Expression of 1-1-6.2.2.12

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.506640.015
27DAP/17DAP1.002480.984
39DAP/27DAP1.398260.287
41DAP/39DAP0.92190.632
42DAP/41DAP0.98581
43DAP/42DAP1.122981
47DAP/43DAP1.377910.448
52DAP/47DAP0.864460.627
57DAP/52DAP1.25510.735

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.063630.5
17DAP/reference0.90530.079
27DAP/reference0.862880.098
39DAP/reference0.81840.046
41DAP/reference0.851670.009
42DAP/reference0.949670.163
43DAP/reference0.987710.785
47DAP/reference1.071910.264
52DAP/reference1.073270.8
57DAP/reference1.143450.016

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.766470.08
27DAP/17DAP0.877750.648
39DAP/27DAP1.082180.526
41DAP/39DAP1.069960.861
42DAP/41DAP1.279690.74
43DAP/42DAP0.975170.875
47DAP/43DAP1.336040.765
52DAP/47DAP0.833110.321
57DAP/52DAP0.916270.445
57DAP/7DAP1.266361

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.389190.069
17DAP/reference1.301870.077
27DAP/reference1.23030.049
39DAP/reference1.41740.042
41DAP/reference1.483180.014
42DAP/reference1.540880.006
43DAP/reference1.489180.009
47DAP/reference1.127440.537
52DAP/reference1.571550.01
57DAP/reference1.601340.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.069570.545
17DAP/reference0.954310.357
27DAP/reference0.934650.304
39DAP/reference0.919570.189
41DAP/reference0.918910.231
42DAP/reference0.87890.108
43DAP/reference0.833360.084
47DAP/reference0.853280.085
52DAP/reference0.890950.021
57DAP/reference0.948320.384

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.357730.024
17DAP/reference1.003410.87
27DAP/reference1.164280.045
39DAP/reference1.252650.027
41DAP/reference1.137810.08
42DAP/reference1.421660.023
43DAP/reference1.423160.023
47DAP/reference1.007550.646
52DAP/reference1.267650.167
57DAP/reference1.66020.027

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.179310.966
26DAP/20DAP0.941511
34DAP/26DAP1.041391
51DAP/34DAPN/AN/A
52DAP/51DAP0.88361
53DAP/52DAP0.971140.917
55DAP/53DAP0.949350.746
57DAP/55DAP0.810370.213
62DAP/57DAP1.398340.35
68DAP/62DAP1.283260.091
68DAP/14DAP1.841540.311

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.766350.016

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.26180.058
Mature Green Tomato/Ripe Tomato0.556270.023
Immature Eggplant/Mature Eggplant1.149980.136
Ripe Pepper/Ripe Tomato0.931
Mature Eggplant/Ripe Tomato1.154750.373

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.907530.944
1-1-2/M821.330911
12-2/M82N/AN/A
12-4/M821.119181
1-3/M822.42540.255
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M821.007221
3-2/M821.17714
4-1-1/M821.019621
4-1/M820.63819
4-3-2/M821.312660.262
4-3/M821.042161
5-3/M821.088981
6-2/M82N/AN/A
6-3/M821.050911
7-1/M820.964761
7-2/M821.00352
9-3-2/M821.17093

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.83325
IL2-6/WTpooled1.014041
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.252630.362
IL12-4/WTpooled1.312420.624
IL1-4/WTpooled1.05225
WT/WTpooled0.995931

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.798680.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.99281
DC3000/delta hrp 6h1.102931
DC3000/delta hrp 12h1.137661
DC3000/delta hrp 24h0.49570.087

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.002661
Exp 36h0.719570.426
Exp 60h0.672750.251

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.999721
Var 0h1.025241
Var 12h I row2-row10.818850.77
Var 12h NI row2-row11.080651
Var 36h I row2-row10.776041
Var 36h NI row2-row10.44753
Var 60h I row2-row11.05059
Var 60h NI row2-row11.095511
Time course 0hI-0hNI0.82360.047
Time course 12hI-12hNI1.034520.668
Time course 36hI-36hNI0.878340.23
Time course 60hI-60hNI0.880160.081

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.83530.272
transgenic ySAMdc/azygous control (breaker)1.170510.248
transgenic ySAMdc/azygous control (red)0.903551

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.040670.261

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.53490.239

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.324830.083
Manapal/WT (break)1.034331
Manapal/WT (red)1.010791