Expression of 1-1-6.3.13.1

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.145930.602
27DAP/17DAP1.171020.842
39DAP/27DAP0.977910.749
41DAP/39DAP1.142680.27
42DAP/41DAP1.012841
43DAP/42DAP0.941050.833
47DAP/43DAP0.892440.64
52DAP/47DAP1.287140.485
57DAP/52DAP1.056470.969

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.928670.262
17DAP/reference0.939340.567
27DAP/reference0.965770.208
39DAP/reference0.957990.527
41DAP/reference0.918350.542
42DAP/reference0.916730.041
43DAP/reference0.984940.708
47DAP/reference0.929340.019
52DAP/reference0.882350.105
57DAP/reference0.922940.186

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.991530.801
27DAP/17DAP1.057770.751
39DAP/27DAP1.070650.46
41DAP/39DAP1.019650.895
42DAP/41DAP0.978710.768
43DAP/42DAP1.052820.413
47DAP/43DAP0.997660.998
52DAP/47DAP1.090570.71
57DAP/52DAP1.03230.8
57DAP/7DAP1.047910.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.922310.071
17DAP/reference0.981890.338
27DAP/reference1.009870.974
39DAP/reference1.037960.09
41DAP/reference0.945460.06
42DAP/reference1.025140.534
43DAP/reference0.997820.727
47DAP/reference0.922450.222
52DAP/reference0.996440.74
57DAP/reference0.970140.302

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.054980.343
17DAP/reference0.918150.176
27DAP/reference0.85670.097
39DAP/reference0.857550.083
41DAP/reference0.897130.063
42DAP/reference0.883560.212
43DAP/reference0.9870.681
47DAP/reference1.043460.621
52DAP/reference0.929640.086
57DAP/reference0.991910.754

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.970430.147
17DAP/reference1.072520.558
27DAP/reference0.995140.691
39DAP/reference0.996580.819
41DAP/reference0.98040.331
42DAP/reference0.969260.361
43DAP/reference0.93850.237
47DAP/reference0.954050.396
52DAP/reference0.994330.871
57DAP/reference0.854870.059

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.988021
26DAP/20DAP0.977861
34DAP/26DAP1.142580.819
51DAP/34DAP0.96510.727
52DAP/51DAP1.018540.783
53DAP/52DAP0.979830.902
55DAP/53DAP0.945910.592
57DAP/55DAP0.994710.955
62DAP/57DAP0.963190.871
68DAP/62DAP0.782150.314
68DAP/14DAP1.00581

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.089670.081

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.861270.371
Mature Green Tomato/Ripe Tomato0.94710.66
Immature Eggplant/Mature Eggplant1.022550.683
Ripe Pepper/Ripe Tomato0.885190.224
Mature Eggplant/Ripe Tomato0.79551

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.932550.944
1-1-2/M820.885990.958
12-2/M820.960550.862
12-4/M820.974140.619
1-3/M821.092910.232
2-1-1/M820.999051
2-1/M821.01067
2-6/M820.947841
3-2/M820.999261
4-1-1/M821.047091
4-1/M820.858060.867
4-3-2/M820.976231
4-3/M820.94120.72
5-3/M820.987681
6-2/M821.006851
6-3/M820.999541
7-1/M820.96330.803
7-2/M821.120131
9-3-2/M820.952591

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.067490.788
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.024861
IL12-4/WTpooled1.706870.48
IL1-4/WTpooled0.96694
WT/WTpooled1.067021

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.149440.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.118190.774
DC3000/delta hrp 6h1.331121
DC3000/delta hrp 12h0.842041
DC3000/delta hrp 24h1.018810.797

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.116660.042
DC3000 delta B/DC3000 delta AB1.056150.516

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.003151
Exp 36h1.145511
Exp 60h1.197910.399

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.010611
Var 0h0.991851
Var 12h I row2-row11.111620.254
Var 12h NI row2-row11.058171
Var 36h I row2-row10.973191
Var 36h NI row2-row10.866850.584
Var 60h I row2-row11.036760.562
Var 60h NI row2-row11.021211
Time course 0hI-0hNI1.084080.833
Time course 12hI-12hNI1.061120.741
Time course 36hI-36hNI1.191840.025
Time course 60hI-60hNI1.791230.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.948180.324
transgenic ySAMdc/azygous control (breaker)0.932750.251
transgenic ySAMdc/azygous control (red)1.011921

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.016320.247

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.648260.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.832030.172
Manapal/WT (break)0.907351
Manapal/WT (red)0.7550.199