Expression of 1-1-6.3.13.1
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.14593 | 0.602 |
27DAP/17DAP | 1.17102 | 0.842 |
39DAP/27DAP | 0.97791 | 0.749 |
41DAP/39DAP | 1.14268 | 0.27 |
42DAP/41DAP | 1.01284 | 1 |
43DAP/42DAP | 0.94105 | 0.833 |
47DAP/43DAP | 0.89244 | 0.64 |
52DAP/47DAP | 1.28714 | 0.485 |
57DAP/52DAP | 1.05647 | 0.969 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.92867 | 0.262 |
17DAP/reference | 0.93934 | 0.567 |
27DAP/reference | 0.96577 | 0.208 |
39DAP/reference | 0.95799 | 0.527 |
41DAP/reference | 0.91835 | 0.542 |
42DAP/reference | 0.91673 | 0.041 |
43DAP/reference | 0.98494 | 0.708 |
47DAP/reference | 0.92934 | 0.019 |
52DAP/reference | 0.88235 | 0.105 |
57DAP/reference | 0.92294 | 0.186 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.99153 | 0.801 |
27DAP/17DAP | 1.05777 | 0.751 |
39DAP/27DAP | 1.07065 | 0.46 |
41DAP/39DAP | 1.01965 | 0.895 |
42DAP/41DAP | 0.97871 | 0.768 |
43DAP/42DAP | 1.05282 | 0.413 |
47DAP/43DAP | 0.99766 | 0.998 |
52DAP/47DAP | 1.09057 | 0.71 |
57DAP/52DAP | 1.0323 | 0.8 |
57DAP/7DAP | 1.04791 | 0.365 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.92231 | 0.071 |
17DAP/reference | 0.98189 | 0.338 |
27DAP/reference | 1.00987 | 0.974 |
39DAP/reference | 1.03796 | 0.09 |
41DAP/reference | 0.94546 | 0.06 |
42DAP/reference | 1.02514 | 0.534 |
43DAP/reference | 0.99782 | 0.727 |
47DAP/reference | 0.92245 | 0.222 |
52DAP/reference | 0.99644 | 0.74 |
57DAP/reference | 0.97014 | 0.302 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.05498 | 0.343 |
17DAP/reference | 0.91815 | 0.176 |
27DAP/reference | 0.8567 | 0.097 |
39DAP/reference | 0.85755 | 0.083 |
41DAP/reference | 0.89713 | 0.063 |
42DAP/reference | 0.88356 | 0.212 |
43DAP/reference | 0.987 | 0.681 |
47DAP/reference | 1.04346 | 0.621 |
52DAP/reference | 0.92964 | 0.086 |
57DAP/reference | 0.99191 | 0.754 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97043 | 0.147 |
17DAP/reference | 1.07252 | 0.558 |
27DAP/reference | 0.99514 | 0.691 |
39DAP/reference | 0.99658 | 0.819 |
41DAP/reference | 0.9804 | 0.331 |
42DAP/reference | 0.96926 | 0.361 |
43DAP/reference | 0.9385 | 0.237 |
47DAP/reference | 0.95405 | 0.396 |
52DAP/reference | 0.99433 | 0.871 |
57DAP/reference | 0.85487 | 0.059 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.98802 | 1 |
26DAP/20DAP | 0.97786 | 1 |
34DAP/26DAP | 1.14258 | 0.819 |
51DAP/34DAP | 0.9651 | 0.727 |
52DAP/51DAP | 1.01854 | 0.783 |
53DAP/52DAP | 0.97983 | 0.902 |
55DAP/53DAP | 0.94591 | 0.592 |
57DAP/55DAP | 0.99471 | 0.955 |
62DAP/57DAP | 0.96319 | 0.871 |
68DAP/62DAP | 0.78215 | 0.314 |
68DAP/14DAP | 1.0058 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.08967 | 0.081 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.86127 | 0.371 |
Mature Green Tomato/Ripe Tomato | 0.9471 | 0.66 |
Immature Eggplant/Mature Eggplant | 1.02255 | 0.683 |
Ripe Pepper/Ripe Tomato | 0.88519 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.7955 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.93255 | 0.944 |
1-1-2/M82 | 0.88599 | 0.958 |
12-2/M82 | 0.96055 | 0.862 |
12-4/M82 | 0.97414 | 0.619 |
1-3/M82 | 1.09291 | 0.232 |
2-1-1/M82 | 0.99905 | 1 |
2-1/M82 | 1.01067 | |
2-6/M82 | 0.94784 | 1 |
3-2/M82 | 0.99926 | 1 |
4-1-1/M82 | 1.04709 | 1 |
4-1/M82 | 0.85806 | 0.867 |
4-3-2/M82 | 0.97623 | 1 |
4-3/M82 | 0.9412 | 0.72 |
5-3/M82 | 0.98768 | 1 |
6-2/M82 | 1.00685 | 1 |
6-3/M82 | 0.99954 | 1 |
7-1/M82 | 0.9633 | 0.803 |
7-2/M82 | 1.12013 | 1 |
9-3-2/M82 | 0.95259 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.06749 | 0.788 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.02486 | 1 |
IL12-4/WTpooled | 1.70687 | 0.48 |
IL1-4/WTpooled | 0.96694 | |
WT/WTpooled | 1.06702 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.14944 | 0.699 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.11819 | 0.774 |
DC3000/delta hrp 6h | 1.33112 | 1 |
DC3000/delta hrp 12h | 0.84204 | 1 |
DC3000/delta hrp 24h | 1.01881 | 0.797 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.11666 | 0.042 |
DC3000 delta B/DC3000 delta AB | 1.05615 | 0.516 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.00315 | 1 |
Exp 36h | 1.14551 | 1 |
Exp 60h | 1.19791 | 0.399 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.01061 | 1 |
Var 0h | 0.99185 | 1 |
Var 12h I row2-row1 | 1.11162 | 0.254 |
Var 12h NI row2-row1 | 1.05817 | 1 |
Var 36h I row2-row1 | 0.97319 | 1 |
Var 36h NI row2-row1 | 0.86685 | 0.584 |
Var 60h I row2-row1 | 1.03676 | 0.562 |
Var 60h NI row2-row1 | 1.02121 | 1 |
Time course 0hI-0hNI | 1.08408 | 0.833 |
Time course 12hI-12hNI | 1.06112 | 0.741 |
Time course 36hI-36hNI | 1.19184 | 0.025 |
Time course 60hI-60hNI | 1.79123 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.94818 | 0.324 |
transgenic ySAMdc/azygous control (breaker) | 0.93275 | 0.251 |
transgenic ySAMdc/azygous control (red) | 1.01192 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.01632 | 0.247 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.64826 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.83203 | 0.172 |
Manapal/WT (break) | 0.90735 | 1 |
Manapal/WT (red) | 0.755 | 0.199 |
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