Expression of 1-1-6.3.12.17
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.70075 | 0.054 |
27DAP/17DAP | 0.79001 | 0.475 |
39DAP/27DAP | 1.75173 | 0.08 |
41DAP/39DAP | 0.46996 | 0.041 |
42DAP/41DAP | 0.98827 | 1 |
43DAP/42DAP | 0.82545 | 0.686 |
47DAP/43DAP | 0.42507 | 0.049 |
52DAP/47DAP | 1.38334 | 0.362 |
57DAP/52DAP | 1.49811 | 0.853 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.66247 | 0.008 |
17DAP/reference | 1.01048 | 0.701 |
27DAP/reference | 0.6007 | 0.015 |
39DAP/reference | 0.75562 | 0.103 |
41DAP/reference | 0.70291 | 0.039 |
42DAP/reference | 1.13299 | 0.055 |
43DAP/reference | 0.78095 | 0.058 |
47DAP/reference | 0.84642 | 0.009 |
52DAP/reference | 0.61404 | 0.02 |
57DAP/reference | 0.78226 | 0.022 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.88514 | 0.153 |
27DAP/17DAP | 1.0332 | 0.915 |
39DAP/27DAP | 0.78259 | 0.108 |
41DAP/39DAP | 1.18522 | 0.921 |
42DAP/41DAP | 0.92165 | 0.541 |
43DAP/42DAP | 0.79543 | 0.023 |
47DAP/43DAP | 0.9334 | 0.606 |
52DAP/47DAP | 0.58597 | 0.048 |
57DAP/52DAP | 0.80776 | 0.454 |
57DAP/7DAP | 0.23468 | 0.186 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.87536 | 0.024 |
17DAP/reference | 1.53025 | 0.007 |
27DAP/reference | 1.15277 | 0.246 |
39DAP/reference | 0.93097 | 0.034 |
41DAP/reference | 0.93247 | 0.203 |
42DAP/reference | 0.92817 | 0.151 |
43DAP/reference | 1.00046 | 0.727 |
47DAP/reference | 0.97404 | 0.671 |
52DAP/reference | 1.08535 | 0.375 |
57DAP/reference | 1.04112 | 1 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.24716 | 0.325 |
17DAP/reference | 1.53845 | 0.011 |
27DAP/reference | 1.57064 | 0.025 |
39DAP/reference | 1.02984 | 0.722 |
41DAP/reference | 1.35621 | 0.006 |
42DAP/reference | 1.57846 | 0.012 |
43DAP/reference | 0.84899 | 0.166 |
47DAP/reference | 1.16999 | 0.218 |
52DAP/reference | 0.65449 | 0.004 |
57DAP/reference | 0.70853 | 0.012 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.42318 | 0.026 |
17DAP/reference | 1.19882 | 0.326 |
27DAP/reference | 1.12948 | 0.248 |
39DAP/reference | 1.15501 | 0.067 |
41DAP/reference | 0.89338 | 0.07 |
42DAP/reference | 1.02798 | 0.923 |
43DAP/reference | 1.21519 | 0.452 |
47DAP/reference | 0.63512 | 0.006 |
52DAP/reference | 0.85074 | 0.131 |
57DAP/reference | 1.20088 | 0.8 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.05158 | 1 |
26DAP/20DAP | 3.85096 | 0.099 |
34DAP/26DAP | 0.73877 | 0.394 |
51DAP/34DAP | 0.92549 | 0.698 |
52DAP/51DAP | 0.85666 | 1 |
53DAP/52DAP | 0.78039 | 0.217 |
55DAP/53DAP | 0.92908 | 0.43 |
57DAP/55DAP | 1.39395 | 0.461 |
62DAP/57DAP | 0.92253 | 0.681 |
68DAP/62DAP | 1.40774 | 0.398 |
68DAP/14DAP | 1.35038 | 0.615 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 5.25921 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.09953 | 0.417 |
Mature Green Tomato/Ripe Tomato | 2.30812 | 0.185 |
Immature Eggplant/Mature Eggplant | 1.02401 | 0.528 |
Ripe Pepper/Ripe Tomato | 0.99898 | 1 |
Mature Eggplant/Ripe Tomato | 1.28719 | 0.268 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.87905 | 0.907 |
1-1-2/M82 | 1.13727 | 1 |
12-2/M82 | 0.76852 | 0.955 |
12-4/M82 | 1.2042 | 1 |
1-3/M82 | 1.14248 | |
2-1-1/M82 | 0.91176 | 0.784 |
2-1/M82 | 0.99046 | 1 |
2-6/M82 | 1.21157 | 0.395 |
3-2/M82 | 1.03202 | 0.967 |
4-1-1/M82 | 1.7944 | 1 |
4-1/M82 | 0.74058 | |
4-3-2/M82 | 1.35147 | 0.508 |
4-3/M82 | 1.65968 | 0.268 |
5-3/M82 | 1.49266 | 0.496 |
6-2/M82 | 2.62186 | 0.235 |
6-3/M82 | 0.99468 | 1 |
7-1/M82 | 1.09846 | |
7-2/M82 | 1.97048 | 0.385 |
9-3-2/M82 | 1.28634 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.79454 | 0.348 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.09033 | 1 |
IL12-4/WTpooled | 1.0551 | 0.785 |
IL1-4/WTpooled | 1.33268 | 1 |
WT/WTpooled | 1.02643 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.16987 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.08865 | 0.894 |
DC3000/delta hrp 6h | 1.08202 | 1 |
DC3000/delta hrp 12h | 1.4344 | 1 |
DC3000/delta hrp 24h | 1.22516 | 0.264 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.34211 | 0.042 |
DC3000 delta B/DC3000 delta AB | 1.50199 | 0.081 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.18961 | 1 |
Exp 36h | 1.2625 | 1 |
Exp 60h | 1.65052 | 0.237 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.96819 | 1 |
Var 0h | 1.06167 | 0.98 |
Var 12h I row2-row1 | 0.95628 | 0.856 |
Var 12h NI row2-row1 | 1.06972 | 1 |
Var 36h I row2-row1 | 1.11775 | 1 |
Var 36h NI row2-row1 | 0.86679 | 0.421 |
Var 60h I row2-row1 | 0.84208 | 0.285 |
Var 60h NI row2-row1 | 0.8179 | 0.63 |
Time course 0hI-0hNI | 1.10995 | 0.63 |
Time course 12hI-12hNI | 1.01856 | 1 |
Time course 36hI-36hNI | 1.46311 | 0.009 |
Time course 60hI-60hNI | 3.44926 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.05507 | 0.748 |
transgenic ySAMdc/azygous control (breaker) | 1.16928 | 1 |
transgenic ySAMdc/azygous control (red) | 1.18421 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.28884 | 0.223 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.02593 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.17114 | 0.307 |
Manapal/WT (break) | 1.00955 | 1 |
Manapal/WT (red) | 1.0625 | 1 |
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