Expression of 1-1-6.2.6.18
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.09331 | 0.798 |
27DAP/17DAP | 0.94144 | 0.894 |
39DAP/27DAP | 1.3352 | 0.341 |
41DAP/39DAP | 0.84511 | 0.394 |
42DAP/41DAP | 0.90632 | 1 |
43DAP/42DAP | 1.25113 | 0.587 |
47DAP/43DAP | 0.95186 | 0.773 |
52DAP/47DAP | 1.13848 | 0.721 |
57DAP/52DAP | 1.24479 | 0.886 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.83191 | 0.098 |
17DAP/reference | 0.98176 | 0.737 |
27DAP/reference | 0.84487 | 0.095 |
39DAP/reference | 0.82229 | 0.088 |
41DAP/reference | 0.99982 | 0.814 |
42DAP/reference | 0.89388 | 0.04 |
43DAP/reference | 0.98283 | 0.745 |
47DAP/reference | 1.59949 | 0.028 |
52DAP/reference | 1.02422 | 0.73 |
57DAP/reference | 1.10537 | 0.202 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.1144 | 0.473 |
27DAP/17DAP | 1.06414 | 0.754 |
39DAP/27DAP | 0.88196 | 0.394 |
41DAP/39DAP | 1.04052 | 0.968 |
42DAP/41DAP | 1.16244 | 0.593 |
43DAP/42DAP | 0.75742 | 0.022 |
47DAP/43DAP | 0.90342 | 0.207 |
52DAP/47DAP | 1.17633 | 0.508 |
57DAP/52DAP | 1.02074 | 0.951 |
57DAP/7DAP | 0.97934 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.07357 | 0.776 |
17DAP/reference | 1.05077 | 0.269 |
27DAP/reference | 0.89982 | 0.045 |
39DAP/reference | 0.98589 | 0.474 |
41DAP/reference | 1.09629 | 0.291 |
42DAP/reference | 0.95965 | 0.048 |
43DAP/reference | 0.93717 | 0.072 |
47DAP/reference | 1.02687 | 0.996 |
52DAP/reference | 1.05479 | 0.352 |
57DAP/reference | 1.18334 | 0.158 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.86116 | 0.119 |
17DAP/reference | 0.8896 | 0.153 |
27DAP/reference | 1.03474 | 0.875 |
39DAP/reference | 1.04966 | 0.891 |
41DAP/reference | 0.8972 | 0.096 |
42DAP/reference | 0.92895 | 0.289 |
43DAP/reference | 0.89203 | 0.269 |
47DAP/reference | 0.79258 | 0.049 |
52DAP/reference | 0.91069 | 0.203 |
57DAP/reference | 0.97135 | 0.61 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.90207 | 0.035 |
17DAP/reference | 0.98761 | 0.739 |
27DAP/reference | 0.99603 | 0.805 |
39DAP/reference | 0.94719 | 0.299 |
41DAP/reference | 0.92891 | 0.331 |
42DAP/reference | 0.9281 | 0.287 |
43DAP/reference | 0.91862 | 0.305 |
47DAP/reference | 0.90317 | 0.286 |
52DAP/reference | 1.09561 | 0.631 |
57DAP/reference | 1.17854 | 0.064 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.9224 | 1 |
26DAP/20DAP | 1.49745 | 0.1 |
34DAP/26DAP | 1.09953 | 0.819 |
51DAP/34DAP | 0.75184 | 0.071 |
52DAP/51DAP | 0.9122 | 0.151 |
53DAP/52DAP | 0.87411 | 0.08 |
55DAP/53DAP | 0.90414 | 0.376 |
57DAP/55DAP | 1.3892 | 0.898 |
62DAP/57DAP | 1.22771 | |
68DAP/62DAP | 0.81755 | 0.722 |
68DAP/14DAP | 2.23646 | 0.558 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.95737 | 0.443 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.04291 | 1 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.98628 | |
Mature Eggplant/Ripe Tomato | 2.66751 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.01299 | 1 |
1-1-2/M82 | 1.02023 | 1 |
12-2/M82 | 1.01267 | 1 |
12-4/M82 | 1.0152 | 1 |
1-3/M82 | 1.06862 | 1 |
2-1-1/M82 | 1.13214 | 0.689 |
2-1/M82 | 1.19748 | 1 |
2-6/M82 | 0.98085 | 1 |
3-2/M82 | 1.11665 | 0.84 |
4-1-1/M82 | 0.93527 | 1 |
4-1/M82 | 1.24735 | 0.444 |
4-3-2/M82 | 0.77646 | 0.698 |
4-3/M82 | 0.99776 | 1 |
5-3/M82 | 1.02202 | 1 |
6-2/M82 | 0.97668 | 1 |
6-3/M82 | 1.00522 | 1 |
7-1/M82 | 1.01682 | 1 |
7-2/M82 | 1.02065 | 1 |
9-3-2/M82 | 0.80276 | 0.355 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.78477 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.21638 | |
IL12-4/WTpooled | 0.74377 | 0.581 |
IL1-4/WTpooled | 1.05517 | |
WT/WTpooled | 0.97549 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.03127 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.96743 | 1 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 1.18674 | 1 |
DC3000/delta hrp 24h | 1.03177 | 0.673 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.21408 | 0.045 |
DC3000 delta B/DC3000 delta AB | 1.07828 | 0.398 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.92045 | 0.235 |
Exp 36h | 1.61303 | 0.693 |
Exp 60h | 0.81736 | 0.754 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00499 | 1 |
Var 0h | 0.9963 | 1 |
Var 12h I row2-row1 | 1.31387 | 0.296 |
Var 12h NI row2-row1 | 1.13347 | 0.34 |
Var 36h I row2-row1 | 1.07139 | 1 |
Var 36h NI row2-row1 | 1.07189 | 1 |
Var 60h I row2-row1 | 1.29266 | 1 |
Var 60h NI row2-row1 | 1.05755 | 0.904 |
Time course 0hI-0hNI | 0.96569 | 0.755 |
Time course 12hI-12hNI | 1.11528 | 0.409 |
Time course 36hI-36hNI | 1.39116 | 0.006 |
Time course 60hI-60hNI | 1.49048 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.90766 | 0.246 |
transgenic ySAMdc/azygous control (breaker) | 1.0078 | 1 |
transgenic ySAMdc/azygous control (red) | 0.93575 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.14932 | 0.059 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | N/A | N/A |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.91093 | 1 |
Manapal/WT (break) | 0.97474 | 1 |
Manapal/WT (red) | 1.37431 | 0.137 |
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