Expression of 1-1-6.3.11.9
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.85702 | 0.166 |
27DAP/17DAP | 1.21087 | 0.819 |
39DAP/27DAP | 0.96239 | 0.608 |
41DAP/39DAP | 1.10169 | 0.591 |
42DAP/41DAP | 0.96264 | 1 |
43DAP/42DAP | 0.99656 | 0.937 |
47DAP/43DAP | 1.05182 | 0.943 |
52DAP/47DAP | 0.92441 | 0.758 |
57DAP/52DAP | 1.05242 | 0.977 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.02737 | 1 |
17DAP/reference | 1.08175 | 0.059 |
27DAP/reference | 1.06844 | 0.322 |
39DAP/reference | 1.06481 | 0.043 |
41DAP/reference | 1.07797 | 0.073 |
42DAP/reference | 0.94784 | 0.064 |
43DAP/reference | 0.96219 | 0.5 |
47DAP/reference | 0.92303 | 0.09 |
52DAP/reference | 0.86492 | 0.099 |
57DAP/reference | 0.93922 | 0.294 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.89937 | 0.363 |
27DAP/17DAP | 1.09761 | 0.664 |
39DAP/27DAP | 1.04486 | 0.811 |
41DAP/39DAP | 1.02098 | 0.914 |
42DAP/41DAP | 1.00288 | 0.907 |
43DAP/42DAP | 0.93422 | 0.089 |
47DAP/43DAP | 0.99106 | 0.971 |
52DAP/47DAP | 0.94642 | 0.6 |
57DAP/52DAP | 1.02562 | 0.906 |
57DAP/7DAP | 0.99673 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.03165 | 1 |
17DAP/reference | 0.97698 | 0.447 |
27DAP/reference | 0.96307 | 0.248 |
39DAP/reference | 0.69303 | 0.013 |
41DAP/reference | 0.79267 | 0.046 |
42DAP/reference | 0.65773 | 0.01 |
43DAP/reference | 0.77147 | 0.022 |
47DAP/reference | 0.93582 | 0.168 |
52DAP/reference | 0.84205 | 0.126 |
57DAP/reference | 0.88102 | 0.191 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.08127 | 0.254 |
17DAP/reference | 1.07347 | 0.459 |
27DAP/reference | 0.90948 | 0.173 |
39DAP/reference | 0.92333 | 0.25 |
41DAP/reference | 0.85967 | 0.089 |
42DAP/reference | 0.93413 | 0.212 |
43DAP/reference | 1.00466 | 0.863 |
47DAP/reference | 1.00209 | 1 |
52DAP/reference | 0.95981 | 0.171 |
57DAP/reference | 1.02662 | 0.771 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.83063 | 0.087 |
17DAP/reference | 0.90729 | 0.348 |
27DAP/reference | 0.86504 | 0.073 |
39DAP/reference | 0.87212 | 0.037 |
41DAP/reference | 0.96021 | 0.512 |
42DAP/reference | 0.82513 | 0.172 |
43DAP/reference | 0.83933 | 0.037 |
47DAP/reference | 0.94481 | 0.325 |
52DAP/reference | 0.89794 | 0.368 |
57DAP/reference | 0.76842 | 0.016 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.01403 | 0.966 |
26DAP/20DAP | 1.00372 | 1 |
34DAP/26DAP | 0.98101 | 0.97 |
51DAP/34DAP | 0.96494 | 0.816 |
52DAP/51DAP | 0.98441 | 1 |
53DAP/52DAP | 1.17148 | 0.343 |
55DAP/53DAP | 1.01173 | 0.951 |
57DAP/55DAP | 0.99762 | 0.953 |
62DAP/57DAP | 1.03131 | 0.902 |
68DAP/62DAP | 0.99163 | 0.885 |
68DAP/14DAP | 0.70738 | 0.121 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.19612 | 0.212 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.37275 | 0.068 |
Mature Green Tomato/Ripe Tomato | 0.93358 | 0.569 |
Immature Eggplant/Mature Eggplant | 1.39414 | 0.05 |
Ripe Pepper/Ripe Tomato | 0.60576 | 0.224 |
Mature Eggplant/Ripe Tomato | 1.084 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.07067 | 0.877 |
1-1-2/M82 | 1.16339 | 1 |
12-2/M82 | 1.00247 | 1 |
12-4/M82 | 0.9904 | 1 |
1-3/M82 | 0.99961 | 1 |
2-1-1/M82 | 1.17221 | 0.764 |
2-1/M82 | 1.11138 | 0.345 |
2-6/M82 | 1.13004 | 0.594 |
3-2/M82 | 1.05902 | 0.84 |
4-1-1/M82 | 0.98826 | 1 |
4-1/M82 | 0.95084 | 0.665 |
4-3-2/M82 | 1.21754 | 0.508 |
4-3/M82 | 1.0802 | 1 |
5-3/M82 | 1.01295 | 1 |
6-2/M82 | 1.10161 | 1 |
6-3/M82 | N/A | N/A |
7-1/M82 | 0.78978 | |
7-2/M82 | 1.10231 | 1 |
9-3-2/M82 | 1.25589 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.01414 | 1 |
IL2-6/WTpooled | 0.72991 | 0.473 |
IL7-5/WTpooled | 0.93902 | 1 |
IL7-3/WTpooled | 1.16805 | 1 |
IL12-4/WTpooled | 1.11833 | 0.646 |
IL1-4/WTpooled | 0.97589 | 0.699 |
WT/WTpooled | 1.01099 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.03855 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.03989 | 0.921 |
DC3000/delta hrp 6h | 0.98893 | 0.95 |
DC3000/delta hrp 12h | 0.92943 | 1 |
DC3000/delta hrp 24h | 1.17225 | 0.254 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.94497 | 0.955 |
DC3000 delta B/DC3000 delta AB | 1.16088 | 0.225 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.26354 | 1 |
Exp 36h | 1.23212 | 0.326 |
Exp 60h | 1.24004 | 0.227 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.03025 | 1 |
Var 0h | 1.08778 | 0.782 |
Var 12h I row2-row1 | 0.98546 | 0.948 |
Var 12h NI row2-row1 | 1.08664 | 0.266 |
Var 36h I row2-row1 | 1.10108 | 0.309 |
Var 36h NI row2-row1 | 0.88879 | 0.432 |
Var 60h I row2-row1 | 0.80644 | 0.306 |
Var 60h NI row2-row1 | 0.95508 | 0.572 |
Time course 0hI-0hNI | 0.98398 | 0.917 |
Time course 12hI-12hNI | 1.08972 | 0.066 |
Time course 36hI-36hNI | 1.26035 | 0.006 |
Time course 60hI-60hNI | 1.8479 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.09564 | 0.256 |
transgenic ySAMdc/azygous control (breaker) | 0.8464 | 0.131 |
transgenic ySAMdc/azygous control (red) | 1.07657 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.05222 | 0.105 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.59809 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.98051 | 1 |
Manapal/WT (break) | 0.92479 | 1 |
Manapal/WT (red) | 0.79847 | 0.242 |
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