Expression of 1-1-6.3.13.21
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.90822 | 0.445 |
27DAP/17DAP | 0.8934 | 0.753 |
39DAP/27DAP | 1.117 | 0.841 |
41DAP/39DAP | 0.96643 | 0.852 |
42DAP/41DAP | 1.08366 | 0.882 |
43DAP/42DAP | 0.91285 | 0.829 |
47DAP/43DAP | 0.92608 | 0.724 |
52DAP/47DAP | 1.10462 | 0.973 |
57DAP/52DAP | 1.03448 | 1 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.03136 | 0.928 |
17DAP/reference | 0.99732 | 0.957 |
27DAP/reference | 0.94706 | 0.385 |
39DAP/reference | 1.07111 | 0.514 |
41DAP/reference | 0.9496 | 0.434 |
42DAP/reference | 0.99417 | 0.547 |
43DAP/reference | 1.00145 | 0.942 |
47DAP/reference | 0.95774 | 0.137 |
52DAP/reference | 0.87113 | 0.062 |
57DAP/reference | 0.89907 | 0.131 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.02246 | 0.858 |
27DAP/17DAP | 1.0045 | 1 |
39DAP/27DAP | 1.00976 | 0.799 |
41DAP/39DAP | 1.03305 | 0.807 |
42DAP/41DAP | 1.01985 | 0.916 |
43DAP/42DAP | 0.97929 | 0.684 |
47DAP/43DAP | 0.97339 | 0.796 |
52DAP/47DAP | 0.98615 | 0.925 |
57DAP/52DAP | 1.00315 | 1 |
57DAP/7DAP | 1.01547 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.03776 | 0.638 |
17DAP/reference | 0.98791 | 0.518 |
27DAP/reference | 0.96991 | 0.248 |
39DAP/reference | 1.02688 | 0.538 |
41DAP/reference | 0.9738 | 0.357 |
42DAP/reference | 0.90779 | 0.02 |
43DAP/reference | 0.92018 | 0.22 |
47DAP/reference | 0.99054 | 0.671 |
52DAP/reference | 0.99111 | 0.679 |
57DAP/reference | 0.99452 | 0.694 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.03044 | 0.679 |
17DAP/reference | 0.99346 | 0.548 |
27DAP/reference | 1.05262 | 0.86 |
39DAP/reference | 0.99118 | 0.586 |
41DAP/reference | 0.92257 | 0.056 |
42DAP/reference | 0.95336 | 0.212 |
43DAP/reference | 0.96535 | 0.45 |
47DAP/reference | 0.94815 | 0.061 |
52DAP/reference | 0.96512 | 0.171 |
57DAP/reference | 0.90543 | 0.058 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.06804 | 0.244 |
17DAP/reference | 0.98721 | 0.751 |
27DAP/reference | 0.94058 | 0.038 |
39DAP/reference | 1.0332 | 0.546 |
41DAP/reference | 1.00688 | 1 |
42DAP/reference | 0.92085 | 0.22 |
43DAP/reference | 0.95032 | 0.15 |
47DAP/reference | 1.00989 | 1 |
52DAP/reference | 1.00035 | 0.946 |
57DAP/reference | 0.87211 | 0.044 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.96909 | 1 |
26DAP/20DAP | 0.99874 | 1 |
34DAP/26DAP | 1.0019 | 1 |
51DAP/34DAP | 1.01764 | 0.795 |
52DAP/51DAP | 0.97893 | 1 |
53DAP/52DAP | 1.04248 | 0.882 |
55DAP/53DAP | 0.95837 | 0.725 |
57DAP/55DAP | 0.83587 | 0.452 |
62DAP/57DAP | 0.96585 | |
68DAP/62DAP | 1.02978 | 0.834 |
68DAP/14DAP | 1.19465 | 0.656 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.02503 | 0.821 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.97772 | 0.783 |
Mature Green Tomato/Ripe Tomato | 1.25789 | |
Immature Eggplant/Mature Eggplant | 1.13543 | 0.058 |
Ripe Pepper/Ripe Tomato | 1.18303 | 1 |
Mature Eggplant/Ripe Tomato | 1.21261 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.89619 | 0.69 |
1-1-2/M82 | 0.83087 | 1 |
12-2/M82 | 0.91001 | 0.535 |
12-4/M82 | 1.09265 | 1 |
1-3/M82 | 1.0604 | 1 |
2-1-1/M82 | 0.96715 | 1 |
2-1/M82 | 0.9975 | 1 |
2-6/M82 | 0.89025 | 1 |
3-2/M82 | 1.02715 | 0.967 |
4-1-1/M82 | 1.02334 | 1 |
4-1/M82 | 0.8932 | 1 |
4-3-2/M82 | 1.01799 | 0.508 |
4-3/M82 | 0.94635 | 0.72 |
5-3/M82 | 0.94602 | 0.642 |
6-2/M82 | 0.99865 | 1 |
6-3/M82 | 0.96488 | 1 |
7-1/M82 | 0.98223 | 1 |
7-2/M82 | 0.8705 | 0.599 |
9-3-2/M82 | 1.4379 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.95274 | |
IL2-6/WTpooled | 0.61727 | 0.348 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.44351 | 0.362 |
IL12-4/WTpooled | 1.21725 | 0.737 |
IL1-4/WTpooled | 1.0683 | 1 |
WT/WTpooled | 1.02982 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.21591 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.01703 | 0.921 |
DC3000/delta hrp 6h | 0.95081 | 0.95 |
DC3000/delta hrp 12h | 1.01697 | 1 |
DC3000/delta hrp 24h | 1.04451 | 0.62 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.16305 | 0.333 |
DC3000 delta B/DC3000 delta AB | 1.01216 | 0.738 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.82448 | 1 |
Exp 36h | 1.19912 | 0.693 |
Exp 60h | 0.95938 | 0.994 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.97868 | 1 |
Var 0h | 0.48376 | 1 |
Var 12h I row2-row1 | 1.27225 | 0.198 |
Var 12h NI row2-row1 | 1.06546 | 0.34 |
Var 36h I row2-row1 | 0.86217 | 0.805 |
Var 36h NI row2-row1 | 0.90623 | 0.478 |
Var 60h I row2-row1 | 1.04147 | 1 |
Var 60h NI row2-row1 | 1.03213 | 1 |
Time course 0hI-0hNI | 1.02232 | 1 |
Time course 12hI-12hNI | 1.06437 | 0.734 |
Time course 36hI-36hNI | 1.20229 | 0.07 |
Time course 60hI-60hNI | 1.92804 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.00304 | 1 |
transgenic ySAMdc/azygous control (breaker) | 1.51509 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.20941 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.04415 | 0.105 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.93315 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.93368 | 1 |
Manapal/WT (break) | 1.09678 | 1 |
Manapal/WT (red) | 0.93127 | 0.607 |
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