Expression of 1-1-6.2.3.20

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.199450.63
27DAP/17DAP1.298790.799
39DAP/27DAP0.768620.474
41DAP/39DAP1.204870.545
42DAP/41DAP0.998161
43DAP/42DAP1.116350.974
47DAP/43DAP0.902850.667
52DAP/47DAP1.073950.851
57DAP/52DAP0.996230.983

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.01980.846
17DAP/reference1.071410.04
27DAP/reference1.000340.904
39DAP/reference0.981970.704
41DAP/reference1.09870.158
42DAP/reference0.853530.011
43DAP/reference0.955740.519
47DAP/reference0.909480.023
52DAP/reference0.826750.058
57DAP/reference0.873170.068

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.009791
27DAP/17DAP1.033190.9
39DAP/27DAP1.07370.471
41DAP/39DAP1.126280.748
42DAP/41DAP0.964410.695
43DAP/42DAP1.071860.25
47DAP/43DAP0.990450.954
52DAP/47DAP1.026640.9
57DAP/52DAP0.942990.29
57DAP/7DAP1.18461

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.251380.166
17DAP/reference1.47980.042
27DAP/reference1.603890.035
39DAP/reference1.859590.008
41DAP/reference1.500550.02
42DAP/reference1.551560.059
43DAP/reference1.573330.016
47DAP/reference1.056591
52DAP/reference1.564160.013
57DAP/reference1.386320.023

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.024980.612
17DAP/reference0.974550.51
27DAP/reference0.860620.144
39DAP/reference0.880060.156
41DAP/reference0.850660.041
42DAP/reference0.929060.212
43DAP/reference0.916380.147
47DAP/reference0.960960.24
52DAP/reference1.013251
57DAP/reference1.082430.094

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.439820.047
17DAP/reference1.265650.321
27DAP/reference1.362480.033
39DAP/reference1.202220.437
41DAP/reference1.368050.162
42DAP/reference1.210920.521
43DAP/reference1.371830.237
47DAP/reference0.94720.24
52DAP/reference1.244260.335
57DAP/reference0.80880.131

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.0780.56
26DAP/20DAP0.825340.317
34DAP/26DAP1.081950.819
51DAP/34DAP1.109520.524
52DAP/51DAP0.990161
53DAP/52DAP0.958810.807
55DAP/53DAP1.043370.898
57DAP/55DAP1.099970.393
62DAP/57DAP1.127930.902
68DAP/62DAP1.003310.914
68DAP/14DAP0.951071

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.035430.496

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.193210.437
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe Tomato0.8194

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.964550.944
1-1-2/M821.12655
12-2/M821.18974
12-4/M821.29469
1-3/M820.654150.378
2-1-1/M821.45303
2-1/M821.47787
2-6/M821.091080.695
3-2/M821.17617
4-1-1/M820.906591
4-1/M820.936631
4-3-2/M820.887870.698
4-3/M820.743220.611
5-3/M820.915890.642
6-2/M821.18768
6-3/M82N/AN/A
7-1/M820.60183
7-2/M820.964990.881
9-3-2/M820.699330.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooledN/AN/A
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.914380.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.952921
DC3000/delta hrp 6h1.268641
DC3000/delta hrp 12h0.809721
DC3000/delta hrp 24h1.112320.283

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.860760.053
DC3000 delta B/DC3000 delta AB0.909980.23

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.043921
Exp 36h1.45550.693
Exp 60h1.32790.399

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.974991
Var 0h0.888381
Var 12h I row2-row11.072430.544
Var 12h NI row2-row10.79610.427
Var 36h I row2-row10.84541
Var 36h NI row2-row11.246870.482
Var 60h I row2-row11.06571
Var 60h NI row2-row11.219160.904
Time course 0hI-0hNI0.80840.071
Time course 12hI-12hNI1.101920.615
Time course 36hI-36hNI0.986410.621
Time course 60hI-60hNI0.600550.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.841980.229
transgenic ySAMdc/azygous control (breaker)1.03141
transgenic ySAMdc/azygous control (red)1.033490.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.012720.687

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.990961

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.974451
Manapal/WT (break)0.962621
Manapal/WT (red)1.014481