Expression of 1-1-6.3.14.20
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.89912 | 0.475 |
27DAP/17DAP | 0.9081 | 0.836 |
39DAP/27DAP | 1.16232 | 0.718 |
41DAP/39DAP | 0.90085 | 0.591 |
42DAP/41DAP | 0.73753 | 0.774 |
43DAP/42DAP | 0.72005 | 0.561 |
47DAP/43DAP | 0.87223 | 0.565 |
52DAP/47DAP | 1.49172 | 0.366 |
57DAP/52DAP | 1.08528 | 0.98 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.22484 | 0.018 |
17DAP/reference | 0.91325 | 0.18 |
27DAP/reference | 0.93267 | 0.385 |
39DAP/reference | 1.06816 | 0.044 |
41DAP/reference | 0.91773 | 0.341 |
42DAP/reference | 0.90999 | 0.02 |
43DAP/reference | 1.02766 | 0.899 |
47DAP/reference | 0.91199 | 0.046 |
52DAP/reference | 0.78898 | 0.033 |
57DAP/reference | 0.84445 | 0.082 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.67581 | 0.043 |
27DAP/17DAP | 1.18862 | 0.187 |
39DAP/27DAP | 0.896 | 0.311 |
41DAP/39DAP | 1.01729 | 0.868 |
42DAP/41DAP | 1.00813 | 0.925 |
43DAP/42DAP | 0.64551 | 0.022 |
47DAP/43DAP | 1.0458 | 0.758 |
52DAP/47DAP | 0.99626 | 0.959 |
57DAP/52DAP | 0.90511 | 0.28 |
57DAP/7DAP | 0.81983 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.9178 | 0.246 |
17DAP/reference | 1.01706 | 1 |
27DAP/reference | 0.92104 | 0.231 |
39DAP/reference | 0.83811 | 0.064 |
41DAP/reference | 0.93719 | 0.394 |
42DAP/reference | 0.88483 | 0.07 |
43DAP/reference | 0.97167 | 0.44 |
47DAP/reference | 0.90852 | 0.222 |
52DAP/reference | 0.90793 | 0.196 |
57DAP/reference | 1.17888 | 0.061 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.07976 | 0.47 |
17DAP/reference | 0.90686 | 0.116 |
27DAP/reference | 0.9728 | 0.467 |
39DAP/reference | 0.81989 | 0.027 |
41DAP/reference | 0.81064 | 0.038 |
42DAP/reference | 0.86422 | 0.121 |
43DAP/reference | 1.01608 | 1 |
47DAP/reference | 0.92689 | 0.246 |
52DAP/reference | 0.88595 | 0.015 |
57DAP/reference | 0.96488 | 0.488 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.09237 | 1 |
17DAP/reference | 1.00371 | 0.855 |
27DAP/reference | 0.93947 | 0.102 |
39DAP/reference | 1.09841 | 0.596 |
41DAP/reference | 0.99089 | 0.682 |
42DAP/reference | 0.74491 | 0.032 |
43DAP/reference | 0.83507 | 0.079 |
47DAP/reference | 0.88718 | 0.097 |
52DAP/reference | 0.93124 | 0.482 |
57DAP/reference | 0.78322 | 0.025 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.94871 | 1 |
26DAP/20DAP | 0.80913 | 0.244 |
34DAP/26DAP | 0.84383 | 0.197 |
51DAP/34DAP | 0.90243 | 0.274 |
52DAP/51DAP | 1.02367 | 1 |
53DAP/52DAP | 1.13717 | 0.261 |
55DAP/53DAP | 1.22602 | 0.415 |
57DAP/55DAP | 1.18859 | 0.424 |
62DAP/57DAP | 0.84583 | 0.162 |
68DAP/62DAP | 1.0368 | 0.914 |
68DAP/14DAP | 0.6208 | 0.121 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.94969 | 0.422 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.99231 | 0.886 |
Mature Green Tomato/Ripe Tomato | 3.34683 | 0.016 |
Immature Eggplant/Mature Eggplant | 1.24998 | 0.065 |
Ripe Pepper/Ripe Tomato | 3.23187 | 0.256 |
Mature Eggplant/Ripe Tomato | 4.44146 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.1407 | 0.409 |
1-1-2/M82 | 1.00396 | 1 |
12-2/M82 | 1.1545 | 1 |
12-4/M82 | 0.96536 | 1 |
1-3/M82 | 0.89464 | 0.501 |
2-1-1/M82 | 0.91266 | 0.784 |
2-1/M82 | 0.8971 | |
2-6/M82 | 1.05227 | 1 |
3-2/M82 | 1.01692 | |
4-1-1/M82 | 0.90771 | 0.668 |
4-1/M82 | 0.99425 | 1 |
4-3-2/M82 | 0.84222 | 0.698 |
4-3/M82 | 1.0269 | 1 |
5-3/M82 | 1.02444 | 1 |
6-2/M82 | 0.83222 | 0.444 |
6-3/M82 | 0.72053 | |
7-1/M82 | N/A | N/A |
7-2/M82 | 1.01396 | 1 |
9-3-2/M82 | 0.91283 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.38491 | 0.395 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.04264 | 1 |
IL12-4/WTpooled | 1.03867 | 0.695 |
IL1-4/WTpooled | 0.86963 | |
WT/WTpooled | 1.04733 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.97145 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.91986 | 0.868 |
DC3000/delta hrp 6h | 1.1224 | 1 |
DC3000/delta hrp 12h | 0.77409 | 1 |
DC3000/delta hrp 24h | 2.09188 | 0.042 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.11883 | 0.355 |
DC3000 delta B/DC3000 delta AB | 0.98254 | 0.892 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.13874 | 1 |
Exp 36h | 0.69094 | 0.449 |
Exp 60h | 0.73289 | 0.251 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00663 | 1 |
Var 0h | 1.05021 | 1 |
Var 12h I row2-row1 | 1.23633 | 0.22 |
Var 12h NI row2-row1 | 0.76006 | 0.443 |
Var 36h I row2-row1 | 0.84522 | 0.805 |
Var 36h NI row2-row1 | 1.04463 | 1 |
Var 60h I row2-row1 | 1.04925 | 0.562 |
Var 60h NI row2-row1 | 1.17306 | 0.904 |
Time course 0hI-0hNI | 0.9843 | 0.962 |
Time course 12hI-12hNI | 0.87012 | 0.105 |
Time course 36hI-36hNI | 0.76432 | 0.023 |
Time course 60hI-60hNI | 0.73052 | 0.026 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.8691 | 0.348 |
transgenic ySAMdc/azygous control (breaker) | 0.74601 | 0.15 |
transgenic ySAMdc/azygous control (red) | 0.81502 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.02698 | 0.1 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.50504 | 0.231 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.02269 | 1 |
Manapal/WT (break) | 0.78034 | 0.333 |
Manapal/WT (red) | 0.79586 | 0.181 |
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