Expression of 1-1-6.3.13.9
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.9488 | 0.671 |
27DAP/17DAP | 1.26199 | 0.732 |
39DAP/27DAP | 0.86598 | 0.399 |
41DAP/39DAP | 1.17967 | 0.298 |
42DAP/41DAP | 0.87784 | 1 |
43DAP/42DAP | 0.96828 | 0.877 |
47DAP/43DAP | 0.99944 | 0.953 |
52DAP/47DAP | 0.80148 | 0.471 |
57DAP/52DAP | 1.12702 | 0.859 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.76929 | 0.049 |
17DAP/reference | 0.81494 | 0.011 |
27DAP/reference | 0.88279 | 0.07 |
39DAP/reference | 0.9063 | 0.174 |
41DAP/reference | 0.67953 | 0.008 |
42DAP/reference | 0.79892 | 0.002 |
43DAP/reference | 0.90979 | 0.148 |
47DAP/reference | 0.87618 | 0.116 |
52DAP/reference | 1.15477 | 0.167 |
57DAP/reference | 1.29328 | 0.021 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.88465 | 0.336 |
27DAP/17DAP | 1.09158 | 0.694 |
39DAP/27DAP | 1.05348 | 0.677 |
41DAP/39DAP | 0.93955 | 0.696 |
42DAP/41DAP | 0.99935 | 0.887 |
43DAP/42DAP | 1.12131 | 0.192 |
47DAP/43DAP | 1.03206 | 0.837 |
52DAP/47DAP | 0.9547 | 0.797 |
57DAP/52DAP | 0.97477 | 0.745 |
57DAP/7DAP | 1.00354 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.30351 | 0.035 |
17DAP/reference | 1.17272 | 0.064 |
27DAP/reference | 1.08455 | 0.974 |
39DAP/reference | 1.17791 | 0.044 |
41DAP/reference | 1.2014 | 0.46 |
42DAP/reference | 0.98484 | 0.554 |
43DAP/reference | 1.15751 | 0.083 |
47DAP/reference | 0.97842 | 0.671 |
52DAP/reference | 0.8445 | 0.278 |
57DAP/reference | 0.99868 | 0.648 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.79919 | 0.016 |
17DAP/reference | 0.72268 | 0.01 |
27DAP/reference | 0.75783 | 0.021 |
39DAP/reference | 0.90349 | 0.156 |
41DAP/reference | 0.95628 | 0.242 |
42DAP/reference | 0.88672 | 0.108 |
43DAP/reference | 0.68191 | 0.003 |
47DAP/reference | 0.87643 | 0.099 |
52DAP/reference | 0.88857 | 0.01 |
57DAP/reference | 0.7369 | 0.007 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.1207 | 0.287 |
17DAP/reference | 0.98686 | 0.727 |
27DAP/reference | 1.20189 | 0.03 |
39DAP/reference | 1.08877 | 0.563 |
41DAP/reference | 0.99205 | 0.682 |
42DAP/reference | 1.01456 | 1 |
43DAP/reference | 1.01414 | 0.858 |
47DAP/reference | 0.97689 | 0.509 |
52DAP/reference | 2.8506 | 0.289 |
57DAP/reference | 1.40093 | 0.094 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.12211 | 0.966 |
26DAP/20DAP | 1.18767 | 0.594 |
34DAP/26DAP | 0.98104 | 0.988 |
51DAP/34DAP | 1.21817 | 0.159 |
52DAP/51DAP | 0.93596 | 1 |
53DAP/52DAP | 1.00237 | 1 |
55DAP/53DAP | 0.84465 | 0.163 |
57DAP/55DAP | 1.06769 | 0.969 |
62DAP/57DAP | 0.79951 | 0.28 |
68DAP/62DAP | 1.45838 | 0.124 |
68DAP/14DAP | 1.51079 | 0.541 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.77141 | 0.028 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.80453 | 0.276 |
Mature Green Tomato/Ripe Tomato | 0.91698 | 0.611 |
Immature Eggplant/Mature Eggplant | 1.05621 | 0.659 |
Ripe Pepper/Ripe Tomato | 1.48778 | 0.256 |
Mature Eggplant/Ripe Tomato | 0.96348 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.97992 | 0.961 |
1-1-2/M82 | 1.0926 | 1 |
12-2/M82 | 0.95616 | 0.955 |
12-4/M82 | 0.83879 | 0.619 |
1-3/M82 | 0.99919 | |
2-1-1/M82 | 1.08659 | 0.764 |
2-1/M82 | 1.19375 | 1 |
2-6/M82 | 1.06262 | 1 |
3-2/M82 | 1.03555 | 0.967 |
4-1-1/M82 | 1.05546 | 1 |
4-1/M82 | 0.89607 | 1 |
4-3-2/M82 | 0.94267 | 1 |
4-3/M82 | 1.05214 | 1 |
5-3/M82 | 1.13837 | 0.496 |
6-2/M82 | 0.87451 | 1 |
6-3/M82 | 1.02801 | 1 |
7-1/M82 | 0.82051 | 0.509 |
7-2/M82 | 1.41303 | 0.385 |
9-3-2/M82 | 1.07968 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.94011 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.92796 | 1 |
IL12-4/WTpooled | 1.12245 | 0.737 |
IL1-4/WTpooled | 1.07963 | 1 |
WT/WTpooled | 0.96028 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.54673 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.07389 | 0.921 |
DC3000/delta hrp 6h | 0.97975 | 0.95 |
DC3000/delta hrp 12h | 1.02795 | 1 |
DC3000/delta hrp 24h | 1.24393 | 0.118 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.52993 | 0.042 |
DC3000 delta B/DC3000 delta AB | 1.51843 | 0.101 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.96224 | 1 |
Exp 36h | 1.07248 | 1 |
Exp 60h | 1.26371 | 0.283 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.07103 | 1 |
Var 0h | 0.99249 | 1 |
Var 12h I row2-row1 | 1.1006 | 0.692 |
Var 12h NI row2-row1 | 1.11103 | 1 |
Var 36h I row2-row1 | 1.1767 | 0.305 |
Var 36h NI row2-row1 | 0.76018 | 0.225 |
Var 60h I row2-row1 | 0.75707 | 0.306 |
Var 60h NI row2-row1 | 0.93008 | 0.516 |
Time course 0hI-0hNI | 1.02254 | 0.852 |
Time course 12hI-12hNI | 0.99863 | 1 |
Time course 36hI-36hNI | 1.33341 | 0.005 |
Time course 60hI-60hNI | 2.92736 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.97443 | 0.428 |
transgenic ySAMdc/azygous control (breaker) | 1.24657 | 0.172 |
transgenic ySAMdc/azygous control (red) | 1.05824 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.95961 | 0.153 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.76368 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.07313 | 1 |
Manapal/WT (break) | 0.89063 | 1 |
Manapal/WT (red) | 0.67597 | 0.181 |
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