Expression of 1-1-6.3.14.20

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.899120.475
27DAP/17DAP0.90810.836
39DAP/27DAP1.162320.718
41DAP/39DAP0.900850.591
42DAP/41DAP0.737530.774
43DAP/42DAP0.720050.561
47DAP/43DAP0.872230.565
52DAP/47DAP1.491720.366
57DAP/52DAP1.085280.98

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.224840.018
17DAP/reference0.913250.18
27DAP/reference0.932670.385
39DAP/reference1.068160.044
41DAP/reference0.917730.341
42DAP/reference0.909990.02
43DAP/reference1.027660.899
47DAP/reference0.911990.046
52DAP/reference0.788980.033
57DAP/reference0.844450.082

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.675810.043
27DAP/17DAP1.188620.187
39DAP/27DAP0.8960.311
41DAP/39DAP1.017290.868
42DAP/41DAP1.008130.925
43DAP/42DAP0.645510.022
47DAP/43DAP1.04580.758
52DAP/47DAP0.996260.959
57DAP/52DAP0.905110.28
57DAP/7DAP0.819831

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.91780.246
17DAP/reference1.017061
27DAP/reference0.921040.231
39DAP/reference0.838110.064
41DAP/reference0.937190.394
42DAP/reference0.884830.07
43DAP/reference0.971670.44
47DAP/reference0.908520.222
52DAP/reference0.907930.196
57DAP/reference1.178880.061

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.079760.47
17DAP/reference0.906860.116
27DAP/reference0.97280.467
39DAP/reference0.819890.027
41DAP/reference0.810640.038
42DAP/reference0.864220.121
43DAP/reference1.016081
47DAP/reference0.926890.246
52DAP/reference0.885950.015
57DAP/reference0.964880.488

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.092371
17DAP/reference1.003710.855
27DAP/reference0.939470.102
39DAP/reference1.098410.596
41DAP/reference0.990890.682
42DAP/reference0.744910.032
43DAP/reference0.835070.079
47DAP/reference0.887180.097
52DAP/reference0.931240.482
57DAP/reference0.783220.025

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.948711
26DAP/20DAP0.809130.244
34DAP/26DAP0.843830.197
51DAP/34DAP0.902430.274
52DAP/51DAP1.023671
53DAP/52DAP1.137170.261
55DAP/53DAP1.226020.415
57DAP/55DAP1.188590.424
62DAP/57DAP0.845830.162
68DAP/62DAP1.03680.914
68DAP/14DAP0.62080.121

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.949690.422

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.992310.886
Mature Green Tomato/Ripe Tomato3.346830.016
Immature Eggplant/Mature Eggplant1.249980.065
Ripe Pepper/Ripe Tomato3.231870.256
Mature Eggplant/Ripe Tomato4.441460.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.14070.409
1-1-2/M821.003961
12-2/M821.15451
12-4/M820.965361
1-3/M820.894640.501
2-1-1/M820.912660.784
2-1/M820.8971
2-6/M821.052271
3-2/M821.01692
4-1-1/M820.907710.668
4-1/M820.994251
4-3-2/M820.842220.698
4-3/M821.02691
5-3/M821.024441
6-2/M820.832220.444
6-3/M820.72053
7-1/M82N/AN/A
7-2/M821.013961
9-3-2/M820.912831

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.384910.395
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.042641
IL12-4/WTpooled1.038670.695
IL1-4/WTpooled0.86963
WT/WTpooled1.047331

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.971451

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.919860.868
DC3000/delta hrp 6h1.12241
DC3000/delta hrp 12h0.774091
DC3000/delta hrp 24h2.091880.042

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.118830.355
DC3000 delta B/DC3000 delta AB0.982540.892

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.138741
Exp 36h0.690940.449
Exp 60h0.732890.251

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.006631
Var 0h1.050211
Var 12h I row2-row11.236330.22
Var 12h NI row2-row10.760060.443
Var 36h I row2-row10.845220.805
Var 36h NI row2-row11.044631
Var 60h I row2-row11.049250.562
Var 60h NI row2-row11.173060.904
Time course 0hI-0hNI0.98430.962
Time course 12hI-12hNI0.870120.105
Time course 36hI-36hNI0.764320.023
Time course 60hI-60hNI0.730520.026

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.86910.348
transgenic ySAMdc/azygous control (breaker)0.746010.15
transgenic ySAMdc/azygous control (red)0.815021

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.026980.1

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.505040.231

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.022691
Manapal/WT (break)0.780340.333
Manapal/WT (red)0.795860.181