Expression of 1-1-6.3.1.14

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.161020.485
27DAP/17DAP1.063360.905
39DAP/27DAP0.939270.462
41DAP/39DAP0.945750.772
42DAP/41DAP1.095270.843
43DAP/42DAP1.0681
47DAP/43DAP1.163280.647
52DAP/47DAP0.828010.539
57DAP/52DAP0.956270.936

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.32890.089
17DAP/reference0.908770.18
27DAP/reference0.923380.327
39DAP/reference0.915930.36
41DAP/reference0.946520.201
42DAP/reference1.024081
43DAP/reference0.940880.464
47DAP/reference1.095890.081
52DAP/reference1.040590.663
57DAP/reference1.078980.582

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.769530.112
27DAP/17DAP1.172180.506
39DAP/27DAP1.001240.964
41DAP/39DAP0.942910.861
42DAP/41DAP1.137530.663
43DAP/42DAP1.029380.83
47DAP/43DAP0.916550.347
52DAP/47DAP0.956330.848
57DAP/52DAP0.832920.106
57DAP/7DAP0.618651

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.286750.083
17DAP/reference1.076910.896
27DAP/reference1.046970.974
39DAP/reference0.984180.64
41DAP/reference1.197320.232
42DAP/reference1.279130.132
43DAP/reference1.058460.873
47DAP/reference0.965510.671
52DAP/reference1.224160.081
57DAP/reference0.959870.314

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.184750.38
17DAP/reference1.168220.117
27DAP/reference1.339330.126
39DAP/reference1.388370.023
41DAP/reference1.438040.025
42DAP/reference1.282590.049
43DAP/reference1.254730.251
47DAP/reference1.114730.095
52DAP/reference1.165780.012
57DAP/reference0.998960.789

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.147620.158
17DAP/reference1.282880.169
27DAP/reference1.036991
39DAP/reference1.232590.026
41DAP/reference0.968490.459
42DAP/reference1.238770.51
43DAP/reference1.374560.381
47DAP/reference1.099680.61
52DAP/reference1.070810.99
57DAP/reference1.533590.038

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.907730.961
26DAP/20DAP0.831570.512
34DAP/26DAP1.047381
51DAP/34DAP0.706310.078
52DAP/51DAP0.938151
53DAP/52DAP1.139740.868
55DAP/53DAP0.848370.462
57DAP/55DAP0.922550.652
62DAP/57DAP0.950930.871
68DAP/62DAP1.383280.042
68DAP/14DAP1.44820.125

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.544930.022

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.882420.39
Mature Green Tomato/Ripe Tomato1.567150.077
Immature Eggplant/Mature Eggplant0.808780.125
Ripe Pepper/Ripe Tomato1.360381
Mature Eggplant/Ripe Tomato1.553940.268

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.345150.526
1-1-2/M821.241821
12-2/M820.928270.639
12-4/M821.053751
1-3/M820.729070.441
2-1-1/M821.114320.241
2-1/M821.229361
2-6/M820.986521
3-2/M821.050990.443
4-1-1/M821.067541
4-1/M821.80716
4-3-2/M821.121251
4-3/M821.072151
5-3/M820.997141
6-2/M820.67008
6-3/M82N/AN/A
7-1/M820.99578
7-2/M820.860850.796
9-3-2/M820.88440.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.929241
IL2-6/WTpooledN/AN/A
IL7-5/WTpooled1.345020.75
IL7-3/WTpooled0.37134
IL12-4/WTpooledN/AN/A
IL1-4/WTpooled1.12351
WT/WTpooled1.20261

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.142280.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.069420.875
DC3000/delta hrp 6h0.916820.95
DC3000/delta hrp 12h1.024111
DC3000/delta hrp 24h0.955960.607

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.14095
DC3000 delta B/DC3000 delta AB1.012040.748

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.900151
Exp 36h1.052221
Exp 60h1.079050.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.054761
Var 0h0.727891
Var 12h I row2-row11.212490.473
Var 12h NI row2-row11.204261
Var 36h I row2-row10.912691
Var 36h NI row2-row10.948730.791
Var 60h I row2-row10.94005
Var 60h NI row2-row11.004531
Time course 0hI-0hNI0.963220.754
Time course 12hI-12hNI0.97760.802
Time course 36hI-36hNI0.945720.29
Time course 60hI-60hNI0.796790.011

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.186340.267
transgenic ySAMdc/azygous control (breaker)1.120140.248
transgenic ySAMdc/azygous control (red)0.998891

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.039020.194

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.004341

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.13930.14
Manapal/WT (break)1.087751
Manapal/WT (red)2.239770.126