Expression of 1-1-6.2.2.12
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.50664 | 0.015 |
27DAP/17DAP | 1.00248 | 0.984 |
39DAP/27DAP | 1.39826 | 0.287 |
41DAP/39DAP | 0.9219 | 0.632 |
42DAP/41DAP | 0.9858 | 1 |
43DAP/42DAP | 1.12298 | 1 |
47DAP/43DAP | 1.37791 | 0.448 |
52DAP/47DAP | 0.86446 | 0.627 |
57DAP/52DAP | 1.2551 | 0.735 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.06363 | 0.5 |
17DAP/reference | 0.9053 | 0.079 |
27DAP/reference | 0.86288 | 0.098 |
39DAP/reference | 0.8184 | 0.046 |
41DAP/reference | 0.85167 | 0.009 |
42DAP/reference | 0.94967 | 0.163 |
43DAP/reference | 0.98771 | 0.785 |
47DAP/reference | 1.07191 | 0.264 |
52DAP/reference | 1.07327 | 0.8 |
57DAP/reference | 1.14345 | 0.016 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.76647 | 0.08 |
27DAP/17DAP | 0.87775 | 0.648 |
39DAP/27DAP | 1.08218 | 0.526 |
41DAP/39DAP | 1.06996 | 0.861 |
42DAP/41DAP | 1.27969 | 0.74 |
43DAP/42DAP | 0.97517 | 0.875 |
47DAP/43DAP | 1.33604 | 0.765 |
52DAP/47DAP | 0.83311 | 0.321 |
57DAP/52DAP | 0.91627 | 0.445 |
57DAP/7DAP | 1.26636 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.38919 | 0.069 |
17DAP/reference | 1.30187 | 0.077 |
27DAP/reference | 1.2303 | 0.049 |
39DAP/reference | 1.4174 | 0.042 |
41DAP/reference | 1.48318 | 0.014 |
42DAP/reference | 1.54088 | 0.006 |
43DAP/reference | 1.48918 | 0.009 |
47DAP/reference | 1.12744 | 0.537 |
52DAP/reference | 1.57155 | 0.01 |
57DAP/reference | 1.60134 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.06957 | 0.545 |
17DAP/reference | 0.95431 | 0.357 |
27DAP/reference | 0.93465 | 0.304 |
39DAP/reference | 0.91957 | 0.189 |
41DAP/reference | 0.91891 | 0.231 |
42DAP/reference | 0.8789 | 0.108 |
43DAP/reference | 0.83336 | 0.084 |
47DAP/reference | 0.85328 | 0.085 |
52DAP/reference | 0.89095 | 0.021 |
57DAP/reference | 0.94832 | 0.384 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.35773 | 0.024 |
17DAP/reference | 1.00341 | 0.87 |
27DAP/reference | 1.16428 | 0.045 |
39DAP/reference | 1.25265 | 0.027 |
41DAP/reference | 1.13781 | 0.08 |
42DAP/reference | 1.42166 | 0.023 |
43DAP/reference | 1.42316 | 0.023 |
47DAP/reference | 1.00755 | 0.646 |
52DAP/reference | 1.26765 | 0.167 |
57DAP/reference | 1.6602 | 0.027 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.17931 | 0.966 |
26DAP/20DAP | 0.94151 | 1 |
34DAP/26DAP | 1.04139 | 1 |
51DAP/34DAP | N/A | N/A |
52DAP/51DAP | 0.8836 | 1 |
53DAP/52DAP | 0.97114 | 0.917 |
55DAP/53DAP | 0.94935 | 0.746 |
57DAP/55DAP | 0.81037 | 0.213 |
62DAP/57DAP | 1.39834 | 0.35 |
68DAP/62DAP | 1.28326 | 0.091 |
68DAP/14DAP | 1.84154 | 0.311 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.76635 | 0.016 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.2618 | 0.058 |
Mature Green Tomato/Ripe Tomato | 0.55627 | 0.023 |
Immature Eggplant/Mature Eggplant | 1.14998 | 0.136 |
Ripe Pepper/Ripe Tomato | 0.93 | 1 |
Mature Eggplant/Ripe Tomato | 1.15475 | 0.373 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.90753 | 0.944 |
1-1-2/M82 | 1.33091 | 1 |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.11918 | 1 |
1-3/M82 | 2.4254 | 0.255 |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.00722 | 1 |
3-2/M82 | 1.17714 | |
4-1-1/M82 | 1.01962 | 1 |
4-1/M82 | 0.63819 | |
4-3-2/M82 | 1.31266 | 0.262 |
4-3/M82 | 1.04216 | 1 |
5-3/M82 | 1.08898 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | 1.05091 | 1 |
7-1/M82 | 0.96476 | 1 |
7-2/M82 | 1.00352 | |
9-3-2/M82 | 1.17093 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.83325 | |
IL2-6/WTpooled | 1.01404 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.25263 | 0.362 |
IL12-4/WTpooled | 1.31242 | 0.624 |
IL1-4/WTpooled | 1.05225 | |
WT/WTpooled | 0.99593 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.79868 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.9928 | 1 |
DC3000/delta hrp 6h | 1.10293 | 1 |
DC3000/delta hrp 12h | 1.13766 | 1 |
DC3000/delta hrp 24h | 0.4957 | 0.087 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.00266 | 1 |
Exp 36h | 0.71957 | 0.426 |
Exp 60h | 0.67275 | 0.251 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99972 | 1 |
Var 0h | 1.02524 | 1 |
Var 12h I row2-row1 | 0.81885 | 0.77 |
Var 12h NI row2-row1 | 1.08065 | 1 |
Var 36h I row2-row1 | 0.77604 | 1 |
Var 36h NI row2-row1 | 0.44753 | |
Var 60h I row2-row1 | 1.05059 | |
Var 60h NI row2-row1 | 1.09551 | 1 |
Time course 0hI-0hNI | 0.8236 | 0.047 |
Time course 12hI-12hNI | 1.03452 | 0.668 |
Time course 36hI-36hNI | 0.87834 | 0.23 |
Time course 60hI-60hNI | 0.88016 | 0.081 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.8353 | 0.272 |
transgenic ySAMdc/azygous control (breaker) | 1.17051 | 0.248 |
transgenic ySAMdc/azygous control (red) | 0.90355 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.04067 | 0.261 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.5349 | 0.239 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.32483 | 0.083 |
Manapal/WT (break) | 1.03433 | 1 |
Manapal/WT (red) | 1.01079 | 1 |
|
|