Expression of 1-1-6.2.2.8
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.0399 | 0.893 |
27DAP/17DAP | 0.97364 | 0.982 |
39DAP/27DAP | 0.96407 | 0.682 |
41DAP/39DAP | 1.22633 | 0.284 |
42DAP/41DAP | 1.06573 | 0.983 |
43DAP/42DAP | 0.9343 | 0.829 |
47DAP/43DAP | 0.95437 | 0.828 |
52DAP/47DAP | 1.39773 | 0.388 |
57DAP/52DAP | 1.03694 | 1 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.07062 | 0.48 |
17DAP/reference | 1.03631 | 0.229 |
27DAP/reference | 0.97652 | 0.552 |
39DAP/reference | 0.99319 | 0.901 |
41DAP/reference | 0.99764 | 1 |
42DAP/reference | 1.0117 | 1 |
43DAP/reference | 0.9946 | 0.861 |
47DAP/reference | 1.04075 | 0.284 |
52DAP/reference | 1.01386 | 0.991 |
57DAP/reference | 0.96947 | 0.308 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.00508 | 1 |
27DAP/17DAP | 1.00456 | 0.995 |
39DAP/27DAP | 1.02028 | 0.685 |
41DAP/39DAP | 1.02717 | 0.837 |
42DAP/41DAP | 1.00389 | 0.936 |
43DAP/42DAP | 0.97257 | 0.558 |
47DAP/43DAP | 0.99757 | 0.997 |
52DAP/47DAP | 1.01806 | 0.933 |
57DAP/52DAP | 1.03404 | 0.798 |
57DAP/7DAP | 1.01548 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.91234 | 0.016 |
17DAP/reference | 0.9811 | 0.253 |
27DAP/reference | 0.99232 | 0.53 |
39DAP/reference | 0.98912 | 0.474 |
41DAP/reference | 0.96585 | 0.259 |
42DAP/reference | 0.96185 | 0.355 |
43DAP/reference | 1.05743 | 0.537 |
47DAP/reference | 0.91387 | 0.222 |
52DAP/reference | 1.04806 | 0.428 |
57DAP/reference | 1.08677 | 0.468 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.0646 | 0.384 |
17DAP/reference | 1.11906 | 0.161 |
27DAP/reference | 1.00932 | 1 |
39DAP/reference | 0.95771 | 0.25 |
41DAP/reference | 0.98475 | 0.505 |
42DAP/reference | 1.0821 | 0.555 |
43DAP/reference | 1.10417 | 0.288 |
47DAP/reference | 0.95994 | 0.168 |
52DAP/reference | 0.98722 | 0.433 |
57DAP/reference | 0.99525 | 0.789 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.95334 | 0.082 |
17DAP/reference | 0.96216 | 0.146 |
27DAP/reference | 0.98216 | 0.184 |
39DAP/reference | 0.93354 | 0.076 |
41DAP/reference | 0.94319 | 0.132 |
42DAP/reference | 0.88847 | 0.032 |
43DAP/reference | 0.98942 | 0.66 |
47DAP/reference | 0.93299 | 0.249 |
52DAP/reference | 0.9339 | 0.385 |
57DAP/reference | 0.81871 | 0.022 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.05951 | 0.878 |
26DAP/20DAP | 0.95618 | 1 |
34DAP/26DAP | 1.00436 | 1 |
51DAP/34DAP | 1.05169 | 0.854 |
52DAP/51DAP | 0.96564 | 1 |
53DAP/52DAP | 1.03828 | 0.868 |
55DAP/53DAP | 1.09696 | 0.764 |
57DAP/55DAP | 0.96896 | 0.872 |
62DAP/57DAP | 0.98838 | 1 |
68DAP/62DAP | 1.33893 | 0.383 |
68DAP/14DAP | 0.96941 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.07635 | 0.782 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.83065 | 0.021 |
Immature Eggplant/Mature Eggplant | 0.95518 | 0.808 |
Ripe Pepper/Ripe Tomato | 1.23212 | |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.94265 | 0.883 |
1-1-2/M82 | 0.9572 | 1 |
12-2/M82 | 0.95269 | 0.955 |
12-4/M82 | 0.96296 | 0.358 |
1-3/M82 | 0.98081 | 0.501 |
2-1-1/M82 | 0.99402 | 1 |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.93103 | 1 |
3-2/M82 | 0.97714 | 1 |
4-1-1/M82 | 1.05695 | 1 |
4-1/M82 | 0.64582 | 1 |
4-3-2/M82 | 0.98945 | 1 |
4-3/M82 | 0.93294 | 0.72 |
5-3/M82 | 0.97737 | 1 |
6-2/M82 | 1.03835 | 0.253 |
6-3/M82 | 0.98287 | 1 |
7-1/M82 | 1.03871 | 1 |
7-2/M82 | 0.96974 | 0.796 |
9-3-2/M82 | 0.87997 | 0.449 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.83679 | 1 |
IL2-6/WTpooled | 1.27968 | 0.419 |
IL7-5/WTpooled | 1.56943 | |
IL7-3/WTpooled | 1.05981 | 1 |
IL12-4/WTpooled | 0.9633 | 1 |
IL1-4/WTpooled | 1.03827 | 1 |
WT/WTpooled | 0.96563 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.21999 | 0.309 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.05747 | 0.894 |
DC3000/delta hrp 6h | 1.13871 | 1 |
DC3000/delta hrp 12h | 1.03277 | 1 |
DC3000/delta hrp 24h | 1.02697 | 0.673 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.05804 | 0.183 |
DC3000 delta B/DC3000 delta AB | 1.08829 | 0.377 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.45882 | 0.254 |
Exp 36h | 1.68235 | 0.693 |
Exp 60h | 1.57613 | 0.215 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.97611 | 1 |
Var 0h | 1.40507 | 0.421 |
Var 12h I row2-row1 | 1.245 | 0.224 |
Var 12h NI row2-row1 | 1.20616 | 0.649 |
Var 36h I row2-row1 | 0.98056 | 1 |
Var 36h NI row2-row1 | 0.87648 | 0.645 |
Var 60h I row2-row1 | 0.99714 | 1 |
Var 60h NI row2-row1 | 0.98948 | 1 |
Time course 0hI-0hNI | 1.04163 | 0.867 |
Time course 12hI-12hNI | 1.22552 | 0.036 |
Time course 36hI-36hNI | 1.45207 | 0.005 |
Time course 60hI-60hNI | 1.38377 | 0.011 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.92843 | 0.246 |
transgenic ySAMdc/azygous control (breaker) | 1.53257 | 0.166 |
transgenic ySAMdc/azygous control (red) | 1.06232 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.01785 | 0.372 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.78178 | 0.237 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 2.68124 | 0.083 |
Manapal/WT (break) | 1.37516 | 0.183 |
Manapal/WT (red) | 1.14292 | 1 |
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