000/delta hrp 6h | 1.00924 | 0.95 |
DC3000/delta hrp 12h | 0.8221 | 1 |
DC3000/delta hrp 24h | 1.03652 | 0.76 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 1.54997 | |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.06225 | 1 |
Exp 36h | 1.21729 | 1 |
Exp 60h | 1.35711 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.08645 | 1 |
Var 0h | 1.08111 | 0.311 |
Var 12h I row2-row1 | 1.63875 | 0.506 |
Var 12h NI row2-row1 | 2.77606 | 1 |
Var 36h I row2-row1 | 0.66941 | 1 |
Var 36h NI row2-row1 | 0.79103 | 0.743 |
Var 60h I row2-row1 | 0.89109 | |
Var 60h NI row2-row1 | 0.57509 | 1 |
Time course 0hI-0hNI | 1.02215 | 0.867 |
Time course 12hI-12hNI | 0.9663 | 0.87 |
Time course 36hI-36hNI | 1.29042 | 0.012 |
Time course 60hI-60hNI | 1.42305 | 0.025 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.98158 | 0.362 |
transgenic ySAMdc/azygous control (breaker) | 1.04515 | 0.248 |
transgenic ySAMdc/azygous control (red) | 0.99163 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.96647 | 0.133 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.07449 | 0.277 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.12196 | 0.307 |
Manapal/WT (break) | 1.12666 | 0.381 |
Manapal/WT (red) | 0.80674 | 0.199 |
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