Expression of 1-1-6.2.2.5
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.69833 | 0.105 |
27DAP/17DAP | 1.17132 | 1 |
39DAP/27DAP | 1.02872 | 1 |
41DAP/39DAP | 1.23218 | 0.58 |
42DAP/41DAP | 0.9678 | 1 |
43DAP/42DAP | 1.01979 | 1 |
47DAP/43DAP | 1.58596 | 0.349 |
52DAP/47DAP | 0.87765 | 0.654 |
57DAP/52DAP | 1.08751 | 0.977 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.81072 | 0.062 |
17DAP/reference | 0.8 | 0.008 |
27DAP/reference | 0.88421 | 0.201 |
39DAP/reference | 0.79215 | 0.016 |
41DAP/reference | 0.74973 | 0.008 |
42DAP/reference | 0.92425 | 0.111 |
43DAP/reference | 0.98626 | 0.763 |
47DAP/reference | 0.96152 | 0.345 |
52DAP/reference | 1.11848 | 0.167 |
57DAP/reference | 1.22262 | 0.03 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.07813 | 0.826 |
27DAP/17DAP | 0.98622 | 0.919 |
39DAP/27DAP | 0.8033 | 0.088 |
41DAP/39DAP | 1.09639 | 0.727 |
42DAP/41DAP | 0.99219 | 0.865 |
43DAP/42DAP | 1.12468 | 0.23 |
47DAP/43DAP | 1.2168 | 0.111 |
52DAP/47DAP | 0.92479 | 0.694 |
57DAP/52DAP | 0.76594 | 0.272 |
57DAP/7DAP | 1.08988 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.73206 | |
17DAP/reference | 1.0028 | 0.599 |
27DAP/reference | 1.97044 | |
39DAP/reference | 1.17458 | 0.297 |
41DAP/reference | 1.12268 | 0.491 |
42DAP/reference | 0.9051 | 0.262 |
43DAP/reference | 1.10103 | 0.569 |
47DAP/reference | 1.14085 | 0.241 |
52DAP/reference | 1.02391 | 0.802 |
57DAP/reference | 0.94344 | 0.382 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.71741 | 0.008 |
17DAP/reference | 0.58934 | 0.004 |
27DAP/reference | 0.81941 | 0.044 |
39DAP/reference | 0.92313 | 0.183 |
41DAP/reference | 0.9534 | 0.164 |
42DAP/reference | 1.08903 | 0.519 |
43DAP/reference | 0.7048 | 0.027 |
47DAP/reference | 0.88572 | 0.036 |
52DAP/reference | 0.92411 | 0.156 |
57DAP/reference | 0.80919 | 0.035 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99781 | 1 |
17DAP/reference | 0.76038 | 0.002 |
27DAP/reference | 1.06899 | |
39DAP/reference | 0.90969 | |
41DAP/reference | 1.27411 | 0.455 |
42DAP/reference | 1.00196 | 1 |
43DAP/reference | 1.41612 | 0.285 |
47DAP/reference | 1.11395 | 0.355 |
52DAP/reference | 1.07729 | 0.862 |
57DAP/reference | 1.4192 | 0.061 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.04735 | 1 |
26DAP/20DAP | 0.80768 | 0.512 |
34DAP/26DAP | 1.05051 | 0.92 |
51DAP/34DAP | 0.87324 | 0.213 |
52DAP/51DAP | 1.25166 | 0.202 |
53DAP/52DAP | 1.06943 | 0.797 |
55DAP/53DAP | 1.0665 | 1 |
57DAP/55DAP | 0.98726 | 0.854 |
62DAP/57DAP | 1.22848 | |
68DAP/62DAP | 1.6663 | 0.353 |
68DAP/14DAP | 1.30469 | 0.029 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.5059 | 0.077 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.63163 | 0.038 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.24903 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.13623 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.1006 | |
1-1-2/M82 | 1.07622 | 1 |
12-2/M82 | 0.96858 | 1 |
12-4/M82 | 1.07355 | 1 |
1-3/M82 | 1.09171 | 1 |
2-1-1/M82 | 1.04588 | 1 |
2-1/M82 | 0.98634 | 0.345 |
2-6/M82 | 0.9478 | 1 |
3-2/M82 | 0.97162 | |
4-1-1/M82 | 0.98556 | 1 |
4-1/M82 | 0.75917 | |
4-3-2/M82 | 0.99399 | 1 |
4-3/M82 | 0.83568 | 0.72 |
5-3/M82 | 1.14461 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | 0.88675 | 1 |
7-1/M82 | 0.82718 | |
7-2/M82 | 1.05071 | |
9-3-2/M82 | 0.95836 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.79056 | 0.321 |
IL2-6/WTpooled | 1.29715 | 0.419 |
IL7-5/WTpooled | 0.95027 | |
IL7-3/WTpooled | 0.8334 | 0.31 |
IL12-4/WTpooled | 1.14374 | 0.624 |
IL1-4/WTpooled | 0.92788 | 0.457 |
WT/WTpooled | 1.12406 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.912 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.88359 | 0.941 |
DC3000/delta hrp 6h | 1.58452 | 0.978 |
DC3000/delta hrp 12h | 1.10375 | 1 |
DC3000/delta hrp 24h | 0.56836 | 0.034 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 0.71102 | |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.76389 | 1 |
Exp 36h | 0.74082 | 0.456 |
Exp 60h | 0.82721 | 0.664 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.98021 | 1 |
Var 0h | 1.35409 | 0.421 |
Var 12h I row2-row1 | 0.70546 | 0.357 |
Var 12h NI row2-row1 | 0.9715 | 0.906 |
Var 36h I row2-row1 | 0.7493 | 1 |
Var 36h NI row2-row1 | 0.8571 | 0.645 |
Var 60h I row2-row1 | 1.17847 | |
Var 60h NI row2-row1 | 1.07617 | 0.904 |
Time course 0hI-0hNI | 0.95196 | 0.709 |
Time course 12hI-12hNI | 0.85768 | 0.033 |
Time course 36hI-36hNI | 0.86447 | 0.045 |
Time course 60hI-60hNI | 0.78542 | 0.015 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.80688 | 0.32 |
transgenic ySAMdc/azygous control (breaker) | 1.06138 | 1 |
transgenic ySAMdc/azygous control (red) | 0.96789 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.17104 | 0.073 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.361 | 0.233 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.81423 | 1 |
Manapal/WT (break) | 0.78201 | 0.333 |
Manapal/WT (red) | 0.6568 | 0.181 |
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