Expression of 1-1-6.3.12.17

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.700750.054
27DAP/17DAP0.790010.475
39DAP/27DAP1.751730.08
41DAP/39DAP0.469960.041
42DAP/41DAP0.988271
43DAP/42DAP0.825450.686
47DAP/43DAP0.425070.049
52DAP/47DAP1.383340.362
57DAP/52DAP1.498110.853

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.662470.008
17DAP/reference1.010480.701
27DAP/reference0.60070.015
39DAP/reference0.755620.103
41DAP/reference0.702910.039
42DAP/reference1.132990.055
43DAP/reference0.780950.058
47DAP/reference0.846420.009
52DAP/reference0.614040.02
57DAP/reference0.782260.022

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.885140.153
27DAP/17DAP1.03320.915
39DAP/27DAP0.782590.108
41DAP/39DAP1.185220.921
42DAP/41DAP0.921650.541
43DAP/42DAP0.795430.023
47DAP/43DAP0.93340.606
52DAP/47DAP0.585970.048
57DAP/52DAP0.807760.454
57DAP/7DAP0.234680.186

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.875360.024
17DAP/reference1.530250.007
27DAP/reference1.152770.246
39DAP/reference0.930970.034
41DAP/reference0.932470.203
42DAP/reference0.928170.151
43DAP/reference1.000460.727
47DAP/reference0.974040.671
52DAP/reference1.085350.375
57DAP/reference1.041121

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.247160.325
17DAP/reference1.538450.011
27DAP/reference1.570640.025
39DAP/reference1.029840.722
41DAP/reference1.356210.006
42DAP/reference1.578460.012
43DAP/reference0.848990.166
47DAP/reference1.169990.218
52DAP/reference0.654490.004
57DAP/reference0.708530.012

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.423180.026
17DAP/reference1.198820.326
27DAP/reference1.129480.248
39DAP/reference1.155010.067
41DAP/reference0.893380.07
42DAP/reference1.027980.923
43DAP/reference1.215190.452
47DAP/reference0.635120.006
52DAP/reference0.850740.131
57DAP/reference1.200880.8

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.051581
26DAP/20DAP3.850960.099
34DAP/26DAP0.738770.394
51DAP/34DAP0.925490.698
52DAP/51DAP0.856661
53DAP/52DAP0.780390.217
55DAP/53DAP0.929080.43
57DAP/55DAP1.393950.461
62DAP/57DAP0.922530.681
68DAP/62DAP1.407740.398
68DAP/14DAP1.350380.615

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker5.259210.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.099530.417
Mature Green Tomato/Ripe Tomato2.308120.185
Immature Eggplant/Mature Eggplant1.024010.528
Ripe Pepper/Ripe Tomato0.998981
Mature Eggplant/Ripe Tomato1.287190.268

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.879050.907
1-1-2/M821.137271
12-2/M820.768520.955
12-4/M821.20421
1-3/M821.14248
2-1-1/M820.911760.784
2-1/M820.990461
2-6/M821.211570.395
3-2/M821.032020.967
4-1-1/M821.79441
4-1/M820.74058
4-3-2/M821.351470.508
4-3/M821.659680.268
5-3/M821.492660.496
6-2/M822.621860.235
6-3/M820.994681
7-1/M821.09846
7-2/M821.970480.385
9-3-2/M821.28634

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.794540.348
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.090331
IL12-4/WTpooled1.05510.785
IL1-4/WTpooled1.332681
WT/WTpooled1.026431

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.169871

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.088650.894
DC3000/delta hrp 6h1.082021
DC3000/delta hrp 12h1.43441
DC3000/delta hrp 24h1.225160.264

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.342110.042
DC3000 delta B/DC3000 delta AB1.501990.081

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.189611
Exp 36h1.26251
Exp 60h1.650520.237

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.968191
Var 0h1.061670.98
Var 12h I row2-row10.956280.856
Var 12h NI row2-row11.069721
Var 36h I row2-row11.117751
Var 36h NI row2-row10.866790.421
Var 60h I row2-row10.842080.285
Var 60h NI row2-row10.81790.63
Time course 0hI-0hNI1.109950.63
Time course 12hI-12hNI1.018561
Time course 36hI-36hNI1.463110.009
Time course 60hI-60hNI3.449260.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.055070.748
transgenic ySAMdc/azygous control (breaker)1.169281
transgenic ySAMdc/azygous control (red)1.184210.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.288840.223

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.025931

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.171140.307
Manapal/WT (break)1.009551
Manapal/WT (red)1.06251