Expression of 1-1-6.2.9.1

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.912020.496
27DAP/17DAP0.671640.068
39DAP/27DAP0.980420.749
41DAP/39DAP1.247230.504
42DAP/41DAP1.229280.614
43DAP/42DAP1.10.976
47DAP/43DAP0.834790.487
52DAP/47DAP1.000520.938
57DAP/52DAP1.021831

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.518590.011
17DAP/reference1.271490.059
27DAP/reference1.15290.232
39DAP/reference0.957420.575
41DAP/reference1.000991
42DAP/reference0.946190.169
43DAP/reference0.993880.861
47DAP/reference0.853390.027
52DAP/reference0.863530.215
57DAP/reference0.957960.34

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.988530.763
27DAP/17DAP0.981330.919
39DAP/27DAP0.754090.062
41DAP/39DAP0.953010.885
42DAP/41DAP1.058061
43DAP/42DAP1.026670.627
47DAP/43DAP0.941980.647
52DAP/47DAP1.09580.63
57DAP/52DAP1.048640.877
57DAP/7DAP0.799181

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.080830.325
17DAP/reference0.983630.518
27DAP/reference0.907360.101
39DAP/reference1.025281
41DAP/reference0.779630.042
42DAP/reference0.90620.169
43DAP/reference0.884050.082
47DAP/reference0.85230.168
52DAP/reference0.922740.179
57DAP/reference0.760490.01

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.219530.114
17DAP/reference1.369650.181
27DAP/reference0.950470.327
39DAP/reference0.888390.055
41DAP/reference0.895330.108
42DAP/reference0.998680.723
43DAP/reference1.199140.327
47DAP/reference0.89410.083
52DAP/reference0.882680.171
57DAP/reference0.782810.085

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.199180.037
17DAP/reference1.144860.166
27DAP/reference1.089250.298
39DAP/reference1.02430.67
41DAP/reference0.947360.417
42DAP/reference0.909230.445
43DAP/reference0.881440.197
47DAP/reference0.889080.335
52DAP/reference0.949740.582
57DAP/reference0.990690.682

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.148840.966
26DAP/20DAP1.024051
34DAP/26DAP1.016481
51DAP/34DAP1.159990.666
52DAP/51DAP0.867070.151
53DAP/52DAP0.756110.173
55DAP/53DAP1.061990.366
57DAP/55DAP1.109870.986
62DAP/57DAP0.930670.994
68DAP/62DAP1.047921
68DAP/14DAP1.25122

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.446670.068

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato2.60240.07
Immature Eggplant/Mature Eggplant0.36037
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe Tomato0.925641

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.567140.5
1-1-2/M821.359371
12-2/M820.900790.955
12-4/M821.008821
1-3/M821.270560.248
2-1-1/M820.978911
2-1/M820.58716
2-6/M821.348570.374
3-2/M821.25753
4-1-1/M821.353991
4-1/M821.138371
4-3-2/M821.464750.284
4-3/M821.36921
5-3/M821.023251
6-2/M821.264470.253
6-3/M821.027691
7-1/M821.064460.598
7-2/M821.107781
9-3-2/M821.665471

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.678510.321
IL2-6/WTpooled1.220250.584
IL7-5/WTpooled0.925521
IL7-3/WTpooled0.823470.418
IL12-4/WTpooled1.009550.891
IL1-4/WTpooled1.083180.421
WT/WTpooled1.007730.89

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.829760.341

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.865981
DC3000/delta hrp 6h1.083771
DC3000/delta hrp 12h1.044131
DC3000/delta hrp 24h0.832590.246

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.705010.036
DC3000 delta B/DC3000 delta AB0.755640.023

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.869781
Exp 36h0.604060.456
Exp 60h0.576210.249

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.022571
Var 0h1.113560.782
Var 12h I row2-row10.792930.338
Var 12h NI row2-row10.978670.906
Var 36h I row2-row11.125190.742
Var 36h NI row2-row11.020891
Var 60h I row2-row11.198090.562
Var 60h NI row2-row10.923340.866
Time course 0hI-0hNI0.963140.745
Time course 12hI-12hNI0.996091
Time course 36hI-36hNI1.004991
Time course 60hI-60hNI0.446750.005

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.118440.287
transgenic ySAMdc/azygous control (breaker)1.415220.248
transgenic ySAMdc/azygous control (red)1.396480.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.896930.038

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt2.892110.239

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)2.938810.086
Manapal/WT (break)2.254830.126
Manapal/WT (red)2.047280.137