Expression of 1-1-6.3.1.6
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.03734 | 0.858 |
27DAP/17DAP | 0.97746 | 0.957 |
39DAP/27DAP | 0.83086 | 0.544 |
41DAP/39DAP | 1.26932 | 0.545 |
42DAP/41DAP | 0.96848 | 1 |
43DAP/42DAP | 1.21585 | 0.655 |
47DAP/43DAP | 1.16249 | 0.909 |
52DAP/47DAP | 0.74012 | 0.374 |
57DAP/52DAP | 0.77772 | 0.666 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.45242 | 0.101 |
17DAP/reference | 1.12318 | 0.117 |
27DAP/reference | 1.17563 | 0.096 |
39DAP/reference | 1.22704 | 0.129 |
41DAP/reference | 1.52396 | 0.032 |
42DAP/reference | 1.66216 | 0.002 |
43DAP/reference | 1.28555 | 0.042 |
47DAP/reference | 1.50735 | 0.004 |
52DAP/reference | 1.41234 | 0.031 |
57DAP/reference | 1.04321 | 0.805 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.93249 | 0.595 |
27DAP/17DAP | 0.95954 | 0.782 |
39DAP/27DAP | 0.96561 | 0.804 |
41DAP/39DAP | 1.38644 | 0.304 |
42DAP/41DAP | 1.01192 | 0.781 |
43DAP/42DAP | 1.06111 | 0.513 |
47DAP/43DAP | 1.12963 | 0.756 |
52DAP/47DAP | 1.13217 | 0.66 |
57DAP/52DAP | 1.19784 | 0.251 |
57DAP/7DAP | 1.18474 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.08654 | 0.776 |
17DAP/reference | 0.95481 | 0.389 |
27DAP/reference | 1.36692 | 0.06 |
39DAP/reference | 0.96236 | 0.411 |
41DAP/reference | 1.03553 | 0.977 |
42DAP/reference | 1.1877 | 0.233 |
43DAP/reference | 1.10225 | 1 |
47DAP/reference | 1.33269 | 0.404 |
52DAP/reference | 0.9619 | 0.435 |
57DAP/reference | 1.02034 | 0.775 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.27732 | 0.491 |
17DAP/reference | 2.31303 | 0.012 |
27DAP/reference | 2.42264 | 0.014 |
39DAP/reference | 1.97833 | 0.011 |
41DAP/reference | 1.94553 | 0.011 |
42DAP/reference | 2.16608 | 0.007 |
43DAP/reference | 1.80326 | 0.031 |
47DAP/reference | 1.9941 | 0.008 |
52DAP/reference | 1.48416 | 0.008 |
57DAP/reference | 1.67718 | 0.03 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.06419 | 0.676 |
17DAP/reference | 3.23686 | 0.39 |
27DAP/reference | 0.95987 | 0.465 |
39DAP/reference | 1.15533 | 0.285 |
41DAP/reference | 1.41286 | 0.319 |
42DAP/reference | 1.72844 | 0.321 |
43DAP/reference | 1.6361 | 0.259 |
47DAP/reference | 1.57457 | 0.048 |
52DAP/reference | 1.51881 | 0.312 |
57DAP/reference | 1.89546 | 0.011 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.02921 | 1 |
26DAP/20DAP | 1.31158 | |
34DAP/26DAP | 2.7339 | 0.819 |
51DAP/34DAP | 0.9441 | 0.791 |
52DAP/51DAP | 0.88608 | 0.151 |
53DAP/52DAP | 1.20752 | 0.594 |
55DAP/53DAP | 1.12554 | 0.537 |
57DAP/55DAP | 1.00809 | 0.961 |
62DAP/57DAP | 1.02389 | 1 |
68DAP/62DAP | 0.91556 | 0.81 |
68DAP/14DAP | 1.04109 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.48038 | 0.021 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.95916 | 0.673 |
Mature Green Tomato/Ripe Tomato | 1.00453 | 0.898 |
Immature Eggplant/Mature Eggplant | 0.85661 | 0.134 |
Ripe Pepper/Ripe Tomato | 1.10785 | 1 |
Mature Eggplant/Ripe Tomato | 1.45857 | 0.373 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.88321 | 0.944 |
1-1-2/M82 | N/A | N/A |
12-2/M82 | 0.63755 | |
12-4/M82 | 1 | 1 |
1-3/M82 | 4.49236 | |
2-1-1/M82 | 0.78818 | |
2-1/M82 | 0.71946 | |
2-6/M82 | N/A | N/A |
3-2/M82 | 1.09487 | |
4-1-1/M82 | 1.21478 | |
4-1/M82 | 0.68068 | |
4-3-2/M82 | 1.11476 | |
4-3/M82 | 1.02285 | 1 |
5-3/M82 | 1.16471 | 0.496 |
6-2/M82 | 0.87881 | |
6-3/M82 | 0.7091 | |
7-1/M82 | N/A | N/A |
7-2/M82 | 1.01794 | |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.12088 | 0.493 |
IL2-6/WTpooled | 0.91993 | |
IL7-5/WTpooled | 1.47237 | |
IL7-3/WTpooled | 0.9515 | 1 |
IL12-4/WTpooled | 0.76159 | 0.71 |
IL1-4/WTpooled | 1.07884 | 1 |
WT/WTpooled | 0.9307 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.95095 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.07876 | 0.921 |
DC3000/delta hrp 6h | 0.89533 | 0.95 |
DC3000/delta hrp 12h | 1.31595 | 1 |
DC3000/delta hrp 24h | 1.09447 | 0.467 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.81539 | 0.124 |
DC3000 delta B/DC3000 delta AB | 1.07092 | 0.544 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.93636 | 1 |
Exp 36h | 1.05082 | 1 |
Exp 60h | 1.05377 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.97776 | 1 |
Var 0h | 0.97559 | 1 |
Var 12h I row2-row1 | 1.05247 | 0.795 |
Var 12h NI row2-row1 | 1.0509 | 1 |
Var 36h I row2-row1 | 1.09996 | 1 |
Var 36h NI row2-row1 | 0.95068 | 0.584 |
Var 60h I row2-row1 | 1.00605 | |
Var 60h NI row2-row1 | 1.01413 | 1 |
Time course 0hI-0hNI | 0.97446 | 0.881 |
Time course 12hI-12hNI | 1.00063 | 1 |
Time course 36hI-36hNI | 0.92448 | 0.25 |
Time course 60hI-60hNI | 0.6761 | 0.007 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.91766 | 0.299 |
transgenic ySAMdc/azygous control (breaker) | 0.91786 | 0.173 |
transgenic ySAMdc/azygous control (red) | 1.12118 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.85311 | 0.078 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.0285 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.95843 | 1 |
Manapal/WT (break) | 1.12378 | 0.381 |
Manapal/WT (red) | 1.70342 | 1 |
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