Expression of 1-1-6.3.1.6

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.037340.858
27DAP/17DAP0.977460.957
39DAP/27DAP0.830860.544
41DAP/39DAP1.269320.545
42DAP/41DAP0.968481
43DAP/42DAP1.215850.655
47DAP/43DAP1.162490.909
52DAP/47DAP0.740120.374
57DAP/52DAP0.777720.666

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.452420.101
17DAP/reference1.123180.117
27DAP/reference1.175630.096
39DAP/reference1.227040.129
41DAP/reference1.523960.032
42DAP/reference1.662160.002
43DAP/reference1.285550.042
47DAP/reference1.507350.004
52DAP/reference1.412340.031
57DAP/reference1.043210.805

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.932490.595
27DAP/17DAP0.959540.782
39DAP/27DAP0.965610.804
41DAP/39DAP1.386440.304
42DAP/41DAP1.011920.781
43DAP/42DAP1.061110.513
47DAP/43DAP1.129630.756
52DAP/47DAP1.132170.66
57DAP/52DAP1.197840.251
57DAP/7DAP1.184741

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.086540.776
17DAP/reference0.954810.389
27DAP/reference1.366920.06
39DAP/reference0.962360.411
41DAP/reference1.035530.977
42DAP/reference1.18770.233
43DAP/reference1.102251
47DAP/reference1.332690.404
52DAP/reference0.96190.435
57DAP/reference1.020340.775

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.277320.491
17DAP/reference2.313030.012
27DAP/reference2.422640.014
39DAP/reference1.978330.011
41DAP/reference1.945530.011
42DAP/reference2.166080.007
43DAP/reference1.803260.031
47DAP/reference1.99410.008
52DAP/reference1.484160.008
57DAP/reference1.677180.03

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.064190.676
17DAP/reference3.236860.39
27DAP/reference0.959870.465
39DAP/reference1.155330.285
41DAP/reference1.412860.319
42DAP/reference1.728440.321
43DAP/reference1.63610.259
47DAP/reference1.574570.048
52DAP/reference1.518810.312
57DAP/reference1.895460.011

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.029211
26DAP/20DAP1.31158
34DAP/26DAP2.73390.819
51DAP/34DAP0.94410.791
52DAP/51DAP0.886080.151
53DAP/52DAP1.207520.594
55DAP/53DAP1.125540.537
57DAP/55DAP1.008090.961
62DAP/57DAP1.023891
68DAP/62DAP0.915560.81
68DAP/14DAP1.041091

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.480380.021

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.959160.673
Mature Green Tomato/Ripe Tomato1.004530.898
Immature Eggplant/Mature Eggplant0.856610.134
Ripe Pepper/Ripe Tomato1.107851
Mature Eggplant/Ripe Tomato1.458570.373

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.883210.944
1-1-2/M82N/AN/A
12-2/M820.63755
12-4/M8211
1-3/M824.49236
2-1-1/M820.78818
2-1/M820.71946
2-6/M82N/AN/A
3-2/M821.09487
4-1-1/M821.21478
4-1/M820.68068
4-3-2/M821.11476
4-3/M821.022851
5-3/M821.164710.496
6-2/M820.87881
6-3/M820.7091
7-1/M82N/AN/A
7-2/M821.01794
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.120880.493
IL2-6/WTpooled0.91993
IL7-5/WTpooled1.47237
IL7-3/WTpooled0.95151
IL12-4/WTpooled0.761590.71
IL1-4/WTpooled1.078841
WT/WTpooled0.93071

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.950950.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.078760.921
DC3000/delta hrp 6h0.895330.95
DC3000/delta hrp 12h1.315951
DC3000/delta hrp 24h1.094470.467

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.815390.124
DC3000 delta B/DC3000 delta AB1.070920.544

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.936361
Exp 36h1.050821
Exp 60h1.053771

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.977761
Var 0h0.975591
Var 12h I row2-row11.052470.795
Var 12h NI row2-row11.05091
Var 36h I row2-row11.099961
Var 36h NI row2-row10.950680.584
Var 60h I row2-row11.00605
Var 60h NI row2-row11.014131
Time course 0hI-0hNI0.974460.881
Time course 12hI-12hNI1.000631
Time course 36hI-36hNI0.924480.25
Time course 60hI-60hNI0.67610.007

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.917660.299
transgenic ySAMdc/azygous control (breaker)0.917860.173
transgenic ySAMdc/azygous control (red)1.121180.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.853110.078

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.02851

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.958431
Manapal/WT (break)1.123780.381
Manapal/WT (red)1.703421