Expression of 1-1-6.3.14.15

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.938210.652
27DAP/17DAP0.871810.686
39DAP/27DAP1.340320.365
41DAP/39DAP0.865940.485
42DAP/41DAP1.191150.843
43DAP/42DAP0.944490.827
47DAP/43DAP0.893080.671
52DAP/47DAP1.037560.907
57DAP/52DAP0.977590.971

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.352660.045
17DAP/reference0.961540.567
27DAP/reference0.975210.668
39DAP/reference1.233290.57
41DAP/reference1.187350.516
42DAP/reference1.477640.001
43DAP/reference1.014921
47DAP/reference1.309960.003
52DAP/reference0.912740.275
57DAP/reference1.248560.03

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.106660.121
27DAP/17DAP0.958680.748
39DAP/27DAP0.937750.616
41DAP/39DAP1.062790.876
42DAP/41DAP1.024490.991
43DAP/42DAP1.002911
47DAP/43DAP1.017680.892
52DAP/47DAP0.921320.482
57DAP/52DAP0.961550.494
57DAP/7DAP0.978831

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.590740.028
17DAP/reference1.315040.011
27DAP/reference1.388120.012
39DAP/reference1.412630.005
41DAP/reference1.379840.014
42DAP/reference1.640620.009
43DAP/reference1.285510.006
47DAP/reference1.387370.031
52DAP/reference1.793680.012
57DAP/reference1.509710.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.857940.058
17DAP/reference0.916610.129
27DAP/reference1.241310.254
39DAP/reference0.938960.298
41DAP/reference0.92520.299
42DAP/reference1.413380.03
43DAP/reference1.070180.688
47DAP/reference1.373370.014
52DAP/reference0.388130.003
57DAP/reference0.491190.006

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.222590.101
17DAP/reference1.116910.558
27DAP/reference1.201070.028
39DAP/reference1.386240.009
41DAP/reference1.457580.032
42DAP/reference1.308560.053
43DAP/reference1.602370.022
47DAP/reference1.11330.501
52DAP/reference1.416360.155
57DAP/reference1.651170.019

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.11290.85
26DAP/20DAP1.046070.855
34DAP/26DAP0.978580.944
51DAP/34DAP0.942010.546
52DAP/51DAP1.007010.954
53DAP/52DAP0.981980.902
55DAP/53DAP1.004540.964
57DAP/55DAP1.102030.525
62DAP/57DAP0.965720.871
68DAP/62DAP1.092350.899
68DAP/14DAP0.847840.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.256730.036

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.954340.648
Mature Green Tomato/Ripe Tomato1.105750.632
Immature Eggplant/Mature Eggplant0.922720.493
Ripe Pepper/Ripe Tomato1.028531
Mature Eggplant/Ripe Tomato0.996281

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.114340.877
1-1-2/M821.096391
12-2/M821.002791
12-4/M820.954320.619
1-3/M821.168730.479
2-1-1/M820.980391
2-1/M820.952851
2-6/M821.160750.405
3-2/M821.032731
4-1-1/M820.983621
4-1/M820.977590.737
4-3-2/M820.982291
4-3/M821.350321
5-3/M821.163831
6-2/M820.79573
6-3/M821.076961
7-1/M821.07854
7-2/M821.002191
9-3-2/M820.943741

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.894761
IL2-6/WTpooled0.591590.473
IL7-5/WTpooled0.746011
IL7-3/WTpooled1.211091
IL12-4/WTpooled0.854050.566
IL1-4/WTpooled1.079021
WT/WTpooled1.043341

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.055081

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.016971
DC3000/delta hrp 6h1.020081
DC3000/delta hrp 12h1.095861
DC3000/delta hrp 24h0.835620.087

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.215830.042
DC3000 delta B/DC3000 delta AB1.185590.179

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.035961
Exp 36h0.918780.82
Exp 60h0.831510.454

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.970341
Var 0h1.177370.936
Var 12h I row2-row11.020771
Var 12h NI row2-row10.970930.906
Var 36h I row2-row10.899040.805
Var 36h NI row2-row10.879240.584
Var 60h I row2-row11.668350.562
Var 60h NI row2-row11.076640.904
Time course 0hI-0hNI1.013160.867
Time course 12hI-12hNI1.10490.246
Time course 36hI-36hNI1.092580.28
Time course 60hI-60hNI0.501420.015

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.958880.567
transgenic ySAMdc/azygous control (breaker)1.139910.248
transgenic ySAMdc/azygous control (red)1.113030.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.858340.107

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.311240.233

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.206290.14
Manapal/WT (break)1.155280.381
Manapal/WT (red)1.204370.142