Expression of 1-1-6.3.10.21
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.11808 | 0.863 |
27DAP/17DAP | 1.17042 | 0.844 |
39DAP/27DAP | 1.59218 | 0.13 |
41DAP/39DAP | 0.80053 | 0.247 |
42DAP/41DAP | 0.77069 | 0.774 |
43DAP/42DAP | 1.07075 | 1 |
47DAP/43DAP | 0.92861 | 0.729 |
52DAP/47DAP | 0.87279 | 0.551 |
57DAP/52DAP | 1.033 | 0.983 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.57399 | 0.334 |
17DAP/reference | 0.87771 | 0.194 |
27DAP/reference | 1.01975 | 0.82 |
39DAP/reference | 0.98725 | 0.762 |
41DAP/reference | 1.0145 | 0.759 |
42DAP/reference | 1.20887 | 0.002 |
43DAP/reference | 1.16466 | 0.133 |
47DAP/reference | 1.27614 | 0.001 |
52DAP/reference | 2.00368 | 0.007 |
57DAP/reference | 1.75183 | 0.023 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.22659 | 0.258 |
27DAP/17DAP | 0.80902 | 0.121 |
39DAP/27DAP | 1.07735 | 0.56 |
41DAP/39DAP | 1.04641 | 0.876 |
42DAP/41DAP | 0.86016 | 0.161 |
43DAP/42DAP | 1.0582 | 0.585 |
47DAP/43DAP | 1.09062 | 0.563 |
52DAP/47DAP | 1.05599 | 0.892 |
57DAP/52DAP | 1.05014 | 0.858 |
57DAP/7DAP | 1.10081 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.06978 | 0.511 |
17DAP/reference | 0.83485 | 0.094 |
27DAP/reference | 1.07584 | 0.664 |
39DAP/reference | 1.2436 | 0.107 |
41DAP/reference | 0.98122 | 0.538 |
42DAP/reference | 1.07587 | 0.889 |
43DAP/reference | 1.95644 | 0.006 |
47DAP/reference | 1.38913 | 0.048 |
52DAP/reference | 1.7893 | 0.014 |
57DAP/reference | 1.61502 | 0.014 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.56951 | 0.634 |
17DAP/reference | 0.75956 | 0.12 |
27DAP/reference | 1.11164 | 1 |
39DAP/reference | 1.26506 | 0.239 |
41DAP/reference | 1.59628 | 0.01 |
42DAP/reference | 1.5072 | |
43DAP/reference | 0.99725 | 0.846 |
47DAP/reference | 1.15617 | 0.841 |
52DAP/reference | 1.37322 | 0.006 |
57DAP/reference | 1.11259 | 0.2 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.74457 | 0.017 |
17DAP/reference | 0.97014 | 0.624 |
27DAP/reference | 1.16288 | 0.237 |
39DAP/reference | 0.98509 | 0.643 |
41DAP/reference | 1.01236 | 0.754 |
42DAP/reference | 1.73784 | 0.327 |
43DAP/reference | 1.0918 | 0.599 |
47DAP/reference | 2.03456 | 0.014 |
52DAP/reference | 1.78291 | 0.119 |
57DAP/reference | 1.13501 | 0.592 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.97543 | 1 |
26DAP/20DAP | 1.17549 | 0.839 |
34DAP/26DAP | 1.22097 | 0.819 |
51DAP/34DAP | 1.14886 | 0.654 |
52DAP/51DAP | 1.61926 | 0.077 |
53DAP/52DAP | 1.01147 | 1 |
55DAP/53DAP | 1.24118 | 0.051 |
57DAP/55DAP | 0.72402 | 0.081 |
62DAP/57DAP | 2.15251 | 0.04 |
68DAP/62DAP | 5.74624 | 0.095 |
68DAP/14DAP | 6.50512 | 0.021 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.3547 | 0.035 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 2.7383 | 0.058 |
Mature Green Tomato/Ripe Tomato | 1.66595 | 0.03 |
Immature Eggplant/Mature Eggplant | 0.52105 | 0.084 |
Ripe Pepper/Ripe Tomato | 0.73469 | 1 |
Mature Eggplant/Ripe Tomato | 0.94019 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.7783 | |
1-1-2/M82 | 0.85351 | |
12-2/M82 | 0.87499 | |
12-4/M82 | 1.28607 | 0.655 |
1-3/M82 | 1.42209 | |
2-1-1/M82 | 1.49997 | 0.764 |
2-1/M82 | 0.86697 | |
2-6/M82 | 0.84762 | 1 |
3-2/M82 | 1.83106 | 0.967 |
4-1-1/M82 | 1.40121 | |
4-1/M82 | 1.18674 | |
4-3-2/M82 | 1.81466 | |
4-3/M82 | 1.4161 | 0.268 |
5-3/M82 | 0.56592 | 0.642 |
6-2/M82 | 1.07216 | |
6-3/M82 | 0.22942 | |
7-1/M82 | 0.98449 | 1 |
7-2/M82 | 0.91381 | 0.881 |
9-3-2/M82 | 1.29549 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.99354 | |
IL2-6/WTpooled | 0.97479 | |
IL7-5/WTpooled | 1.17942 | 1 |
IL7-3/WTpooled | 1.00982 | 1 |
IL12-4/WTpooled | 0.95876 | 1 |
IL1-4/WTpooled | 1.04995 | 1 |
WT/WTpooled | 1.04013 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.94488 | 0.75 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.92225 | 1 |
DC3000/delta hrp 6h | 0.98191 | 0.95 |
DC3000/delta hrp 12h | 1.05995 | 1 |
DC3000/delta hrp 24h | 2.13279 | 0.042 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.86872 | |
DC3000 delta B/DC3000 delta AB | 1.01371 | 1 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.99402 | 1 |
Exp 36h | 0.71625 | 0.471 |
Exp 60h | 0.66981 | 0.343 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.98912 | 1 |
Var 0h | 0.85579 | 0.261 |
Var 12h I row2-row1 | 0.89468 | 0.338 |
Var 12h NI row2-row1 | 0.99164 | 1 |
Var 36h I row2-row1 | 0.91104 | 1 |
Var 36h NI row2-row1 | 0.8554 | 0.225 |
Var 60h I row2-row1 | 0.90855 | 0.582 |
Var 60h NI row2-row1 | 0.82805 | 0.63 |
Time course 0hI-0hNI | 1.0062 | 1 |
Time course 12hI-12hNI | 1.00987 | 0.854 |
Time course 36hI-36hNI | 1.1384 | 0.056 |
Time course 60hI-60hNI | 1.07465 | 0.359 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.91807 | 0.391 |
transgenic ySAMdc/azygous control (breaker) | 0.64865 | 0.173 |
transgenic ySAMdc/azygous control (red) | 1.0604 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.9374 | 0.163 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.62019 | 0.231 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.17856 | 0.307 |
Manapal/WT (break) | 1.41343 | 0.381 |
Manapal/WT (red) | 1.24027 | 0.413 |
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