Expression of 1-1-6.2.2.15

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.938580.664
27DAP/17DAP1.275290.828
39DAP/27DAP1.105140.902
41DAP/39DAP0.925080.706
42DAP/41DAP1.138230.994
43DAP/42DAP1.039430.937
47DAP/43DAP1.185540.979
52DAP/47DAP0.942320.721
57DAP/52DAP1.056660.996

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.92810.125
17DAP/reference0.94210.419
27DAP/reference0.941350.314
39DAP/reference0.912960.234
41DAP/reference0.869690.085
42DAP/reference0.980890.359
43DAP/reference1.030710.812
47DAP/reference0.939630.106
52DAP/reference1.049470.84
57DAP/reference1.180690.038

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.060280.65
27DAP/17DAP1.168260.514
39DAP/27DAP1.037711
41DAP/39DAP1.194540.735
42DAP/41DAP0.89030.529
43DAP/42DAP1.063910.513
47DAP/43DAP1.115550.63
52DAP/47DAP1.209560.46
57DAP/52DAP1.172780.563
57DAP/7DAP0.96251

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.270010.065
17DAP/reference1.623770.008
27DAP/reference1.439470.008
39DAP/reference1.638680.033
41DAP/reference1.652250.014
42DAP/reference1.529840.008
43DAP/reference1.44050.013
47DAP/reference1.011461
52DAP/reference1.435380.007
57DAP/reference1.320620.049

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.003170.869
17DAP/reference0.934260.176
27DAP/reference1.021431
39DAP/reference0.958210.322
41DAP/reference0.968330.384
42DAP/reference1.015311
43DAP/reference1.150830.598
47DAP/reference1.114440.12
52DAP/reference1.049460.747
57DAP/reference1.06620.252

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.154550.377
17DAP/reference1.079050.924
27DAP/reference1.596930.02
39DAP/reference1.617010.02
41DAP/reference1.462340.086
42DAP/reference1.2730.189
43DAP/reference1.369850.052
47DAP/reference1.035531
52DAP/reference1.24450.318
57DAP/reference1.165410.354

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.924981
26DAP/20DAP0.696180.512
34DAP/26DAP0.886230.816
51DAP/34DAP1.399790.032
52DAP/51DAP1.337220.094
53DAP/52DAP0.856010.374
55DAP/53DAP1.199210.855
57DAP/55DAP1.341990.178
62DAP/57DAP1.52720.445
68DAP/62DAP0.938210.834
68DAP/14DAP1.065360.85

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.959850.547

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.246060.073
Mature Green Tomato/Ripe Tomato0.480390.021
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato3.286410.258
Mature Eggplant/Ripe Tomato0.054040.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.878710.944
1-1-2/M820.915811
12-2/M82N/AN/A
12-4/M820.991281
1-3/M820.708080.376
2-1-1/M821.583590.764
2-1/M82N/AN/A
2-6/M820.961031
3-2/M82N/AN/A
4-1-1/M820.56788
4-1/M821.53492
4-3-2/M820.80798
4-3/M820.6501
5-3/M820.978481
6-2/M82N/AN/A
6-3/M820.80794
7-1/M821.1288
7-2/M821.048071
9-3-2/M820.695740.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.090190.788
IL7-5/WTpooled0.20588
IL7-3/WTpooled1.070181
IL12-4/WTpooled1.064170.737
IL1-4/WTpooled0.986541
WT/WTpooled0.981371

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.035991

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.016110.921
DC3000/delta hrp 6h1.143770.95
DC3000/delta hrp 12h1.919061
DC3000/delta hrp 24h1.10980.308

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36h1.532071
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.97841
Var 0hN/AN/A
Var 12h I row2-row11.1377
Var 12h NI row2-row10.95710.82
Var 36h I row2-row10.950340.203
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row10.89107
Time course 0hI-0hNI1.198890.662
Time course 12hI-12hNI1.153110.467
Time course 36hI-36hNI1.213160.013
Time course 60hI-60hNI1.525640.009

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.958770.722
transgenic ySAMdc/azygous control (breaker)1.161311
transgenic ySAMdc/azygous control (red)1.106020.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.012270.587

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.877740.35

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.146661
Manapal/WT (break)0.69380.299
Manapal/WT (red)1.469330.133