Expression of 1-1-6.2.3.20
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.19945 | 0.63 |
27DAP/17DAP | 1.29879 | 0.799 |
39DAP/27DAP | 0.76862 | 0.474 |
41DAP/39DAP | 1.20487 | 0.545 |
42DAP/41DAP | 0.99816 | 1 |
43DAP/42DAP | 1.11635 | 0.974 |
47DAP/43DAP | 0.90285 | 0.667 |
52DAP/47DAP | 1.07395 | 0.851 |
57DAP/52DAP | 0.99623 | 0.983 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.0198 | 0.846 |
17DAP/reference | 1.07141 | 0.04 |
27DAP/reference | 1.00034 | 0.904 |
39DAP/reference | 0.98197 | 0.704 |
41DAP/reference | 1.0987 | 0.158 |
42DAP/reference | 0.85353 | 0.011 |
43DAP/reference | 0.95574 | 0.519 |
47DAP/reference | 0.90948 | 0.023 |
52DAP/reference | 0.82675 | 0.058 |
57DAP/reference | 0.87317 | 0.068 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.00979 | 1 |
27DAP/17DAP | 1.03319 | 0.9 |
39DAP/27DAP | 1.0737 | 0.471 |
41DAP/39DAP | 1.12628 | 0.748 |
42DAP/41DAP | 0.96441 | 0.695 |
43DAP/42DAP | 1.07186 | 0.25 |
47DAP/43DAP | 0.99045 | 0.954 |
52DAP/47DAP | 1.02664 | 0.9 |
57DAP/52DAP | 0.94299 | 0.29 |
57DAP/7DAP | 1.1846 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.25138 | 0.166 |
17DAP/reference | 1.4798 | 0.042 |
27DAP/reference | 1.60389 | 0.035 |
39DAP/reference | 1.85959 | 0.008 |
41DAP/reference | 1.50055 | 0.02 |
42DAP/reference | 1.55156 | 0.059 |
43DAP/reference | 1.57333 | 0.016 |
47DAP/reference | 1.05659 | 1 |
52DAP/reference | 1.56416 | 0.013 |
57DAP/reference | 1.38632 | 0.023 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.02498 | 0.612 |
17DAP/reference | 0.97455 | 0.51 |
27DAP/reference | 0.86062 | 0.144 |
39DAP/reference | 0.88006 | 0.156 |
41DAP/reference | 0.85066 | 0.041 |
42DAP/reference | 0.92906 | 0.212 |
43DAP/reference | 0.91638 | 0.147 |
47DAP/reference | 0.96096 | 0.24 |
52DAP/reference | 1.01325 | 1 |
57DAP/reference | 1.08243 | 0.094 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.43982 | 0.047 |
17DAP/reference | 1.26565 | 0.321 |
27DAP/reference | 1.36248 | 0.033 |
39DAP/reference | 1.20222 | 0.437 |
41DAP/reference | 1.36805 | 0.162 |
42DAP/reference | 1.21092 | 0.521 |
43DAP/reference | 1.37183 | 0.237 |
47DAP/reference | 0.9472 | 0.24 |
52DAP/reference | 1.24426 | 0.335 |
57DAP/reference | 0.8088 | 0.131 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.078 | 0.56 |
26DAP/20DAP | 0.82534 | 0.317 |
34DAP/26DAP | 1.08195 | 0.819 |
51DAP/34DAP | 1.10952 | 0.524 |
52DAP/51DAP | 0.99016 | 1 |
53DAP/52DAP | 0.95881 | 0.807 |
55DAP/53DAP | 1.04337 | 0.898 |
57DAP/55DAP | 1.09997 | 0.393 |
62DAP/57DAP | 1.12793 | 0.902 |
68DAP/62DAP | 1.00331 | 0.914 |
68DAP/14DAP | 0.95107 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.03543 | 0.496 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.19321 | 0.437 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | 0.8194 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.96455 | 0.944 |
1-1-2/M82 | 1.12655 | |
12-2/M82 | 1.18974 | |
12-4/M82 | 1.29469 | |
1-3/M82 | 0.65415 | 0.378 |
2-1-1/M82 | 1.45303 | |
2-1/M82 | 1.47787 | |
2-6/M82 | 1.09108 | 0.695 |
3-2/M82 | 1.17617 | |
4-1-1/M82 | 0.90659 | 1 |
4-1/M82 | 0.93663 | 1 |
4-3-2/M82 | 0.88787 | 0.698 |
4-3/M82 | 0.74322 | 0.611 |
5-3/M82 | 0.91589 | 0.642 |
6-2/M82 | 1.18768 | |
6-3/M82 | N/A | N/A |
7-1/M82 | 0.60183 | |
7-2/M82 | 0.96499 | 0.881 |
9-3-2/M82 | 0.69933 | 0.355 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | N/A | N/A |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.91438 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.95292 | 1 |
DC3000/delta hrp 6h | 1.26864 | 1 |
DC3000/delta hrp 12h | 0.80972 | 1 |
DC3000/delta hrp 24h | 1.11232 | 0.283 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.86076 | 0.053 |
DC3000 delta B/DC3000 delta AB | 0.90998 | 0.23 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.04392 | 1 |
Exp 36h | 1.4555 | 0.693 |
Exp 60h | 1.3279 | 0.399 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.97499 | 1 |
Var 0h | 0.88838 | 1 |
Var 12h I row2-row1 | 1.07243 | 0.544 |
Var 12h NI row2-row1 | 0.7961 | 0.427 |
Var 36h I row2-row1 | 0.8454 | 1 |
Var 36h NI row2-row1 | 1.24687 | 0.482 |
Var 60h I row2-row1 | 1.0657 | 1 |
Var 60h NI row2-row1 | 1.21916 | 0.904 |
Time course 0hI-0hNI | 0.8084 | 0.071 |
Time course 12hI-12hNI | 1.10192 | 0.615 |
Time course 36hI-36hNI | 0.98641 | 0.621 |
Time course 60hI-60hNI | 0.60055 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.84198 | 0.229 |
transgenic ySAMdc/azygous control (breaker) | 1.0314 | 1 |
transgenic ySAMdc/azygous control (red) | 1.03349 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.01272 | 0.687 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.99096 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.97445 | 1 |
Manapal/WT (break) | 0.96262 | 1 |
Manapal/WT (red) | 1.01448 | 1 |
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