Expression of 1-1-6.2.4.15
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.50829 | 0.026 |
27DAP/17DAP | 0.90457 | 0.796 |
39DAP/27DAP | 0.94606 | 0.67 |
41DAP/39DAP | 1.08623 | 0.772 |
42DAP/41DAP | 0.99106 | 1 |
43DAP/42DAP | 0.92747 | 0.705 |
47DAP/43DAP | 0.74845 | 0.28 |
52DAP/47DAP | 1.03676 | 0.916 |
57DAP/52DAP | 1.12911 | 1 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.8114 | 0.006 |
17DAP/reference | 0.88011 | 0.158 |
27DAP/reference | 0.74695 | 0.035 |
39DAP/reference | 0.79991 | 0.051 |
41DAP/reference | 0.86802 | 0.114 |
42DAP/reference | 0.8192 | 0.004 |
43DAP/reference | 0.7546 | 0.042 |
47DAP/reference | 0.77654 | 0.018 |
52DAP/reference | 0.61458 | 0.024 |
57DAP/reference | 0.80331 | 0.02 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.70351 | 0.035 |
27DAP/17DAP | 0.93092 | 0.724 |
39DAP/27DAP | 0.90526 | 0.105 |
41DAP/39DAP | 1.03533 | 1 |
42DAP/41DAP | 1.09604 | 0.795 |
43DAP/42DAP | 0.88273 | 0.089 |
47DAP/43DAP | 1.11442 | 0.339 |
52DAP/47DAP | 1.04808 | 0.844 |
57DAP/52DAP | 0.71322 | 0.109 |
57DAP/7DAP | 0.61205 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.75582 | 0.025 |
17DAP/reference | 1.15005 | 0.199 |
27DAP/reference | 1.02397 | 0.974 |
39DAP/reference | 0.97532 | 0.411 |
41DAP/reference | 1.20041 | 0.027 |
42DAP/reference | 1.00282 | 0.828 |
43DAP/reference | 1.07901 | 0.432 |
47DAP/reference | 1.12279 | 0.514 |
52DAP/reference | 0.87289 | 0.09 |
57DAP/reference | 0.78208 | 0.056 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.35193 | 0.1 |
17DAP/reference | 0.77482 | 0.021 |
27DAP/reference | 0.85454 | 0.181 |
39DAP/reference | 0.74614 | 0.091 |
41DAP/reference | 1.00351 | 0.666 |
42DAP/reference | 0.86384 | 0.027 |
43DAP/reference | 0.71301 | 0.022 |
47DAP/reference | 0.81563 | 0.012 |
52DAP/reference | 0.69242 | 0.007 |
57DAP/reference | 0.82807 | 0.073 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 2.49766 | 0.019 |
17DAP/reference | 1.09604 | 0.474 |
27DAP/reference | 1.00453 | 1 |
39DAP/reference | 1.17221 | 0.211 |
41DAP/reference | 0.85698 | 0.096 |
42DAP/reference | 0.87779 | 0.287 |
43DAP/reference | 0.87729 | 0.095 |
47DAP/reference | 0.62265 | 0.005 |
52DAP/reference | 0.79594 | 0.189 |
57DAP/reference | 0.76983 | 0.024 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.04234 | 0.966 |
26DAP/20DAP | 1.52909 | 0.101 |
34DAP/26DAP | 0.6553 | 0.067 |
51DAP/34DAP | 0.77291 | 0.119 |
52DAP/51DAP | 1.00172 | 1 |
53DAP/52DAP | 1.13218 | 0.753 |
55DAP/53DAP | 0.84189 | 0.404 |
57DAP/55DAP | 1.39168 | 0.185 |
62DAP/57DAP | 0.86135 | 0.871 |
68DAP/62DAP | 0.96431 | 0.834 |
68DAP/14DAP | 0.58364 | |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.8027 | 0.322 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.67336 | 0.174 |
Mature Green Tomato/Ripe Tomato | 3.94045 | 0.016 |
Immature Eggplant/Mature Eggplant | 0.40951 | 0.062 |
Ripe Pepper/Ripe Tomato | 5.13905 | 0.256 |
Mature Eggplant/Ripe Tomato | 2.91136 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.69091 | |
1-1-2/M82 | 1.12794 | 1 |
12-2/M82 | 0.72878 | |
12-4/M82 | 0.89686 | 0.33 |
1-3/M82 | 1.21585 | 0.479 |
2-1-1/M82 | 0.71432 | 0.465 |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.59319 | 0.501 |
3-2/M82 | 2.02013 | |
4-1-1/M82 | 0.91804 | |
4-1/M82 | 1.16649 | |
4-3-2/M82 | 0.96158 | 1 |
4-3/M82 | 0.82381 | 0.441 |
5-3/M82 | 1.72056 | 0.467 |
6-2/M82 | 1.51717 | 0.253 |
6-3/M82 | 1.4643 | 1 |
7-1/M82 | 1.98989 | |
7-2/M82 | 1.15177 | |
9-3-2/M82 | 0.57705 | 0.355 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.11329 | 0.277 |
IL2-6/WTpooled | 0.9941 | 1 |
IL7-5/WTpooled | 1.22237 | 0.792 |
IL7-3/WTpooled | 0.89627 | 0.418 |
IL12-4/WTpooled | 1.02042 | 1 |
IL1-4/WTpooled | 0.95595 | 0.562 |
WT/WTpooled | 1.04479 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.82892 | 0.226 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.98635 | 1 |
DC3000/delta hrp 6h | 1.18069 | 1 |
DC3000/delta hrp 12h | 0.74115 | 1 |
DC3000/delta hrp 24h | 2.07987 | 0.041 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.07215 | 0.384 |
DC3000 delta B/DC3000 delta AB | 0.8804 | 0.223 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.1451 | 1 |
Exp 36h | 0.85375 | 0.749 |
Exp 60h | 0.86704 | 0.664 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | 0.83891 | 0.457 |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.89808 | 0.299 |
transgenic ySAMdc/azygous control (breaker) | 1.263 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.12511 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.97125 | 0.343 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.48808 | 0.231 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.53605 | 0.096 |
Manapal/WT (break) | 0.63667 | 0.333 |
Manapal/WT (red) | 1.18725 | 0.413 |
|
|