Expression of 1-1-6.3.1.10
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.2061 | 0.394 |
27DAP/17DAP | 0.92753 | 0.801 |
39DAP/27DAP | 1.68399 | 0.034 |
41DAP/39DAP | 0.69473 | 0.082 |
42DAP/41DAP | 2.61754 | 0.032 |
43DAP/42DAP | 1.55921 | 0.501 |
47DAP/43DAP | 3.11509 | 0.156 |
52DAP/47DAP | 0.4664 | 0.033 |
57DAP/52DAP | 1.03011 | 0.983 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.62254 | 0.024 |
17DAP/reference | 0.70901 | 0.065 |
27DAP/reference | 0.74828 | 0.061 |
39DAP/reference | 0.82653 | 0.121 |
41DAP/reference | 0.58411 | 0.026 |
42DAP/reference | 1.1946 | 0.108 |
43DAP/reference | 1.94706 | 0.023 |
47DAP/reference | 2.63239 | 0.001 |
52DAP/reference | 1.51331 | 0.035 |
57DAP/reference | 1.3632 | 0.031 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.40756 | 0.036 |
27DAP/17DAP | 0.74048 | 0.151 |
39DAP/27DAP | 1.43228 | 0.062 |
41DAP/39DAP | 0.82658 | 0.321 |
42DAP/41DAP | 1.28588 | 0.015 |
43DAP/42DAP | 1.86907 | 0.013 |
47DAP/43DAP | 1.2749 | 0.026 |
52DAP/47DAP | 0.70191 | 0.105 |
57DAP/52DAP | 0.7533 | 0.256 |
57DAP/7DAP | 0.94753 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.08556 | 0.625 |
17DAP/reference | 0.95912 | 0.447 |
27DAP/reference | 1.03288 | 0.551 |
39DAP/reference | 1.18552 | 0.03 |
41DAP/reference | 1.13837 | 0.475 |
42DAP/reference | 1.19942 | 0.059 |
43DAP/reference | 1.2297 | 0.006 |
47DAP/reference | 1.26819 | 0.071 |
52DAP/reference | 1.69796 | 0.007 |
57DAP/reference | 1.37542 | 0.07 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.67841 | 0.008 |
17DAP/reference | 0.79371 | 0.013 |
27DAP/reference | 0.96881 | 0.483 |
39DAP/reference | 0.9107 | 0.105 |
41DAP/reference | 0.90209 | 0.083 |
42DAP/reference | 0.93524 | 0.237 |
43DAP/reference | 0.99775 | 0.569 |
47DAP/reference | 1.08563 | 0.366 |
52DAP/reference | 0.69893 | 0.005 |
57DAP/reference | 0.85708 | 0.194 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.03324 | 0.963 |
17DAP/reference | 0.83237 | 0.125 |
27DAP/reference | 0.91732 | 0.319 |
39DAP/reference | 0.87386 | 0.083 |
41DAP/reference | 0.96782 | 0.512 |
42DAP/reference | 1.25587 | 0.063 |
43DAP/reference | 1.44473 | 0.031 |
47DAP/reference | 2.41679 | 0.005 |
52DAP/reference | 1.8453 | 0.102 |
57DAP/reference | 1.15646 | 0.144 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.97884 | 1 |
26DAP/20DAP | 0.98825 | 1 |
34DAP/26DAP | 0.87174 | 0.653 |
51DAP/34DAP | 0.98771 | 0.883 |
52DAP/51DAP | 0.94569 | 1 |
53DAP/52DAP | 0.94882 | 0.824 |
55DAP/53DAP | 1.1809 | 0.755 |
57DAP/55DAP | 1.3058 | 0.274 |
62DAP/57DAP | 0.53849 | 0.088 |
68DAP/62DAP | 1.12878 | 0.831 |
68DAP/14DAP | 0.95615 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 3.22629 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.98048 | 0.765 |
Mature Green Tomato/Ripe Tomato | 0.44283 | 0.038 |
Immature Eggplant/Mature Eggplant | 1.59057 | 0.05 |
Ripe Pepper/Ripe Tomato | 0.53628 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.21295 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.96038 | 0.486 |
1-1-2/M82 | 1.00579 | 1 |
12-2/M82 | 0.93308 | 0.955 |
12-4/M82 | 1.30325 | 1 |
1-3/M82 | 2.00404 | 0.277 |
2-1-1/M82 | 1.09664 | 1 |
2-1/M82 | 0.98683 | 1 |
2-6/M82 | 1.00448 | 1 |
3-2/M82 | 1.01952 | 1 |
4-1-1/M82 | 1.00978 | 1 |
4-1/M82 | 1.83802 | 0.853 |
4-3-2/M82 | 1.36596 | 0.241 |
4-3/M82 | 0.94004 | 0.72 |
5-3/M82 | 0.95233 | 1 |
6-2/M82 | 0.98576 | 1 |
6-3/M82 | 1.35837 | 1 |
7-1/M82 | 1.0087 | 1 |
7-2/M82 | 0.87025 | 0.565 |
9-3-2/M82 | 1.5952 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.48416 | 0.277 |
IL2-6/WTpooled | 1.63697 | 0.415 |
IL7-5/WTpooled | 1.01486 | 1 |
IL7-3/WTpooled | 1.1906 | 1 |
IL12-4/WTpooled | 1.8229 | 0.532 |
IL1-4/WTpooled | 1.36026 | 1 |
WT/WTpooled | 1.00783 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.41738 | 0.699 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.09422 | 0.758 |
DC3000/delta hrp 6h | 1.0237 | 1 |
DC3000/delta hrp 12h | 1.00738 | 1 |
DC3000/delta hrp 24h | 1.2117 | 0.483 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.06758 | 0.094 |
DC3000 delta B/DC3000 delta AB | 1.31842 | 0.208 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.406 | 0.254 |
Exp 36h | 1.01604 | 1 |
Exp 60h | 1.16335 | 0.399 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.9992 | 1 |
Var 0h | 0.89798 | 0.933 |
Var 12h I row2-row1 | 0.99002 | 1 |
Var 12h NI row2-row1 | 1.10076 | 0.649 |
Var 36h I row2-row1 | 1.5141 | 0.309 |
Var 36h NI row2-row1 | 0.8187 | 0.61 |
Var 60h I row2-row1 | 0.80853 | 0.582 |
Var 60h NI row2-row1 | 0.95674 | 1 |
Time course 0hI-0hNI | 1.01753 | 0.852 |
Time course 12hI-12hNI | 0.87903 | 0.228 |
Time course 36hI-36hNI | 1.11262 | 0.248 |
Time course 60hI-60hNI | 3.02846 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.83589 | 0.286 |
transgenic ySAMdc/azygous control (breaker) | 0.83058 | 0.251 |
transgenic ySAMdc/azygous control (red) | 1.24559 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.6815 | 0.035 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.88968 | 0.284 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.6632 | 0.105 |
Manapal/WT (break) | 1.37158 | 1 |
Manapal/WT (red) | 0.46123 | 0.188 |
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