Expression of 1-1-6.2.4.6

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.891560.427
27DAP/17DAP1.129810.872
39DAP/27DAP0.679840.397
41DAP/39DAP1.437470.23
42DAP/41DAP1.175941
43DAP/42DAP0.973550.912
47DAP/43DAP1.251750.502
52DAP/47DAP1.173330.601
57DAP/52DAP0.888830.879

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.938380.205
17DAP/reference1.107460.229
27DAP/reference1.039030.66
39DAP/reference1.107060.055
41DAP/reference1.139050.014
42DAP/reference1.117990.022
43DAP/reference1.062160.36
47DAP/reference1.023330.885
52DAP/reference0.81330.102
57DAP/reference0.942150.294

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.983850.75
27DAP/17DAP0.976920.887
39DAP/27DAP1.047180.751
41DAP/39DAP1.148370.896
42DAP/41DAP1.035020.934
43DAP/42DAP1.115970.382
47DAP/43DAP1.015980.973
52DAP/47DAP0.943650.797
57DAP/52DAP0.981160.75
57DAP/7DAP1.278261

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.268110.126
17DAP/reference0.925370.253
27DAP/reference0.884420.048
39DAP/reference1.058330.819
41DAP/reference1.094610.26
42DAP/reference0.944350.371
43DAP/reference0.982060.527
47DAP/reference1.133370.337
52DAP/reference1.15310.599
57DAP/reference0.925280.26

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.014380.863
17DAP/reference0.893510.337
27DAP/reference1.080360.38
39DAP/reference1.04231
41DAP/reference0.94460.268
42DAP/reference0.976930.433
43DAP/reference1.098820.222
47DAP/reference1.108090.042
52DAP/reference1.155670.208
57DAP/reference1.309870.008

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.143290.469
17DAP/reference1.151110.096
27DAP/reference0.898260.195
39DAP/reference0.955110.464
41DAP/reference1.05530.796
42DAP/reference0.937250.445
43DAP/reference0.833710.076
47DAP/reference1.108160.14
52DAP/reference0.939630.529
57DAP/reference0.839230.105

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.906520.807
26DAP/20DAP0.821740.317
34DAP/26DAP0.98460.988
51DAP/34DAP1.030110.898
52DAP/51DAP1.072230.722
53DAP/52DAP1.085010.678
55DAP/53DAP1.156610.071
57DAP/55DAP0.987770.911
62DAP/57DAP6.138330.622
68DAP/62DAP0.782840.505
68DAP/14DAP0.586990.121

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.787610.186

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.485430.09
Mature Green Tomato/Ripe Tomato1.50120.69
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato1.15711
Mature Eggplant/Ripe Tomato0.936941

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.95304
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M821.396531
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M821.70008
3-2/M820.99465
4-1-1/M82N/AN/A
4-1/M820.68378
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M821.021991
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M820.99519
7-2/M821.216
9-3-2/M820.736220.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.339140.358
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.435650.31
IL12-4/WTpooled0.559740.554
IL1-4/WTpooled0.83175
WT/WTpooled0.994331

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.916150.497

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.943221
DC3000/delta hrp 6h1.025651
DC3000/delta hrp 12h1.025311
DC3000/delta hrp 24h0.838420.105

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB0.8540.172

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.90520.328
Exp 36h0.937780.699
Exp 60h0.833680.32

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h1.056140.98
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.897710.362
transgenic ySAMdc/azygous control (breaker)1.0161
transgenic ySAMdc/azygous control (red)0.975121

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.04150.037

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.888630.35

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.967741
Manapal/WT (break)0.859110.333
Manapal/WT (red)1.13780.413