Expression of 1-1-6.2.2.5

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.698330.105
27DAP/17DAP1.171321
39DAP/27DAP1.028721
41DAP/39DAP1.232180.58
42DAP/41DAP0.96781
43DAP/42DAP1.019791
47DAP/43DAP1.585960.349
52DAP/47DAP0.877650.654
57DAP/52DAP1.087510.977

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.810720.062
17DAP/reference0.80.008
27DAP/reference0.884210.201
39DAP/reference0.792150.016
41DAP/reference0.749730.008
42DAP/reference0.924250.111
43DAP/reference0.986260.763
47DAP/reference0.961520.345
52DAP/reference1.118480.167
57DAP/reference1.222620.03

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.078130.826
27DAP/17DAP0.986220.919
39DAP/27DAP0.80330.088
41DAP/39DAP1.096390.727
42DAP/41DAP0.992190.865
43DAP/42DAP1.124680.23
47DAP/43DAP1.21680.111
52DAP/47DAP0.924790.694
57DAP/52DAP0.765940.272
57DAP/7DAP1.089881

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.73206
17DAP/reference1.00280.599
27DAP/reference1.97044
39DAP/reference1.174580.297
41DAP/reference1.122680.491
42DAP/reference0.90510.262
43DAP/reference1.101030.569
47DAP/reference1.140850.241
52DAP/reference1.023910.802
57DAP/reference0.943440.382

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.717410.008
17DAP/reference0.589340.004
27DAP/reference0.819410.044
39DAP/reference0.923130.183
41DAP/reference0.95340.164
42DAP/reference1.089030.519
43DAP/reference0.70480.027
47DAP/reference0.885720.036
52DAP/reference0.924110.156
57DAP/reference0.809190.035

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.997811
17DAP/reference0.760380.002
27DAP/reference1.06899
39DAP/reference0.90969
41DAP/reference1.274110.455
42DAP/reference1.001961
43DAP/reference1.416120.285
47DAP/reference1.113950.355
52DAP/reference1.077290.862
57DAP/reference1.41920.061

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.047351
26DAP/20DAP0.807680.512
34DAP/26DAP1.050510.92
51DAP/34DAP0.873240.213
52DAP/51DAP1.251660.202
53DAP/52DAP1.069430.797
55DAP/53DAP1.06651
57DAP/55DAP0.987260.854
62DAP/57DAP1.22848
68DAP/62DAP1.66630.353
68DAP/14DAP1.304690.029

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.50590.077

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.631630.038
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.249030.224
Mature Eggplant/Ripe Tomato0.136230.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.1006
1-1-2/M821.076221
12-2/M820.968581
12-4/M821.073551
1-3/M821.091711
2-1-1/M821.045881
2-1/M820.986340.345
2-6/M820.94781
3-2/M820.97162
4-1-1/M820.985561
4-1/M820.75917
4-3-2/M820.993991
4-3/M820.835680.72
5-3/M821.144611
6-2/M82N/AN/A
6-3/M820.886751
7-1/M820.82718
7-2/M821.05071
9-3-2/M820.958361

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.790560.321
IL2-6/WTpooled1.297150.419
IL7-5/WTpooled0.95027
IL7-3/WTpooled0.83340.31
IL12-4/WTpooled1.143740.624
IL1-4/WTpooled0.927880.457
WT/WTpooled1.124061

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.9120.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.883590.941
DC3000/delta hrp 6h1.584520.978
DC3000/delta hrp 12h1.103751
DC3000/delta hrp 24h0.568360.034

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB0.71102

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.763891
Exp 36h0.740820.456
Exp 60h0.827210.664

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.980211
Var 0h1.354090.421
Var 12h I row2-row10.705460.357
Var 12h NI row2-row10.97150.906
Var 36h I row2-row10.74931
Var 36h NI row2-row10.85710.645
Var 60h I row2-row11.17847
Var 60h NI row2-row11.076170.904
Time course 0hI-0hNI0.951960.709
Time course 12hI-12hNI0.857680.033
Time course 36hI-36hNI0.864470.045
Time course 60hI-60hNI0.785420.015

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.806880.32
transgenic ySAMdc/azygous control (breaker)1.061381
transgenic ySAMdc/azygous control (red)0.967891

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.171040.073

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.3610.233

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.814231
Manapal/WT (break)0.782010.333
Manapal/WT (red)0.65680.181