Expression of 1-1-6.2.4.6
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.89156 | 0.427 |
27DAP/17DAP | 1.12981 | 0.872 |
39DAP/27DAP | 0.67984 | 0.397 |
41DAP/39DAP | 1.43747 | 0.23 |
42DAP/41DAP | 1.17594 | 1 |
43DAP/42DAP | 0.97355 | 0.912 |
47DAP/43DAP | 1.25175 | 0.502 |
52DAP/47DAP | 1.17333 | 0.601 |
57DAP/52DAP | 0.88883 | 0.879 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.93838 | 0.205 |
17DAP/reference | 1.10746 | 0.229 |
27DAP/reference | 1.03903 | 0.66 |
39DAP/reference | 1.10706 | 0.055 |
41DAP/reference | 1.13905 | 0.014 |
42DAP/reference | 1.11799 | 0.022 |
43DAP/reference | 1.06216 | 0.36 |
47DAP/reference | 1.02333 | 0.885 |
52DAP/reference | 0.8133 | 0.102 |
57DAP/reference | 0.94215 | 0.294 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.98385 | 0.75 |
27DAP/17DAP | 0.97692 | 0.887 |
39DAP/27DAP | 1.04718 | 0.751 |
41DAP/39DAP | 1.14837 | 0.896 |
42DAP/41DAP | 1.03502 | 0.934 |
43DAP/42DAP | 1.11597 | 0.382 |
47DAP/43DAP | 1.01598 | 0.973 |
52DAP/47DAP | 0.94365 | 0.797 |
57DAP/52DAP | 0.98116 | 0.75 |
57DAP/7DAP | 1.27826 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.26811 | 0.126 |
17DAP/reference | 0.92537 | 0.253 |
27DAP/reference | 0.88442 | 0.048 |
39DAP/reference | 1.05833 | 0.819 |
41DAP/reference | 1.09461 | 0.26 |
42DAP/reference | 0.94435 | 0.371 |
43DAP/reference | 0.98206 | 0.527 |
47DAP/reference | 1.13337 | 0.337 |
52DAP/reference | 1.1531 | 0.599 |
57DAP/reference | 0.92528 | 0.26 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.01438 | 0.863 |
17DAP/reference | 0.89351 | 0.337 |
27DAP/reference | 1.08036 | 0.38 |
39DAP/reference | 1.0423 | 1 |
41DAP/reference | 0.9446 | 0.268 |
42DAP/reference | 0.97693 | 0.433 |
43DAP/reference | 1.09882 | 0.222 |
47DAP/reference | 1.10809 | 0.042 |
52DAP/reference | 1.15567 | 0.208 |
57DAP/reference | 1.30987 | 0.008 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.14329 | 0.469 |
17DAP/reference | 1.15111 | 0.096 |
27DAP/reference | 0.89826 | 0.195 |
39DAP/reference | 0.95511 | 0.464 |
41DAP/reference | 1.0553 | 0.796 |
42DAP/reference | 0.93725 | 0.445 |
43DAP/reference | 0.83371 | 0.076 |
47DAP/reference | 1.10816 | 0.14 |
52DAP/reference | 0.93963 | 0.529 |
57DAP/reference | 0.83923 | 0.105 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.90652 | 0.807 |
26DAP/20DAP | 0.82174 | 0.317 |
34DAP/26DAP | 0.9846 | 0.988 |
51DAP/34DAP | 1.03011 | 0.898 |
52DAP/51DAP | 1.07223 | 0.722 |
53DAP/52DAP | 1.08501 | 0.678 |
55DAP/53DAP | 1.15661 | 0.071 |
57DAP/55DAP | 0.98777 | 0.911 |
62DAP/57DAP | 6.13833 | 0.622 |
68DAP/62DAP | 0.78284 | 0.505 |
68DAP/14DAP | 0.58699 | 0.121 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.78761 | 0.186 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.48543 | 0.09 |
Mature Green Tomato/Ripe Tomato | 1.5012 | 0.69 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 1.1571 | 1 |
Mature Eggplant/Ripe Tomato | 0.93694 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.95304 | |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.39653 | 1 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.70008 | |
3-2/M82 | 0.99465 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 0.68378 | |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | 1.02199 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | 0.99519 | |
7-2/M82 | 1.216 | |
9-3-2/M82 | 0.73622 | 0.355 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.33914 | 0.358 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.43565 | 0.31 |
IL12-4/WTpooled | 0.55974 | 0.554 |
IL1-4/WTpooled | 0.83175 | |
WT/WTpooled | 0.99433 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.91615 | 0.497 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.94322 | 1 |
DC3000/delta hrp 6h | 1.02565 | 1 |
DC3000/delta hrp 12h | 1.02531 | 1 |
DC3000/delta hrp 24h | 0.83842 | 0.105 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 0.854 | 0.172 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.9052 | 0.328 |
Exp 36h | 0.93778 | 0.699 |
Exp 60h | 0.83368 | 0.32 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | 1.05614 | 0.98 |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.89771 | 0.362 |
transgenic ySAMdc/azygous control (breaker) | 1.016 | 1 |
transgenic ySAMdc/azygous control (red) | 0.97512 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.0415 | 0.037 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.88863 | 0.35 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.96774 | 1 |
Manapal/WT (break) | 0.85911 | 0.333 |
Manapal/WT (red) | 1.1378 | 0.413 |
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