Tomato Functional Genomics Database (TFGD)

Expression of 1-1-6.3.14.14

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.2186	0.656
27DAP/17DAP	0.58139	0.191
39DAP/27DAP	0.71025	0.399
41DAP/39DAP	0.62457	0.081
42DAP/41DAP	0.91727	1
43DAP/42DAP	0.96309	0.895
47DAP/43DAP	1.5703	0.856
52DAP/47DAP	0.91353	0.657
57DAP/52DAP	0.97786	0.957

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.64744	0.05
17DAP/reference	0.49162	0.008
27DAP/reference	0.51501	0.02
39DAP/reference	0.45306	0.035
41DAP/reference	0.4623	0.011
42DAP/reference	0.93944	0.218
43DAP/reference	0.29533
47DAP/reference	0.95191	0.445
52DAP/reference	0.42681
57DAP/reference	0.67975	0.277

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.56379	0.176
27DAP/17DAP	0.92501
39DAP/27DAP	N/A	N/A
41DAP/39DAP	0.89534
42DAP/41DAP	2.90922
43DAP/42DAP	1.36481	0.413
47DAP/43DAP	1.14501	0.998
52DAP/47DAP	1.17739	0.624
57DAP/52DAP	N/A	N/A
57DAP/7DAP	0.93705

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.24597	0.1
17DAP/reference	0.77209	0.013
27DAP/reference	0.56683	0.01
39DAP/reference	0.41767	0.011
41DAP/reference	0.32925	0.01
42DAP/reference	0.27345	0.01
43DAP/reference	0.23708	0.009
47DAP/reference	0.25886	0.008
52DAP/reference	0.34779	0.011
57DAP/reference	0.3501	0.006

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.94867	0.532
17DAP/reference	1.00808	0.728
27DAP/reference	1.09052	0.888
39DAP/reference	0.64105	0.093
41DAP/reference	1.12639	1
42DAP/reference	0.93567
43DAP/reference	0.25007	0.007
47DAP/reference	0.5145
52DAP/reference	0.33714	0.004
57DAP/reference	0.30078	0.002

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	2.17159	0.015
17DAP/reference	2.10419	0.111
27DAP/reference	1.41648	0.056
39DAP/reference	1.08967	0.752
41DAP/reference	0.74958	0.037
42DAP/reference	0.72094	0.134
43DAP/reference	0.51395	0.017
47DAP/reference	0.49533	0.072
52DAP/reference	1.81562	0.908
57DAP/reference	1.17629

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	1.86742	1
26DAP/20DAP	0.44091
34DAP/26DAP	N/A	N/A
51DAP/34DAP	1.66191
52DAP/51DAP	1.48886	0.396
53DAP/52DAP	2.32626	0.882
55DAP/53DAP	1.27059
57DAP/55DAP	0.27224
62DAP/57DAP	1.63255	0.445
68DAP/62DAP	N/A	N/A
68DAP/14DAP	N/A	N/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	2.41977	0.072

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	N/A	N/A
Immature Eggplant/Mature Eggplant	N/A	N/A
Ripe Pepper/Ripe Tomato	N/A	N/A
Mature Eggplant/Ripe Tomato	N/A	N/A

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	N/A	N/A
1-1-2/M82	N/A	N/A
12-2/M82	N/A	N/A
12-4/M82	N/A	N/A
1-3/M82	N/A	N/A
2-1-1/M82	N/A	N/A
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	N/A	N/A
4-1-1/M82	N/A	N/A
4-1/M82	N/A	N/A
4-3-2/M82	N/A	N/A
4-3/M82	N/A	N/A
5-3/M82	N/A	N/A
6-2/M82	N/A	N/A
6-3/M82	N/A	N/A
7-1/M82	N/A	N/A
7-2/M82	N/A	N/A
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	1.35237	0.365
IL2-6/WTpooled	1.06843	1
IL7-5/WTpooled	2.10975	0.75
IL7-3/WTpooled	1.23409	1
IL12-4/WTpooled	1.08697	0.646
IL1-4/WTpooled	1.18757	1
WT/WTpooled	1.00763	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	N/A	N/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	N/A	N/A
DC3000/delta hrp 6h	N/A	N/A
DC3000/delta hrp 12h	1.48227	1
DC3000/delta hrp 24h	N/A	N/A

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	N/A	N/A
DC3000 delta B/DC3000 delta AB	N/A	N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	N/A	N/A
Exp 36h	N/A	N/A
Exp 60h	N/A	N/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	N/A	N/A
Var 0h	0.96757	1
Var 12h I row2-row1	0.8549
Var 12h NI row2-row1	0.91707	0.906
Var 36h I row2-row1	0.83089	0.438
Var 36h NI row2-row1	1.10963	1
Var 60h I row2-row1	1.19607	0.25
Var 60h NI row2-row1	0.76825	0.818
Time course 0hI-0hNI	1.0339	1
Time course 12hI-12hNI	0.87483	0.104
Time course 36hI-36hNI	0.89163	0.494
Time course 60hI-60hNI	0.11493	0.005

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	N/A	N/A
transgenic ySAMdc/azygous control (breaker)	N/A	N/A
transgenic ySAMdc/azygous control (red)	N/A	N/A

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	N/A	N/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	N/A	N/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	N/A	N/A
Manapal/WT (break)	N/A	N/A
Manapal/WT (red)	N/A	N/A