Expression of 1-1-6.3.13.20

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.917880.568
27DAP/17DAP1.013491
39DAP/27DAP1.137670.774
41DAP/39DAP1.07090.822
42DAP/41DAP1.201430.92
43DAP/42DAP0.98870.925
47DAP/43DAP0.950920.746
52DAP/47DAP1.176140.983
57DAP/52DAP1.08060.963

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.95150.336
17DAP/reference0.967360.448
27DAP/reference0.968920.444
39DAP/reference0.942810.541
41DAP/reference0.956990.434
42DAP/reference0.946090.05
43DAP/reference0.987070.763
47DAP/reference0.898160.009
52DAP/reference0.840910.025
57DAP/reference0.888150.082

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.03980.63
27DAP/17DAP0.954230.446
39DAP/27DAP1.017610.707
41DAP/39DAP1.077290.663
42DAP/41DAP0.956710.612
43DAP/42DAP0.9640.522
47DAP/43DAP0.995840.99
52DAP/47DAP1.006950.979
57DAP/52DAP1.056390.674
57DAP/7DAP1.126620.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.035870.676
17DAP/reference1.018650.525
27DAP/reference1.030430.453
39DAP/reference1.049580.096
41DAP/reference1.043370.491
42DAP/reference1.028390.686
43DAP/reference0.988330.502
47DAP/reference0.998521
52DAP/reference1.155630.352
57DAP/reference1.06260.082

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.999040.97
17DAP/reference0.973980.347
27DAP/reference0.99180.619
39DAP/reference0.91960.147
41DAP/reference0.941120.068
42DAP/reference0.913620.042
43DAP/reference0.985020.67
47DAP/reference0.938050.116
52DAP/reference0.924340.066
57DAP/reference0.928460.135

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.015080.846
17DAP/reference0.959880.407
27DAP/reference0.946780.119
39DAP/reference1.035720.33
41DAP/reference0.95210.512
42DAP/reference0.969140.552
43DAP/reference0.973970.449
47DAP/reference0.989850.61
52DAP/reference1.005190.99
57DAP/reference0.8570.019

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.062220.966
26DAP/20DAP1.115460.555
34DAP/26DAP0.945680.848
51DAP/34DAP1.003561
52DAP/51DAP1.072990.431
53DAP/52DAP1.001911
55DAP/53DAP0.990930.894
57DAP/55DAP0.97780.88
62DAP/57DAP1.043611
68DAP/62DAP1.05030.926
68DAP/14DAP1.070291

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.113760.347

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.081890.113
Mature Green Tomato/Ripe Tomato1.3873
Immature Eggplant/Mature Eggplant0.875990.159
Ripe Pepper/Ripe Tomato1.104661
Mature Eggplant/Ripe Tomato0.780880.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.925890.934
1-1-2/M820.785591
12-2/M820.923960.74
12-4/M820.936531
1-3/M821.080081
2-1-1/M820.994341
2-1/M821.006631
2-6/M820.952961
3-2/M821.022330.967
4-1-1/M821.138470.977
4-1/M820.984911
4-3-2/M821.072930.508
4-3/M820.936040.72
5-3/M821.001771
6-2/M821.061171
6-3/M820.999091
7-1/M820.89951
7-2/M820.974681
9-3-2/M821.056981

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.01204
IL2-6/WTpooled0.881471
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.149551
IL12-4/WTpooled0.965650.71
IL1-4/WTpooled1.073141
WT/WTpooled0.947021

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.205220.479

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.001021
DC3000/delta hrp 6h1.014551
DC3000/delta hrp 12h1.139541
DC3000/delta hrp 24h0.957740.682

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.035970.333
DC3000 delta B/DC3000 delta AB1.004250.771

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.860571
Exp 36h1.294881
Exp 60h1.136911

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.996261
Var 0h0.971221
Var 12h I row2-row11.145870.272
Var 12h NI row2-row11.14571
Var 36h I row2-row11.063361
Var 36h NI row2-row10.807420.347
Var 60h I row2-row11.036621
Var 60h NI row2-row10.991521
Time course 0hI-0hNI0.98240.943
Time course 12hI-12hNI1.036080.756
Time course 36hI-36hNI1.217160.044
Time course 60hI-60hNI1.582770.012

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.029531
transgenic ySAMdc/azygous control (breaker)1.784460.178
transgenic ySAMdc/azygous control (red)1.282450.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.038070.119

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.893810.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.70591
Manapal/WT (break)0.741821
Manapal/WT (red)1.711190.164