Expression of 1-1-6.3.14.15
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.93821 | 0.652 |
27DAP/17DAP | 0.87181 | 0.686 |
39DAP/27DAP | 1.34032 | 0.365 |
41DAP/39DAP | 0.86594 | 0.485 |
42DAP/41DAP | 1.19115 | 0.843 |
43DAP/42DAP | 0.94449 | 0.827 |
47DAP/43DAP | 0.89308 | 0.671 |
52DAP/47DAP | 1.03756 | 0.907 |
57DAP/52DAP | 0.97759 | 0.971 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.35266 | 0.045 |
17DAP/reference | 0.96154 | 0.567 |
27DAP/reference | 0.97521 | 0.668 |
39DAP/reference | 1.23329 | 0.57 |
41DAP/reference | 1.18735 | 0.516 |
42DAP/reference | 1.47764 | 0.001 |
43DAP/reference | 1.01492 | 1 |
47DAP/reference | 1.30996 | 0.003 |
52DAP/reference | 0.91274 | 0.275 |
57DAP/reference | 1.24856 | 0.03 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.10666 | 0.121 |
27DAP/17DAP | 0.95868 | 0.748 |
39DAP/27DAP | 0.93775 | 0.616 |
41DAP/39DAP | 1.06279 | 0.876 |
42DAP/41DAP | 1.02449 | 0.991 |
43DAP/42DAP | 1.00291 | 1 |
47DAP/43DAP | 1.01768 | 0.892 |
52DAP/47DAP | 0.92132 | 0.482 |
57DAP/52DAP | 0.96155 | 0.494 |
57DAP/7DAP | 0.97883 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.59074 | 0.028 |
17DAP/reference | 1.31504 | 0.011 |
27DAP/reference | 1.38812 | 0.012 |
39DAP/reference | 1.41263 | 0.005 |
41DAP/reference | 1.37984 | 0.014 |
42DAP/reference | 1.64062 | 0.009 |
43DAP/reference | 1.28551 | 0.006 |
47DAP/reference | 1.38737 | 0.031 |
52DAP/reference | 1.79368 | 0.012 |
57DAP/reference | 1.50971 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.85794 | 0.058 |
17DAP/reference | 0.91661 | 0.129 |
27DAP/reference | 1.24131 | 0.254 |
39DAP/reference | 0.93896 | 0.298 |
41DAP/reference | 0.9252 | 0.299 |
42DAP/reference | 1.41338 | 0.03 |
43DAP/reference | 1.07018 | 0.688 |
47DAP/reference | 1.37337 | 0.014 |
52DAP/reference | 0.38813 | 0.003 |
57DAP/reference | 0.49119 | 0.006 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.22259 | 0.101 |
17DAP/reference | 1.11691 | 0.558 |
27DAP/reference | 1.20107 | 0.028 |
39DAP/reference | 1.38624 | 0.009 |
41DAP/reference | 1.45758 | 0.032 |
42DAP/reference | 1.30856 | 0.053 |
43DAP/reference | 1.60237 | 0.022 |
47DAP/reference | 1.1133 | 0.501 |
52DAP/reference | 1.41636 | 0.155 |
57DAP/reference | 1.65117 | 0.019 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.1129 | 0.85 |
26DAP/20DAP | 1.04607 | 0.855 |
34DAP/26DAP | 0.97858 | 0.944 |
51DAP/34DAP | 0.94201 | 0.546 |
52DAP/51DAP | 1.00701 | 0.954 |
53DAP/52DAP | 0.98198 | 0.902 |
55DAP/53DAP | 1.00454 | 0.964 |
57DAP/55DAP | 1.10203 | 0.525 |
62DAP/57DAP | 0.96572 | 0.871 |
68DAP/62DAP | 1.09235 | 0.899 |
68DAP/14DAP | 0.84784 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.25673 | 0.036 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.95434 | 0.648 |
Mature Green Tomato/Ripe Tomato | 1.10575 | 0.632 |
Immature Eggplant/Mature Eggplant | 0.92272 | 0.493 |
Ripe Pepper/Ripe Tomato | 1.02853 | 1 |
Mature Eggplant/Ripe Tomato | 0.99628 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.11434 | 0.877 |
1-1-2/M82 | 1.09639 | 1 |
12-2/M82 | 1.00279 | 1 |
12-4/M82 | 0.95432 | 0.619 |
1-3/M82 | 1.16873 | 0.479 |
2-1-1/M82 | 0.98039 | 1 |
2-1/M82 | 0.95285 | 1 |
2-6/M82 | 1.16075 | 0.405 |
3-2/M82 | 1.03273 | 1 |
4-1-1/M82 | 0.98362 | 1 |
4-1/M82 | 0.97759 | 0.737 |
4-3-2/M82 | 0.98229 | 1 |
4-3/M82 | 1.35032 | 1 |
5-3/M82 | 1.16383 | 1 |
6-2/M82 | 0.79573 | |
6-3/M82 | 1.07696 | 1 |
7-1/M82 | 1.07854 | |
7-2/M82 | 1.00219 | 1 |
9-3-2/M82 | 0.94374 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.89476 | 1 |
IL2-6/WTpooled | 0.59159 | 0.473 |
IL7-5/WTpooled | 0.74601 | 1 |
IL7-3/WTpooled | 1.21109 | 1 |
IL12-4/WTpooled | 0.85405 | 0.566 |
IL1-4/WTpooled | 1.07902 | 1 |
WT/WTpooled | 1.04334 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.05508 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.01697 | 1 |
DC3000/delta hrp 6h | 1.02008 | 1 |
DC3000/delta hrp 12h | 1.09586 | 1 |
DC3000/delta hrp 24h | 0.83562 | 0.087 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.21583 | 0.042 |
DC3000 delta B/DC3000 delta AB | 1.18559 | 0.179 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.03596 | 1 |
Exp 36h | 0.91878 | 0.82 |
Exp 60h | 0.83151 | 0.454 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.97034 | 1 |
Var 0h | 1.17737 | 0.936 |
Var 12h I row2-row1 | 1.02077 | 1 |
Var 12h NI row2-row1 | 0.97093 | 0.906 |
Var 36h I row2-row1 | 0.89904 | 0.805 |
Var 36h NI row2-row1 | 0.87924 | 0.584 |
Var 60h I row2-row1 | 1.66835 | 0.562 |
Var 60h NI row2-row1 | 1.07664 | 0.904 |
Time course 0hI-0hNI | 1.01316 | 0.867 |
Time course 12hI-12hNI | 1.1049 | 0.246 |
Time course 36hI-36hNI | 1.09258 | 0.28 |
Time course 60hI-60hNI | 0.50142 | 0.015 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.95888 | 0.567 |
transgenic ySAMdc/azygous control (breaker) | 1.13991 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.11303 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.85834 | 0.107 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.31124 | 0.233 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.20629 | 0.14 |
Manapal/WT (break) | 1.15528 | 0.381 |
Manapal/WT (red) | 1.20437 | 0.142 |
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