Tomato Functional Genomics Database (TFGD)

Expression of 1-1-6.2.6.5

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.05782	0.893
27DAP/17DAP	0.92972	0.8
39DAP/27DAP	2.44254	0.062
41DAP/39DAP	0.80507	0.296
42DAP/41DAP	0.98921	1
43DAP/42DAP	1.26681	0.475
47DAP/43DAP	0.53143	0.065
52DAP/47DAP	1.66585	0.446
57DAP/52DAP	1.60131	0.983

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.93853	0.246
17DAP/reference	1.21547	0.029
27DAP/reference	1.08815	0.156
39DAP/reference	1.23134	0.106
41DAP/reference	1.14258	0.043
42DAP/reference	1.03729	0.414
43DAP/reference	1.11691	0.189
47DAP/reference	1.10669	0.254
52DAP/reference	0.97915	0.504
57DAP/reference	0.9967	0.736

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.88017	0.415
27DAP/17DAP	1.20843	0.411
39DAP/27DAP	1.09687	0.581
41DAP/39DAP	0.7971	0.038
42DAP/41DAP	1.17205	0.74
43DAP/42DAP	0.98275	0.854
47DAP/43DAP	1.05267	0.92
52DAP/47DAP	0.96442	0.814
57DAP/52DAP	1.21322	0.632
57DAP/7DAP	1.28375	1

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.93568	0.296
17DAP/reference	0.73652	0.039
27DAP/reference	0.86381	0.231
39DAP/reference	0.99701	0.64
41DAP/reference	1.05031	1
42DAP/reference	1.00439	0.791
43DAP/reference	0.76074	0.151
47DAP/reference	1.51582	0.042
52DAP/reference	1.13512	0.428
57DAP/reference	1.16546	0.147

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.06658	0.852
17DAP/reference	0.98004	0.576
27DAP/reference	0.97765	0.554
39DAP/reference	0.91535	0.306
41DAP/reference	0.88166	0.048
42DAP/reference	0.9278	0.237
43DAP/reference	0.99745	0.748
47DAP/reference	1.0495	0.621
52DAP/reference	0.967	0.537
57DAP/reference	1.13301	0.508

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.0471	0.939
17DAP/reference	0.91833	0.592
27DAP/reference	1.37045
39DAP/reference	1.13114	0.528
41DAP/reference	1.36051	0.139
42DAP/reference	1.06916	0.907
43DAP/reference	0.92903	0.365
47DAP/reference	0.93524	0.335
52DAP/reference	0.78648	0.351
57DAP/reference	0.96658	0.491

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	1.06614	1
26DAP/20DAP	0.83765	1
34DAP/26DAP	1.11255	1
51DAP/34DAP	1.53247	0.04
52DAP/51DAP	1.22571	0.142
53DAP/52DAP	1.13942	0.58
55DAP/53DAP	1.00867	1
57DAP/55DAP	0.88784	0.629
62DAP/57DAP	2.32696	0.002
68DAP/62DAP	8.67874	0.23
68DAP/14DAP	27.0121	0.026

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	0.98602	0.322

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	1.22063	0.399
Immature Eggplant/Mature Eggplant	1.42778	0.062
Ripe Pepper/Ripe Tomato	1.40684	1
Mature Eggplant/Ripe Tomato	0.89042	1

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	N/A	N/A
1-1-2/M82	N/A	N/A
12-2/M82	N/A	N/A
12-4/M82	1.13231	1
1-3/M82	N/A	N/A
2-1-1/M82	1.06451
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	N/A	N/A
4-1-1/M82	N/A	N/A
4-1/M82	0.8182	0.727
4-3-2/M82	0.81752
4-3/M82	1.15286
5-3/M82	1.06823	1
6-2/M82	N/A	N/A
6-3/M82	0.98485
7-1/M82	0.82697
7-2/M82	N/A	N/A
9-3-2/M82	1.02915	1

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	1.05369	1
IL2-6/WTpooled	1.24072	0.531
IL7-5/WTpooled	1.72675	0.67
IL7-3/WTpooled	1.31901	0.362
IL12-4/WTpooled	1.25285	0.531
IL1-4/WTpooled	0.93196	0.834
WT/WTpooled	0.95295	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	0.91426	0.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	0.98289
DC3000/delta hrp 6h	1.20444	1
DC3000/delta hrp 12h	1.08131	1
DC3000/delta hrp 24h	0.65291

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	0.84762	0.052
DC3000 delta B/DC3000 delta AB	0.79457	0.025

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	0.99209	1
Exp 36h	1.63335	0.693
Exp 60h	1.20507	1

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	1.01433	1
Var 0h	0.66447	0.933
Var 12h I row2-row1	0.97888	0.856
Var 12h NI row2-row1	1.06653	1
Var 36h I row2-row1	0.941	1
Var 36h NI row2-row1	1.38645	0.276
Var 60h I row2-row1	1.02369	1
Var 60h NI row2-row1	1.10988	1
Time course 0hI-0hNI	0.97486	0.917
Time course 12hI-12hNI	0.93947	0.53
Time course 36hI-36hNI	0.82158	0.096
Time course 60hI-60hNI	0.23866	0.005

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	1.10408	0.511
transgenic ySAMdc/azygous control (breaker)	1.59206	0.178
transgenic ySAMdc/azygous control (red)	0.95558	1

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	1.06901	0.035

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	0.81627	0.284

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	1.1074	1
Manapal/WT (break)	1.43655	1
Manapal/WT (red)	2.2077	0.222