Expression of 1-1-6.2.6.18

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.093310.798
27DAP/17DAP0.941440.894
39DAP/27DAP1.33520.341
41DAP/39DAP0.845110.394
42DAP/41DAP0.906321
43DAP/42DAP1.251130.587
47DAP/43DAP0.951860.773
52DAP/47DAP1.138480.721
57DAP/52DAP1.244790.886

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.831910.098
17DAP/reference0.981760.737
27DAP/reference0.844870.095
39DAP/reference0.822290.088
41DAP/reference0.999820.814
42DAP/reference0.893880.04
43DAP/reference0.982830.745
47DAP/reference1.599490.028
52DAP/reference1.024220.73
57DAP/reference1.105370.202

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.11440.473
27DAP/17DAP1.064140.754
39DAP/27DAP0.881960.394
41DAP/39DAP1.040520.968
42DAP/41DAP1.162440.593
43DAP/42DAP0.757420.022
47DAP/43DAP0.903420.207
52DAP/47DAP1.176330.508
57DAP/52DAP1.020740.951
57DAP/7DAP0.979341

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.073570.776
17DAP/reference1.050770.269
27DAP/reference0.899820.045
39DAP/reference0.985890.474
41DAP/reference1.096290.291
42DAP/reference0.959650.048
43DAP/reference0.937170.072
47DAP/reference1.026870.996
52DAP/reference1.054790.352
57DAP/reference1.183340.158

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.861160.119
17DAP/reference0.88960.153
27DAP/reference1.034740.875
39DAP/reference1.049660.891
41DAP/reference0.89720.096
42DAP/reference0.928950.289
43DAP/reference0.892030.269
47DAP/reference0.792580.049
52DAP/reference0.910690.203
57DAP/reference0.971350.61

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.902070.035
17DAP/reference0.987610.739
27DAP/reference0.996030.805
39DAP/reference0.947190.299
41DAP/reference0.928910.331
42DAP/reference0.92810.287
43DAP/reference0.918620.305
47DAP/reference0.903170.286
52DAP/reference1.095610.631
57DAP/reference1.178540.064

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.92241
26DAP/20DAP1.497450.1
34DAP/26DAP1.099530.819
51DAP/34DAP0.751840.071
52DAP/51DAP0.91220.151
53DAP/52DAP0.874110.08
55DAP/53DAP0.904140.376
57DAP/55DAP1.38920.898
62DAP/57DAP1.22771
68DAP/62DAP0.817550.722
68DAP/14DAP2.236460.558

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.957370.443

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.042911
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.98628
Mature Eggplant/Ripe Tomato2.66751

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.012991
1-1-2/M821.020231
12-2/M821.012671
12-4/M821.01521
1-3/M821.068621
2-1-1/M821.132140.689
2-1/M821.197481
2-6/M820.980851
3-2/M821.116650.84
4-1-1/M820.935271
4-1/M821.247350.444
4-3-2/M820.776460.698
4-3/M820.997761
5-3/M821.022021
6-2/M820.976681
6-3/M821.005221
7-1/M821.016821
7-2/M821.020651
9-3-2/M820.802760.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.784771
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.21638
IL12-4/WTpooled0.743770.581
IL1-4/WTpooled1.05517
WT/WTpooled0.975491

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.031271

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.967431
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.186741
DC3000/delta hrp 24h1.031770.673

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.214080.045
DC3000 delta B/DC3000 delta AB1.078280.398

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.920450.235
Exp 36h1.613030.693
Exp 60h0.817360.754

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.004991
Var 0h0.99631
Var 12h I row2-row11.313870.296
Var 12h NI row2-row11.133470.34
Var 36h I row2-row11.071391
Var 36h NI row2-row11.071891
Var 60h I row2-row11.292661
Var 60h NI row2-row11.057550.904
Time course 0hI-0hNI0.965690.755
Time course 12hI-12hNI1.115280.409
Time course 36hI-36hNI1.391160.006
Time course 60hI-60hNI1.490480.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.907660.246
transgenic ySAMdc/azygous control (breaker)1.00781
transgenic ySAMdc/azygous control (red)0.935751

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.149320.059

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.910931
Manapal/WT (break)0.974741
Manapal/WT (red)1.374310.137