Expression of 1-1-6.2.2.8

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.03990.893
27DAP/17DAP0.973640.982
39DAP/27DAP0.964070.682
41DAP/39DAP1.226330.284
42DAP/41DAP1.065730.983
43DAP/42DAP0.93430.829
47DAP/43DAP0.954370.828
52DAP/47DAP1.397730.388
57DAP/52DAP1.036941

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.070620.48
17DAP/reference1.036310.229
27DAP/reference0.976520.552
39DAP/reference0.993190.901
41DAP/reference0.997641
42DAP/reference1.01171
43DAP/reference0.99460.861
47DAP/reference1.040750.284
52DAP/reference1.013860.991
57DAP/reference0.969470.308

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.005081
27DAP/17DAP1.004560.995
39DAP/27DAP1.020280.685
41DAP/39DAP1.027170.837
42DAP/41DAP1.003890.936
43DAP/42DAP0.972570.558
47DAP/43DAP0.997570.997
52DAP/47DAP1.018060.933
57DAP/52DAP1.034040.798
57DAP/7DAP1.015481

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.912340.016
17DAP/reference0.98110.253
27DAP/reference0.992320.53
39DAP/reference0.989120.474
41DAP/reference0.965850.259
42DAP/reference0.961850.355
43DAP/reference1.057430.537
47DAP/reference0.913870.222
52DAP/reference1.048060.428
57DAP/reference1.086770.468

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.06460.384
17DAP/reference1.119060.161
27DAP/reference1.009321
39DAP/reference0.957710.25
41DAP/reference0.984750.505
42DAP/reference1.08210.555
43DAP/reference1.104170.288
47DAP/reference0.959940.168
52DAP/reference0.987220.433
57DAP/reference0.995250.789

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.953340.082
17DAP/reference0.962160.146
27DAP/reference0.982160.184
39DAP/reference0.933540.076
41DAP/reference0.943190.132
42DAP/reference0.888470.032
43DAP/reference0.989420.66
47DAP/reference0.932990.249
52DAP/reference0.93390.385
57DAP/reference0.818710.022

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.059510.878
26DAP/20DAP0.956181
34DAP/26DAP1.004361
51DAP/34DAP1.051690.854
52DAP/51DAP0.965641
53DAP/52DAP1.038280.868
55DAP/53DAP1.096960.764
57DAP/55DAP0.968960.872
62DAP/57DAP0.988381
68DAP/62DAP1.338930.383
68DAP/14DAP0.969411

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.076350.782

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.830650.021
Immature Eggplant/Mature Eggplant0.955180.808
Ripe Pepper/Ripe Tomato1.23212
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.942650.883
1-1-2/M820.95721
12-2/M820.952690.955
12-4/M820.962960.358
1-3/M820.980810.501
2-1-1/M820.994021
2-1/M82N/AN/A
2-6/M820.931031
3-2/M820.977141
4-1-1/M821.056951
4-1/M820.645821
4-3-2/M820.989451
4-3/M820.932940.72
5-3/M820.977371
6-2/M821.038350.253
6-3/M820.982871
7-1/M821.038711
7-2/M820.969740.796
9-3-2/M820.879970.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.836791
IL2-6/WTpooled1.279680.419
IL7-5/WTpooled1.56943
IL7-3/WTpooled1.059811
IL12-4/WTpooled0.96331
IL1-4/WTpooled1.038271
WT/WTpooled0.965631

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.219990.309

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.057470.894
DC3000/delta hrp 6h1.138711
DC3000/delta hrp 12h1.032771
DC3000/delta hrp 24h1.026970.673

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.058040.183
DC3000 delta B/DC3000 delta AB1.088290.377

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.458820.254
Exp 36h1.682350.693
Exp 60h1.576130.215

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.976111
Var 0h1.405070.421
Var 12h I row2-row11.2450.224
Var 12h NI row2-row11.206160.649
Var 36h I row2-row10.980561
Var 36h NI row2-row10.876480.645
Var 60h I row2-row10.997141
Var 60h NI row2-row10.989481
Time course 0hI-0hNI1.041630.867
Time course 12hI-12hNI1.225520.036
Time course 36hI-36hNI1.452070.005
Time course 60hI-60hNI1.383770.011

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.928430.246
transgenic ySAMdc/azygous control (breaker)1.532570.166
transgenic ySAMdc/azygous control (red)1.062320.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.017850.372

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.781780.237

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)2.681240.083
Manapal/WT (break)1.375160.183
Manapal/WT (red)1.142921