Expression of 1-1-6.2.9.1
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.91202 | 0.496 |
27DAP/17DAP | 0.67164 | 0.068 |
39DAP/27DAP | 0.98042 | 0.749 |
41DAP/39DAP | 1.24723 | 0.504 |
42DAP/41DAP | 1.22928 | 0.614 |
43DAP/42DAP | 1.1 | 0.976 |
47DAP/43DAP | 0.83479 | 0.487 |
52DAP/47DAP | 1.00052 | 0.938 |
57DAP/52DAP | 1.02183 | 1 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.51859 | 0.011 |
17DAP/reference | 1.27149 | 0.059 |
27DAP/reference | 1.1529 | 0.232 |
39DAP/reference | 0.95742 | 0.575 |
41DAP/reference | 1.00099 | 1 |
42DAP/reference | 0.94619 | 0.169 |
43DAP/reference | 0.99388 | 0.861 |
47DAP/reference | 0.85339 | 0.027 |
52DAP/reference | 0.86353 | 0.215 |
57DAP/reference | 0.95796 | 0.34 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.98853 | 0.763 |
27DAP/17DAP | 0.98133 | 0.919 |
39DAP/27DAP | 0.75409 | 0.062 |
41DAP/39DAP | 0.95301 | 0.885 |
42DAP/41DAP | 1.05806 | 1 |
43DAP/42DAP | 1.02667 | 0.627 |
47DAP/43DAP | 0.94198 | 0.647 |
52DAP/47DAP | 1.0958 | 0.63 |
57DAP/52DAP | 1.04864 | 0.877 |
57DAP/7DAP | 0.79918 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.08083 | 0.325 |
17DAP/reference | 0.98363 | 0.518 |
27DAP/reference | 0.90736 | 0.101 |
39DAP/reference | 1.02528 | 1 |
41DAP/reference | 0.77963 | 0.042 |
42DAP/reference | 0.9062 | 0.169 |
43DAP/reference | 0.88405 | 0.082 |
47DAP/reference | 0.8523 | 0.168 |
52DAP/reference | 0.92274 | 0.179 |
57DAP/reference | 0.76049 | 0.01 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.21953 | 0.114 |
17DAP/reference | 1.36965 | 0.181 |
27DAP/reference | 0.95047 | 0.327 |
39DAP/reference | 0.88839 | 0.055 |
41DAP/reference | 0.89533 | 0.108 |
42DAP/reference | 0.99868 | 0.723 |
43DAP/reference | 1.19914 | 0.327 |
47DAP/reference | 0.8941 | 0.083 |
52DAP/reference | 0.88268 | 0.171 |
57DAP/reference | 0.78281 | 0.085 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.19918 | 0.037 |
17DAP/reference | 1.14486 | 0.166 |
27DAP/reference | 1.08925 | 0.298 |
39DAP/reference | 1.0243 | 0.67 |
41DAP/reference | 0.94736 | 0.417 |
42DAP/reference | 0.90923 | 0.445 |
43DAP/reference | 0.88144 | 0.197 |
47DAP/reference | 0.88908 | 0.335 |
52DAP/reference | 0.94974 | 0.582 |
57DAP/reference | 0.99069 | 0.682 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.14884 | 0.966 |
26DAP/20DAP | 1.02405 | 1 |
34DAP/26DAP | 1.01648 | 1 |
51DAP/34DAP | 1.15999 | 0.666 |
52DAP/51DAP | 0.86707 | 0.151 |
53DAP/52DAP | 0.75611 | 0.173 |
55DAP/53DAP | 1.06199 | 0.366 |
57DAP/55DAP | 1.10987 | 0.986 |
62DAP/57DAP | 0.93067 | 0.994 |
68DAP/62DAP | 1.04792 | 1 |
68DAP/14DAP | 1.25122 | |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.44667 | 0.068 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 2.6024 | 0.07 |
Immature Eggplant/Mature Eggplant | 0.36037 | |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | 0.92564 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.56714 | 0.5 |
1-1-2/M82 | 1.35937 | 1 |
12-2/M82 | 0.90079 | 0.955 |
12-4/M82 | 1.00882 | 1 |
1-3/M82 | 1.27056 | 0.248 |
2-1-1/M82 | 0.97891 | 1 |
2-1/M82 | 0.58716 | |
2-6/M82 | 1.34857 | 0.374 |
3-2/M82 | 1.25753 | |
4-1-1/M82 | 1.35399 | 1 |
4-1/M82 | 1.13837 | 1 |
4-3-2/M82 | 1.46475 | 0.284 |
4-3/M82 | 1.3692 | 1 |
5-3/M82 | 1.02325 | 1 |
6-2/M82 | 1.26447 | 0.253 |
6-3/M82 | 1.02769 | 1 |
7-1/M82 | 1.06446 | 0.598 |
7-2/M82 | 1.10778 | 1 |
9-3-2/M82 | 1.66547 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.67851 | 0.321 |
IL2-6/WTpooled | 1.22025 | 0.584 |
IL7-5/WTpooled | 0.92552 | 1 |
IL7-3/WTpooled | 0.82347 | 0.418 |
IL12-4/WTpooled | 1.00955 | 0.891 |
IL1-4/WTpooled | 1.08318 | 0.421 |
WT/WTpooled | 1.00773 | 0.89 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.82976 | 0.341 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.86598 | 1 |
DC3000/delta hrp 6h | 1.08377 | 1 |
DC3000/delta hrp 12h | 1.04413 | 1 |
DC3000/delta hrp 24h | 0.83259 | 0.246 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.70501 | 0.036 |
DC3000 delta B/DC3000 delta AB | 0.75564 | 0.023 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.86978 | 1 |
Exp 36h | 0.60406 | 0.456 |
Exp 60h | 0.57621 | 0.249 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.02257 | 1 |
Var 0h | 1.11356 | 0.782 |
Var 12h I row2-row1 | 0.79293 | 0.338 |
Var 12h NI row2-row1 | 0.97867 | 0.906 |
Var 36h I row2-row1 | 1.12519 | 0.742 |
Var 36h NI row2-row1 | 1.02089 | 1 |
Var 60h I row2-row1 | 1.19809 | 0.562 |
Var 60h NI row2-row1 | 0.92334 | 0.866 |
Time course 0hI-0hNI | 0.96314 | 0.745 |
Time course 12hI-12hNI | 0.99609 | 1 |
Time course 36hI-36hNI | 1.00499 | 1 |
Time course 60hI-60hNI | 0.44675 | 0.005 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.11844 | 0.287 |
transgenic ySAMdc/azygous control (breaker) | 1.41522 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.39648 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.89693 | 0.038 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 2.89211 | 0.239 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 2.93881 | 0.086 |
Manapal/WT (break) | 2.25483 | 0.126 |
Manapal/WT (red) | 2.04728 | 0.137 |
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