Expression of 1-1-6.2.6.17

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.029911
27DAP/17DAP1.369440.646
39DAP/27DAP1.307320.539
41DAP/39DAP1.329830.575
42DAP/41DAP1.023811
43DAP/42DAP1.005510.937
47DAP/43DAP1.354780.326
52DAP/47DAP0.943770.803
57DAP/52DAP1.346420.688

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.006130.824
17DAP/reference0.819730.011
27DAP/reference0.972280.642
39DAP/reference1.014780.991
41DAP/reference0.853850.065
42DAP/reference0.96260.188
43DAP/reference1.073310.252
47DAP/reference1.615630.541
52DAP/reference1.456310.019
57DAP/reference1.414950.01

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.316740.067
27DAP/17DAP0.817270.279
39DAP/27DAP1.078030.626
41DAP/39DAP1.032980.827
42DAP/41DAP0.928910.565
43DAP/42DAP0.697090.023
47DAP/43DAP1.171180.444
52DAP/47DAP1.041360.987
57DAP/52DAP1.298360.679
57DAP/7DAP0.846441

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.21040.185
17DAP/reference0.606240.031
27DAP/reference1.117460.974
39DAP/reference1.037111
41DAP/reference0.8840.094
42DAP/reference1.020631
43DAP/reference1.039370.764
47DAP/reference1.090691
52DAP/reference1.09170.636
57DAP/reference1.313170.076

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.950450.532
17DAP/reference0.734120.003
27DAP/reference0.91490.181
39DAP/reference0.688630.015
41DAP/reference0.590020.008
42DAP/reference0.811150.024
43DAP/reference0.741570.027
47DAP/reference0.855010.068
52DAP/reference0.585150.006
57DAP/reference0.732580.021

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.164870.602
17DAP/reference1.281410.814
27DAP/reference0.702630.243
39DAP/reference1.205170.65
41DAP/reference1.520990.134
42DAP/reference1.050640.979
43DAP/reference1.098520.744
47DAP/reference0.846560.014
52DAP/reference1.412630.17
57DAP/reference1.698260.023

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.070240.966
26DAP/20DAP1.021441
34DAP/26DAP1.284750.542
51DAP/34DAP1.90122
52DAP/51DAP1.005891
53DAP/52DAP1.131820.25
55DAP/53DAP1.09180.656
57DAP/55DAP0.919940.652
62DAP/57DAP0.645270.088
68DAP/62DAP1.00470.885
68DAP/14DAP0.9361

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker2.447620.018

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.683240.179
Mature Green Tomato/Ripe Tomato0.696460.086
Immature Eggplant/Mature Eggplant1.385620.051
Ripe Pepper/Ripe Tomato1.363081
Mature Eggplant/Ripe Tomato0.771281

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.94740.934
1-1-2/M821.034931
12-2/M821.184811
12-4/M821.082311
1-3/M822.08889
2-1-1/M820.987960.565
2-1/M820.913920.519
2-6/M820.845540.501
3-2/M821.25991
4-1-1/M821.159961
4-1/M821.232751
4-3-2/M821.084121
4-3/M821.735030.268
5-3/M821.057511
6-2/M821.187441
6-3/M820.840321
7-1/M821.012871
7-2/M821.15227
9-3-2/M821.133881

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.49761
IL2-6/WTpooled0.901780.473
IL7-5/WTpooled0.22095
IL7-3/WTpooled1.103581
IL12-4/WTpooled0.878430.71
IL1-4/WTpooled0.954061
WT/WTpooled0.92551

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.996721

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.94505
DC3000/delta hrp 6h1.213781
DC3000/delta hrp 12h0.98841
DC3000/delta hrp 24h1.126810.535

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB1.371250.477

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.102491
Exp 36h1.089611
Exp 60h1.290370.399

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.94941
Var 0h0.915460.782
Var 12h I row2-row11.189690.506
Var 12h NI row2-row10.923230.627
Var 36h I row2-row11.533240.742
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row11.568151
Var 60h NI row2-row11.120020.691
Time course 0hI-0hNI0.955070.692
Time course 12hI-12hNI0.982310.893
Time course 36hI-36hNI1.066570.453
Time course 60hI-60hNI1.190680.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.753220.32
transgenic ySAMdc/azygous control (breaker)1.056051
transgenic ySAMdc/azygous control (red)0.952841

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.090740.471

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.598570.14
Manapal/WT (break)1.384080.183
Manapal/WT (red)1.104750.413