Expression of 1-1-6.2.9.20
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.79303 | 0.221 |
27DAP/17DAP | 0.82735 | 0.606 |
39DAP/27DAP | 1.10286 | 0.83 |
41DAP/39DAP | 0.76374 | 0.362 |
42DAP/41DAP | 2.07538 | 0.262 |
43DAP/42DAP | 1.36353 | 0.772 |
47DAP/43DAP | 0.85719 | 0.51 |
52DAP/47DAP | 0.93793 | 0.789 |
57DAP/52DAP | 1.42344 | 0.737 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.83696 | 0.154 |
17DAP/reference | 0.96265 | 0.567 |
27DAP/reference | 0.84496 | 0.141 |
39DAP/reference | 1.06216 | 0.857 |
41DAP/reference | 0.87251 | 0.341 |
42DAP/reference | 1.05676 | 0.384 |
43DAP/reference | 0.99523 | 0.861 |
47DAP/reference | 0.80653 | 0.015 |
52DAP/reference | 0.85471 | 0.042 |
57DAP/reference | 0.95381 | 0.308 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.21406 | 0.91 |
27DAP/17DAP | 0.98437 | 0.943 |
39DAP/27DAP | 0.86674 | 0.4 |
41DAP/39DAP | 0.82155 | 0.567 |
42DAP/41DAP | 1.07626 | 1 |
43DAP/42DAP | 1.04266 | 0.699 |
47DAP/43DAP | 0.88646 | 0.588 |
52DAP/47DAP | 1.32081 | 0.444 |
57DAP/52DAP | 0.71735 | |
57DAP/7DAP | 1.49504 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.77937 | 0.062 |
17DAP/reference | 0.82281 | 0.024 |
27DAP/reference | 0.76981 | 0.011 |
39DAP/reference | 0.78698 | 0.011 |
41DAP/reference | 0.7382 | 0.023 |
42DAP/reference | 0.64313 | 0.01 |
43DAP/reference | 0.58115 | 0.012 |
47DAP/reference | 0.70506 | 0.128 |
52DAP/reference | 0.59418 | 0.012 |
57DAP/reference | 0.74188 | 0.064 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.09916 | 0.863 |
17DAP/reference | 1.25967 | 0.924 |
27DAP/reference | 0.90231 | 0.123 |
39DAP/reference | 0.93215 | 0.322 |
41DAP/reference | 0.81913 | 0.042 |
42DAP/reference | 0.89413 | 0.135 |
43DAP/reference | 0.97838 | 0.633 |
47DAP/reference | 0.8337 | 0.03 |
52DAP/reference | 1.00895 | 1 |
57DAP/reference | 0.97679 | 0.61 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.83417 | 0.047 |
17DAP/reference | 0.92078 | 0.262 |
27DAP/reference | 0.7984 | 0.025 |
39DAP/reference | 0.81024 | 0.023 |
41DAP/reference | 0.85262 | 0.037 |
42DAP/reference | 0.79153 | 0.018 |
43DAP/reference | 0.84046 | 0.125 |
47DAP/reference | 0.87322 | 0.168 |
52DAP/reference | 0.90016 | 0.424 |
57DAP/reference | 0.97143 | 0.553 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.28196 | 0.916 |
26DAP/20DAP | 1.29242 | 0.477 |
34DAP/26DAP | 0.99854 | 1 |
51DAP/34DAP | 0.86724 | 0.394 |
52DAP/51DAP | 0.96392 | 1 |
53DAP/52DAP | 1.13788 | 0.783 |
55DAP/53DAP | 1.04534 | 0.964 |
57DAP/55DAP | 0.98721 | 0.923 |
62DAP/57DAP | 1.07 | 0.393 |
68DAP/62DAP | 0.82578 | 0.543 |
68DAP/14DAP | 1.36317 | 0.051 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.87572 | 0.224 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.94501 | 0.648 |
Mature Green Tomato/Ripe Tomato | 1.16769 | |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 13.3748 | |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 0.90278 | |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.95992 | 1 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | 0.84189 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | 0.96726 | |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.24875 | 0.659 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.65721 | 0.362 |
IL12-4/WTpooled | 1.92291 | 0.522 |
IL1-4/WTpooled | 1.00305 | |
WT/WTpooled | 0.94579 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.80083 | 0.75 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.13056 | 0.921 |
DC3000/delta hrp 6h | 0.48359 | |
DC3000/delta hrp 12h | 0.99502 | 1 |
DC3000/delta hrp 24h | 0.93521 | 0.654 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.11709 | 1 |
Var 0h | 1.1197 | 0.782 |
Var 12h I row2-row1 | 1.16556 | 0.654 |
Var 12h NI row2-row1 | 1.01571 | 1 |
Var 36h I row2-row1 | 0.43492 | 1 |
Var 36h NI row2-row1 | 0.76228 | 0.645 |
Var 60h I row2-row1 | 1.06254 | 1 |
Var 60h NI row2-row1 | 0.95526 | 1 |
Time course 0hI-0hNI | 0.77803 | 0.233 |
Time course 12hI-12hNI | 1.98949 | 0.467 |
Time course 36hI-36hNI | 0.88697 | 0.206 |
Time course 60hI-60hNI | 0.67053 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.0864 | 0.748 |
transgenic ySAMdc/azygous control (breaker) | 1.26074 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.381 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.92191 | 0.058 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.66398 | 0.241 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.11902 | 1 |
Manapal/WT (break) | 1.11552 | 1 |
Manapal/WT (red) | 1.3945 | 0.222 |
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