Expression of 1-1-6.2.2.15
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.93858 | 0.664 |
27DAP/17DAP | 1.27529 | 0.828 |
39DAP/27DAP | 1.10514 | 0.902 |
41DAP/39DAP | 0.92508 | 0.706 |
42DAP/41DAP | 1.13823 | 0.994 |
43DAP/42DAP | 1.03943 | 0.937 |
47DAP/43DAP | 1.18554 | 0.979 |
52DAP/47DAP | 0.94232 | 0.721 |
57DAP/52DAP | 1.05666 | 0.996 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.9281 | 0.125 |
17DAP/reference | 0.9421 | 0.419 |
27DAP/reference | 0.94135 | 0.314 |
39DAP/reference | 0.91296 | 0.234 |
41DAP/reference | 0.86969 | 0.085 |
42DAP/reference | 0.98089 | 0.359 |
43DAP/reference | 1.03071 | 0.812 |
47DAP/reference | 0.93963 | 0.106 |
52DAP/reference | 1.04947 | 0.84 |
57DAP/reference | 1.18069 | 0.038 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.06028 | 0.65 |
27DAP/17DAP | 1.16826 | 0.514 |
39DAP/27DAP | 1.03771 | 1 |
41DAP/39DAP | 1.19454 | 0.735 |
42DAP/41DAP | 0.8903 | 0.529 |
43DAP/42DAP | 1.06391 | 0.513 |
47DAP/43DAP | 1.11555 | 0.63 |
52DAP/47DAP | 1.20956 | 0.46 |
57DAP/52DAP | 1.17278 | 0.563 |
57DAP/7DAP | 0.9625 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.27001 | 0.065 |
17DAP/reference | 1.62377 | 0.008 |
27DAP/reference | 1.43947 | 0.008 |
39DAP/reference | 1.63868 | 0.033 |
41DAP/reference | 1.65225 | 0.014 |
42DAP/reference | 1.52984 | 0.008 |
43DAP/reference | 1.4405 | 0.013 |
47DAP/reference | 1.01146 | 1 |
52DAP/reference | 1.43538 | 0.007 |
57DAP/reference | 1.32062 | 0.049 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.00317 | 0.869 |
17DAP/reference | 0.93426 | 0.176 |
27DAP/reference | 1.02143 | 1 |
39DAP/reference | 0.95821 | 0.322 |
41DAP/reference | 0.96833 | 0.384 |
42DAP/reference | 1.01531 | 1 |
43DAP/reference | 1.15083 | 0.598 |
47DAP/reference | 1.11444 | 0.12 |
52DAP/reference | 1.04946 | 0.747 |
57DAP/reference | 1.0662 | 0.252 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.15455 | 0.377 |
17DAP/reference | 1.07905 | 0.924 |
27DAP/reference | 1.59693 | 0.02 |
39DAP/reference | 1.61701 | 0.02 |
41DAP/reference | 1.46234 | 0.086 |
42DAP/reference | 1.273 | 0.189 |
43DAP/reference | 1.36985 | 0.052 |
47DAP/reference | 1.03553 | 1 |
52DAP/reference | 1.2445 | 0.318 |
57DAP/reference | 1.16541 | 0.354 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.92498 | 1 |
26DAP/20DAP | 0.69618 | 0.512 |
34DAP/26DAP | 0.88623 | 0.816 |
51DAP/34DAP | 1.39979 | 0.032 |
52DAP/51DAP | 1.33722 | 0.094 |
53DAP/52DAP | 0.85601 | 0.374 |
55DAP/53DAP | 1.19921 | 0.855 |
57DAP/55DAP | 1.34199 | 0.178 |
62DAP/57DAP | 1.5272 | 0.445 |
68DAP/62DAP | 0.93821 | 0.834 |
68DAP/14DAP | 1.06536 | 0.85 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.95985 | 0.547 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.24606 | 0.073 |
Mature Green Tomato/Ripe Tomato | 0.48039 | 0.021 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 3.28641 | 0.258 |
Mature Eggplant/Ripe Tomato | 0.05404 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.87871 | 0.944 |
1-1-2/M82 | 0.91581 | 1 |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.99128 | 1 |
1-3/M82 | 0.70808 | 0.376 |
2-1-1/M82 | 1.58359 | 0.764 |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.96103 | 1 |
3-2/M82 | N/A | N/A |
4-1-1/M82 | 0.56788 | |
4-1/M82 | 1.53492 | |
4-3-2/M82 | 0.80798 | |
4-3/M82 | 0.6501 | |
5-3/M82 | 0.97848 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | 0.80794 | |
7-1/M82 | 1.1288 | |
7-2/M82 | 1.04807 | 1 |
9-3-2/M82 | 0.69574 | 0.449 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.09019 | 0.788 |
IL7-5/WTpooled | 0.20588 | |
IL7-3/WTpooled | 1.07018 | 1 |
IL12-4/WTpooled | 1.06417 | 0.737 |
IL1-4/WTpooled | 0.98654 | 1 |
WT/WTpooled | 0.98137 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.03599 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.01611 | 0.921 |
DC3000/delta hrp 6h | 1.14377 | 0.95 |
DC3000/delta hrp 12h | 1.91906 | 1 |
DC3000/delta hrp 24h | 1.1098 | 0.308 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | 1.53207 | 1 |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.9784 | 1 |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | 1.1377 | |
Var 12h NI row2-row1 | 0.9571 | 0.82 |
Var 36h I row2-row1 | 0.95034 | 0.203 |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | 0.89107 | |
Time course 0hI-0hNI | 1.19889 | 0.662 |
Time course 12hI-12hNI | 1.15311 | 0.467 |
Time course 36hI-36hNI | 1.21316 | 0.013 |
Time course 60hI-60hNI | 1.52564 | 0.009 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.95877 | 0.722 |
transgenic ySAMdc/azygous control (breaker) | 1.16131 | 1 |
transgenic ySAMdc/azygous control (red) | 1.10602 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.01227 | 0.587 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.87774 | 0.35 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.14666 | 1 |
Manapal/WT (break) | 0.6938 | 0.299 |
Manapal/WT (red) | 1.46933 | 0.133 |
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