Expression of 1-1-6.3.1.10

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.20610.394
27DAP/17DAP0.927530.801
39DAP/27DAP1.683990.034
41DAP/39DAP0.694730.082
42DAP/41DAP2.617540.032
43DAP/42DAP1.559210.501
47DAP/43DAP3.115090.156
52DAP/47DAP0.46640.033
57DAP/52DAP1.030110.983

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.622540.024
17DAP/reference0.709010.065
27DAP/reference0.748280.061
39DAP/reference0.826530.121
41DAP/reference0.584110.026
42DAP/reference1.19460.108
43DAP/reference1.947060.023
47DAP/reference2.632390.001
52DAP/reference1.513310.035
57DAP/reference1.36320.031

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.407560.036
27DAP/17DAP0.740480.151
39DAP/27DAP1.432280.062
41DAP/39DAP0.826580.321
42DAP/41DAP1.285880.015
43DAP/42DAP1.869070.013
47DAP/43DAP1.27490.026
52DAP/47DAP0.701910.105
57DAP/52DAP0.75330.256
57DAP/7DAP0.947531

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.085560.625
17DAP/reference0.959120.447
27DAP/reference1.032880.551
39DAP/reference1.185520.03
41DAP/reference1.138370.475
42DAP/reference1.199420.059
43DAP/reference1.22970.006
47DAP/reference1.268190.071
52DAP/reference1.697960.007
57DAP/reference1.375420.07

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.678410.008
17DAP/reference0.793710.013
27DAP/reference0.968810.483
39DAP/reference0.91070.105
41DAP/reference0.902090.083
42DAP/reference0.935240.237
43DAP/reference0.997750.569
47DAP/reference1.085630.366
52DAP/reference0.698930.005
57DAP/reference0.857080.194

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.033240.963
17DAP/reference0.832370.125
27DAP/reference0.917320.319
39DAP/reference0.873860.083
41DAP/reference0.967820.512
42DAP/reference1.255870.063
43DAP/reference1.444730.031
47DAP/reference2.416790.005
52DAP/reference1.84530.102
57DAP/reference1.156460.144

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.978841
26DAP/20DAP0.988251
34DAP/26DAP0.871740.653
51DAP/34DAP0.987710.883
52DAP/51DAP0.945691
53DAP/52DAP0.948820.824
55DAP/53DAP1.18090.755
57DAP/55DAP1.30580.274
62DAP/57DAP0.538490.088
68DAP/62DAP1.128780.831
68DAP/14DAP0.956151

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker3.226290.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.980480.765
Mature Green Tomato/Ripe Tomato0.442830.038
Immature Eggplant/Mature Eggplant1.590570.05
Ripe Pepper/Ripe Tomato0.536280.224
Mature Eggplant/Ripe Tomato0.212950.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.960380.486
1-1-2/M821.005791
12-2/M820.933080.955
12-4/M821.303251
1-3/M822.004040.277
2-1-1/M821.096641
2-1/M820.986831
2-6/M821.004481
3-2/M821.019521
4-1-1/M821.009781
4-1/M821.838020.853
4-3-2/M821.365960.241
4-3/M820.940040.72
5-3/M820.952331
6-2/M820.985761
6-3/M821.358371
7-1/M821.00871
7-2/M820.870250.565
9-3-2/M821.59521

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.484160.277
IL2-6/WTpooled1.636970.415
IL7-5/WTpooled1.014861
IL7-3/WTpooled1.19061
IL12-4/WTpooled1.82290.532
IL1-4/WTpooled1.360261
WT/WTpooled1.007831

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.417380.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.094220.758
DC3000/delta hrp 6h1.02371
DC3000/delta hrp 12h1.007381
DC3000/delta hrp 24h1.21170.483

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.067580.094
DC3000 delta B/DC3000 delta AB1.318420.208

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.4060.254
Exp 36h1.016041
Exp 60h1.163350.399

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.99921
Var 0h0.897980.933
Var 12h I row2-row10.990021
Var 12h NI row2-row11.100760.649
Var 36h I row2-row11.51410.309
Var 36h NI row2-row10.81870.61
Var 60h I row2-row10.808530.582
Var 60h NI row2-row10.956741
Time course 0hI-0hNI1.017530.852
Time course 12hI-12hNI0.879030.228
Time course 36hI-36hNI1.112620.248
Time course 60hI-60hNI3.028460.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.835890.286
transgenic ySAMdc/azygous control (breaker)0.830580.251
transgenic ySAMdc/azygous control (red)1.245590.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.68150.035

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.889680.284

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.66320.105
Manapal/WT (break)1.371581
Manapal/WT (red)0.461230.188