Expression of 1-1-6.2.4.15

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.508290.026
27DAP/17DAP0.904570.796
39DAP/27DAP0.946060.67
41DAP/39DAP1.086230.772
42DAP/41DAP0.991061
43DAP/42DAP0.927470.705
47DAP/43DAP0.748450.28
52DAP/47DAP1.036760.916
57DAP/52DAP1.129111

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.81140.006
17DAP/reference0.880110.158
27DAP/reference0.746950.035
39DAP/reference0.799910.051
41DAP/reference0.868020.114
42DAP/reference0.81920.004
43DAP/reference0.75460.042
47DAP/reference0.776540.018
52DAP/reference0.614580.024
57DAP/reference0.803310.02

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.703510.035
27DAP/17DAP0.930920.724
39DAP/27DAP0.905260.105
41DAP/39DAP1.035331
42DAP/41DAP1.096040.795
43DAP/42DAP0.882730.089
47DAP/43DAP1.114420.339
52DAP/47DAP1.048080.844
57DAP/52DAP0.713220.109
57DAP/7DAP0.612051

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.755820.025
17DAP/reference1.150050.199
27DAP/reference1.023970.974
39DAP/reference0.975320.411
41DAP/reference1.200410.027
42DAP/reference1.002820.828
43DAP/reference1.079010.432
47DAP/reference1.122790.514
52DAP/reference0.872890.09
57DAP/reference0.782080.056

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.351930.1
17DAP/reference0.774820.021
27DAP/reference0.854540.181
39DAP/reference0.746140.091
41DAP/reference1.003510.666
42DAP/reference0.863840.027
43DAP/reference0.713010.022
47DAP/reference0.815630.012
52DAP/reference0.692420.007
57DAP/reference0.828070.073

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.497660.019
17DAP/reference1.096040.474
27DAP/reference1.004531
39DAP/reference1.172210.211
41DAP/reference0.856980.096
42DAP/reference0.877790.287
43DAP/reference0.877290.095
47DAP/reference0.622650.005
52DAP/reference0.795940.189
57DAP/reference0.769830.024

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.042340.966
26DAP/20DAP1.529090.101
34DAP/26DAP0.65530.067
51DAP/34DAP0.772910.119
52DAP/51DAP1.001721
53DAP/52DAP1.132180.753
55DAP/53DAP0.841890.404
57DAP/55DAP1.391680.185
62DAP/57DAP0.861350.871
68DAP/62DAP0.964310.834
68DAP/14DAP0.58364

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.80270.322

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.673360.174
Mature Green Tomato/Ripe Tomato3.940450.016
Immature Eggplant/Mature Eggplant0.409510.062
Ripe Pepper/Ripe Tomato5.139050.256
Mature Eggplant/Ripe Tomato2.911360.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.69091
1-1-2/M821.127941
12-2/M820.72878
12-4/M820.896860.33
1-3/M821.215850.479
2-1-1/M820.714320.465
2-1/M82N/AN/A
2-6/M820.593190.501
3-2/M822.02013
4-1-1/M820.91804
4-1/M821.16649
4-3-2/M820.961581
4-3/M820.823810.441
5-3/M821.720560.467
6-2/M821.517170.253
6-3/M821.46431
7-1/M821.98989
7-2/M821.15177
9-3-2/M820.577050.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.113290.277
IL2-6/WTpooled0.99411
IL7-5/WTpooled1.222370.792
IL7-3/WTpooled0.896270.418
IL12-4/WTpooled1.020421
IL1-4/WTpooled0.955950.562
WT/WTpooled1.044791

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.828920.226

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.986351
DC3000/delta hrp 6h1.180691
DC3000/delta hrp 12h0.741151
DC3000/delta hrp 24h2.079870.041

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.072150.384
DC3000 delta B/DC3000 delta AB0.88040.223

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.14511
Exp 36h0.853750.749
Exp 60h0.867040.664

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h0.838910.457
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.898080.299
transgenic ySAMdc/azygous control (breaker)1.2630.248
transgenic ySAMdc/azygous control (red)1.125111

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.971250.343

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.488080.231

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.536050.096
Manapal/WT (break)0.636670.333
Manapal/WT (red)1.187250.413