Expression of 1-1-6.3.14.18

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.928860.77
27DAP/17DAP4.734260.047
39DAP/27DAP1.231360.74
41DAP/39DAP5.716850.691
42DAP/41DAP0.806691
43DAP/42DAP1.531
47DAP/43DAP1.088660.821
52DAP/47DAP1.08350.828
57DAP/52DAP0.73050.839

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.954230.513
17DAP/reference1.064440.653
27DAP/reference0.97040.642
39DAP/reference0.966440.691
41DAP/reference0.946140.341
42DAP/reference1.216190.174
43DAP/reference0.984680.805
47DAP/reference0.977180.535
52DAP/reference0.906030.111
57DAP/reference0.823610.017

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.433310.178
27DAP/17DAP1.09530.932
39DAP/27DAP1.584080.478
41DAP/39DAP0.88368
42DAP/41DAP1.1412
43DAP/42DAP1.81232
47DAP/43DAP0.5189
52DAP/47DAP1.145880.71
57DAP/52DAP0.770330.612
57DAP/7DAPN/AN/A

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.246410.173
17DAP/reference0.957260.447
27DAP/reference1.283770.088
39DAP/reference1.25540.133
41DAP/reference1.380330.017
42DAP/reference1.286520.308
43DAP/reference1.259290.022
47DAP/reference0.9493
52DAP/reference1.457570.043
57DAP/reference1.11280.536

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.85764
17DAP/reference0.60728
27DAP/reference0.723880.304
39DAP/referenceN/AN/A
41DAP/reference1.64748
42DAP/reference3.002720.027
43DAP/reference1.027780.929
47DAP/reference1.07006
52DAP/reference0.67067
57DAP/referenceN/AN/A

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.364530.059
17DAP/reference1.165340.431
27DAP/reference1.45620.062
39DAP/reference1.172590.048
41DAP/reference1.14760.692
42DAP/reference1.358890.065
43DAP/reference1.134780.32
47DAP/reference1.0183
52DAP/reference1.310520.463
57DAP/referenceN/AN/A

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP2.855470.966
26DAP/20DAP1.07048
34DAP/26DAP10.7088
51DAP/34DAP0.771980.513
52DAP/51DAPN/AN/A
53DAP/52DAP1.053310.944
55DAP/53DAP0.876080.563
57DAP/55DAP0.846130.606
62DAP/57DAP1.133891
68DAP/62DAP1.73260.29
68DAP/14DAP1.09594

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.995710.635

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.04682
IL2-6/WTpooled1.213720.584
IL7-5/WTpooled1.10679
IL7-3/WTpooled1.091761
IL12-4/WTpooled1.01240.891
IL1-4/WTpooled1.138511
WT/WTpooled0.953250.873

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0hN/AN/A
DC3000/delta hrp 6h1.24823
DC3000/delta hrp 12hN/AN/A
DC3000/delta hrp 24hN/AN/A

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h1.066020.594
Var 12h I row2-row11.0529
Var 12h NI row2-row11.03847
Var 36h I row2-row10.65742
Var 36h NI row2-row11.074821
Var 60h I row2-row11.194420.502
Var 60h NI row2-row10.77999
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)0.984711
Manapal/WT (red)N/AN/A