Expression of 1-1-6.3.10.21

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.118080.863
27DAP/17DAP1.170420.844
39DAP/27DAP1.592180.13
41DAP/39DAP0.800530.247
42DAP/41DAP0.770690.774
43DAP/42DAP1.070751
47DAP/43DAP0.928610.729
52DAP/47DAP0.872790.551
57DAP/52DAP1.0330.983

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.573990.334
17DAP/reference0.877710.194
27DAP/reference1.019750.82
39DAP/reference0.987250.762
41DAP/reference1.01450.759
42DAP/reference1.208870.002
43DAP/reference1.164660.133
47DAP/reference1.276140.001
52DAP/reference2.003680.007
57DAP/reference1.751830.023

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.226590.258
27DAP/17DAP0.809020.121
39DAP/27DAP1.077350.56
41DAP/39DAP1.046410.876
42DAP/41DAP0.860160.161
43DAP/42DAP1.05820.585
47DAP/43DAP1.090620.563
52DAP/47DAP1.055990.892
57DAP/52DAP1.050140.858
57DAP/7DAP1.100811

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.069780.511
17DAP/reference0.834850.094
27DAP/reference1.075840.664
39DAP/reference1.24360.107
41DAP/reference0.981220.538
42DAP/reference1.075870.889
43DAP/reference1.956440.006
47DAP/reference1.389130.048
52DAP/reference1.78930.014
57DAP/reference1.615020.014

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.569510.634
17DAP/reference0.759560.12
27DAP/reference1.111641
39DAP/reference1.265060.239
41DAP/reference1.596280.01
42DAP/reference1.5072
43DAP/reference0.997250.846
47DAP/reference1.156170.841
52DAP/reference1.373220.006
57DAP/reference1.112590.2

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.744570.017
17DAP/reference0.970140.624
27DAP/reference1.162880.237
39DAP/reference0.985090.643
41DAP/reference1.012360.754
42DAP/reference1.737840.327
43DAP/reference1.09180.599
47DAP/reference2.034560.014
52DAP/reference1.782910.119
57DAP/reference1.135010.592

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.975431
26DAP/20DAP1.175490.839
34DAP/26DAP1.220970.819
51DAP/34DAP1.148860.654
52DAP/51DAP1.619260.077
53DAP/52DAP1.011471
55DAP/53DAP1.241180.051
57DAP/55DAP0.724020.081
62DAP/57DAP2.152510.04
68DAP/62DAP5.746240.095
68DAP/14DAP6.505120.021

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.35470.035

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper2.73830.058
Mature Green Tomato/Ripe Tomato1.665950.03
Immature Eggplant/Mature Eggplant0.521050.084
Ripe Pepper/Ripe Tomato0.734691
Mature Eggplant/Ripe Tomato0.940191

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.7783
1-1-2/M820.85351
12-2/M820.87499
12-4/M821.286070.655
1-3/M821.42209
2-1-1/M821.499970.764
2-1/M820.86697
2-6/M820.847621
3-2/M821.831060.967
4-1-1/M821.40121
4-1/M821.18674
4-3-2/M821.81466
4-3/M821.41610.268
5-3/M820.565920.642
6-2/M821.07216
6-3/M820.22942
7-1/M820.984491
7-2/M820.913810.881
9-3-2/M821.295491

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.99354
IL2-6/WTpooled0.97479
IL7-5/WTpooled1.179421
IL7-3/WTpooled1.009821
IL12-4/WTpooled0.958761
IL1-4/WTpooled1.049951
WT/WTpooled1.040131

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.944880.75

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.922251
DC3000/delta hrp 6h0.981910.95
DC3000/delta hrp 12h1.059951
DC3000/delta hrp 24h2.132790.042

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.86872
DC3000 delta B/DC3000 delta AB1.013711

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.994021
Exp 36h0.716250.471
Exp 60h0.669810.343

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.989121
Var 0h0.855790.261
Var 12h I row2-row10.894680.338
Var 12h NI row2-row10.991641
Var 36h I row2-row10.911041
Var 36h NI row2-row10.85540.225
Var 60h I row2-row10.908550.582
Var 60h NI row2-row10.828050.63
Time course 0hI-0hNI1.00621
Time course 12hI-12hNI1.009870.854
Time course 36hI-36hNI1.13840.056
Time course 60hI-60hNI1.074650.359

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.918070.391
transgenic ySAMdc/azygous control (breaker)0.648650.173
transgenic ySAMdc/azygous control (red)1.06041

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.93740.163

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.620190.231

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.178560.307
Manapal/WT (break)1.413430.381
Manapal/WT (red)1.240270.413