Expression of 1-1-6.3.13.20
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.91788 | 0.568 |
27DAP/17DAP | 1.01349 | 1 |
39DAP/27DAP | 1.13767 | 0.774 |
41DAP/39DAP | 1.0709 | 0.822 |
42DAP/41DAP | 1.20143 | 0.92 |
43DAP/42DAP | 0.9887 | 0.925 |
47DAP/43DAP | 0.95092 | 0.746 |
52DAP/47DAP | 1.17614 | 0.983 |
57DAP/52DAP | 1.0806 | 0.963 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.9515 | 0.336 |
17DAP/reference | 0.96736 | 0.448 |
27DAP/reference | 0.96892 | 0.444 |
39DAP/reference | 0.94281 | 0.541 |
41DAP/reference | 0.95699 | 0.434 |
42DAP/reference | 0.94609 | 0.05 |
43DAP/reference | 0.98707 | 0.763 |
47DAP/reference | 0.89816 | 0.009 |
52DAP/reference | 0.84091 | 0.025 |
57DAP/reference | 0.88815 | 0.082 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.0398 | 0.63 |
27DAP/17DAP | 0.95423 | 0.446 |
39DAP/27DAP | 1.01761 | 0.707 |
41DAP/39DAP | 1.07729 | 0.663 |
42DAP/41DAP | 0.95671 | 0.612 |
43DAP/42DAP | 0.964 | 0.522 |
47DAP/43DAP | 0.99584 | 0.99 |
52DAP/47DAP | 1.00695 | 0.979 |
57DAP/52DAP | 1.05639 | 0.674 |
57DAP/7DAP | 1.12662 | 0.365 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.03587 | 0.676 |
17DAP/reference | 1.01865 | 0.525 |
27DAP/reference | 1.03043 | 0.453 |
39DAP/reference | 1.04958 | 0.096 |
41DAP/reference | 1.04337 | 0.491 |
42DAP/reference | 1.02839 | 0.686 |
43DAP/reference | 0.98833 | 0.502 |
47DAP/reference | 0.99852 | 1 |
52DAP/reference | 1.15563 | 0.352 |
57DAP/reference | 1.0626 | 0.082 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99904 | 0.97 |
17DAP/reference | 0.97398 | 0.347 |
27DAP/reference | 0.9918 | 0.619 |
39DAP/reference | 0.9196 | 0.147 |
41DAP/reference | 0.94112 | 0.068 |
42DAP/reference | 0.91362 | 0.042 |
43DAP/reference | 0.98502 | 0.67 |
47DAP/reference | 0.93805 | 0.116 |
52DAP/reference | 0.92434 | 0.066 |
57DAP/reference | 0.92846 | 0.135 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.01508 | 0.846 |
17DAP/reference | 0.95988 | 0.407 |
27DAP/reference | 0.94678 | 0.119 |
39DAP/reference | 1.03572 | 0.33 |
41DAP/reference | 0.9521 | 0.512 |
42DAP/reference | 0.96914 | 0.552 |
43DAP/reference | 0.97397 | 0.449 |
47DAP/reference | 0.98985 | 0.61 |
52DAP/reference | 1.00519 | 0.99 |
57DAP/reference | 0.857 | 0.019 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.06222 | 0.966 |
26DAP/20DAP | 1.11546 | 0.555 |
34DAP/26DAP | 0.94568 | 0.848 |
51DAP/34DAP | 1.00356 | 1 |
52DAP/51DAP | 1.07299 | 0.431 |
53DAP/52DAP | 1.00191 | 1 |
55DAP/53DAP | 0.99093 | 0.894 |
57DAP/55DAP | 0.9778 | 0.88 |
62DAP/57DAP | 1.04361 | 1 |
68DAP/62DAP | 1.0503 | 0.926 |
68DAP/14DAP | 1.07029 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.11376 | 0.347 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.08189 | 0.113 |
Mature Green Tomato/Ripe Tomato | 1.3873 | |
Immature Eggplant/Mature Eggplant | 0.87599 | 0.159 |
Ripe Pepper/Ripe Tomato | 1.10466 | 1 |
Mature Eggplant/Ripe Tomato | 0.78088 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.92589 | 0.934 |
1-1-2/M82 | 0.78559 | 1 |
12-2/M82 | 0.92396 | 0.74 |
12-4/M82 | 0.93653 | 1 |
1-3/M82 | 1.08008 | 1 |
2-1-1/M82 | 0.99434 | 1 |
2-1/M82 | 1.00663 | 1 |
2-6/M82 | 0.95296 | 1 |
3-2/M82 | 1.02233 | 0.967 |
4-1-1/M82 | 1.13847 | 0.977 |
4-1/M82 | 0.98491 | 1 |
4-3-2/M82 | 1.07293 | 0.508 |
4-3/M82 | 0.93604 | 0.72 |
5-3/M82 | 1.00177 | 1 |
6-2/M82 | 1.06117 | 1 |
6-3/M82 | 0.99909 | 1 |
7-1/M82 | 0.8995 | 1 |
7-2/M82 | 0.97468 | 1 |
9-3-2/M82 | 1.05698 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.01204 | |
IL2-6/WTpooled | 0.88147 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.14955 | 1 |
IL12-4/WTpooled | 0.96565 | 0.71 |
IL1-4/WTpooled | 1.07314 | 1 |
WT/WTpooled | 0.94702 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.20522 | 0.479 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.00102 | 1 |
DC3000/delta hrp 6h | 1.01455 | 1 |
DC3000/delta hrp 12h | 1.13954 | 1 |
DC3000/delta hrp 24h | 0.95774 | 0.682 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.03597 | 0.333 |
DC3000 delta B/DC3000 delta AB | 1.00425 | 0.771 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.86057 | 1 |
Exp 36h | 1.29488 | 1 |
Exp 60h | 1.13691 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99626 | 1 |
Var 0h | 0.97122 | 1 |
Var 12h I row2-row1 | 1.14587 | 0.272 |
Var 12h NI row2-row1 | 1.1457 | 1 |
Var 36h I row2-row1 | 1.06336 | 1 |
Var 36h NI row2-row1 | 0.80742 | 0.347 |
Var 60h I row2-row1 | 1.03662 | 1 |
Var 60h NI row2-row1 | 0.99152 | 1 |
Time course 0hI-0hNI | 0.9824 | 0.943 |
Time course 12hI-12hNI | 1.03608 | 0.756 |
Time course 36hI-36hNI | 1.21716 | 0.044 |
Time course 60hI-60hNI | 1.58277 | 0.012 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.02953 | 1 |
transgenic ySAMdc/azygous control (breaker) | 1.78446 | 0.178 |
transgenic ySAMdc/azygous control (red) | 1.28245 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.03807 | 0.119 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.89381 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.7059 | 1 |
Manapal/WT (break) | 0.74182 | 1 |
Manapal/WT (red) | 1.71119 | 0.164 |
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