Expression of 1-1-6.2.20.11

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.261830.575
27DAP/17DAP1.263380.744
39DAP/27DAP0.575250.27
41DAP/39DAP1.55850.295
42DAP/41DAP1.017291
43DAP/42DAP1.251610.746
47DAP/43DAP1.197810.442
52DAP/47DAP0.859590.615
57DAP/52DAP1.071390.969

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.964280.344
17DAP/reference1.114520.055
27DAP/reference1.071850.314
39DAP/reference1.057270.386
41DAP/reference1.263190.014
42DAP/reference0.998610.587
43DAP/reference1.023280.617
47DAP/reference0.964020.258
52DAP/reference0.959770.405
57DAP/reference0.966460.248

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.995940.801
27DAP/17DAP1.226470.554
39DAP/27DAP1.011721
41DAP/39DAP1.033741
42DAP/41DAP1.043950.858
43DAP/42DAP1.118350.23
47DAP/43DAP0.915530.701
52DAP/47DAP0.990230.925
57DAP/52DAP0.911510.188
57DAP/7DAP1.093321

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.990120.682
17DAP/reference0.79010.011
27DAP/reference0.782540.011
39DAP/reference0.753880.021
41DAP/reference0.836180.094
42DAP/reference0.79680.058
43DAP/reference0.847550.145
47DAP/reference0.881540.383
52DAP/reference0.956360.332
57DAP/reference0.913770.128

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.070630.172
17DAP/reference0.960940.245
27DAP/reference0.923670.304
39DAP/reference0.873810.108
41DAP/reference0.894660.16
42DAP/reference0.91630.089
43DAP/reference0.960850.414
47DAP/reference0.986080.434
52DAP/reference0.95250.28
57DAP/reference1.058780.523

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.911310.183
17DAP/reference0.988370.763
27DAP/reference0.883860.155
39DAP/reference0.836740.025
41DAP/reference0.930850.417
42DAP/reference0.876810.287
43DAP/reference1.070040.634
47DAP/reference1.083940.171
52DAP/reference0.877330.186
57DAP/reference0.859880.177

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.082910.945
26DAP/20DAP0.855040.512
34DAP/26DAP1.117170.819
51DAP/34DAP0.957780.791
52DAP/51DAP1.213350.092
53DAP/52DAP1.154940.428
55DAP/53DAP0.910880.686
57DAP/55DAP1.437010.805
62DAP/57DAP1.085691
68DAP/62DAP1.022820.81
68DAP/14DAP1.081950.889

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.74620.122

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.483940.058
Mature Green Tomato/Ripe Tomato1.481230.02
Immature Eggplant/Mature Eggplant1.572020.054
Ripe Pepper/Ripe Tomato4.234551
Mature Eggplant/Ripe Tomato1.497831

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.006161
1-1-2/M820.95641
12-2/M821.00171
12-4/M820.861451
1-3/M821.005481
2-1-1/M821.1460.764
2-1/M821.186571
2-6/M820.955741
3-2/M820.91566
4-1-1/M820.963561
4-1/M820.828881
4-3-2/M820.931411
4-3/M821.124931
5-3/M820.935591
6-2/M821.078971
6-3/M821.086521
7-1/M821.019141
7-2/M821.012961
9-3-2/M820.826631

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.816410.358
IL7-5/WTpooled0.435170.483
IL7-3/WTpooled0.680570.418
IL12-4/WTpooled0.877891
IL1-4/WTpooled0.824370.699
WT/WTpooled0.993791

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.26436

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.928320.849
DC3000/delta hrp 6h1.099421
DC3000/delta hrp 12h1.08381
DC3000/delta hrp 24h1.060520.71

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB0.88590.445

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.294381
Exp 36h0.833310.661
Exp 60h0.801020.522

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.9556
Var 0hN/AN/A
Var 12h I row2-row10.865270.77
Var 12h NI row2-row10.760730.627
Var 36h I row2-row10.826541
Var 36h NI row2-row11.126481
Var 60h I row2-row11.087181
Var 60h NI row2-row12.377540.904
Time course 0hI-0hNI1.268380.852
Time course 12hI-12hNI0.912540.847
Time course 36hI-36hNI0.928960.38
Time course 60hI-60hNI1.131350.575

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.967380.286
transgenic ySAMdc/azygous control (breaker)1.196840.248
transgenic ySAMdc/azygous control (red)1.178710.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.963360.393

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.139081

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.47010.14
Manapal/WT (break)1.026621
Manapal/WT (red)1.027311