Expression of 1-1-6.3.14.4

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.122020.63
27DAP/17DAP1.491360.57
39DAP/27DAP1.003240.84
41DAP/39DAP0.912910.636
42DAP/41DAP0.924181
43DAP/42DAP1.410510.279
47DAP/43DAP1.199060.438
52DAP/47DAP0.989280.907
57DAP/52DAP0.931520.918

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.126670.188
17DAP/reference1.19110.021
27DAP/reference1.32650.01
39DAP/reference1.035190.615
41DAP/reference1.139930.073
42DAP/reference1.143310.058
43DAP/reference1.137760.064
47DAP/reference1.60210.001
52DAP/reference1.925620.008
57DAP/reference1.196090.052

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.073130.312
27DAP/17DAP1.059930.754
39DAP/27DAP1.05150.558
41DAP/39DAP0.846520.074
42DAP/41DAP1.049220.622
43DAP/42DAP1.000331
47DAP/43DAP0.998821
52DAP/47DAP1.057580.819
57DAP/52DAP0.966870.678
57DAP/7DAP1.082791

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.123080.257
17DAP/reference0.947310.144
27DAP/reference0.965160.283
39DAP/reference1.434290.01
41DAP/reference0.958160.412
42DAP/reference1.293150.016
43DAP/reference1.176210.14
47DAP/reference1.201660.161
52DAP/reference1.427450.046
57DAP/reference1.115750.5

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.316440.064
17DAP/reference1.488530.049
27DAP/reference1.113130.471
39DAP/reference1.229180.124
41DAP/reference1.424270.046
42DAP/reference1.134870.359
43DAP/reference1.348850.035
47DAP/reference1.009210.833
52DAP/reference1.180890.223
57DAP/reference1.381860.027

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.040560.846
17DAP/reference0.97890.696
27DAP/reference0.822440.04
39DAP/reference1.037880.546
41DAP/reference0.953520.331
42DAP/reference0.940520.361
43DAP/reference0.937310.143
47DAP/reference1.379060.02
52DAP/reference1.176280.575
57DAP/reference3.436960.008

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.010811
26DAP/20DAP1.002841
34DAP/26DAP0.959440.857
51DAP/34DAP1.040520.73
52DAP/51DAP1.010040.939
53DAP/52DAP1.002471
55DAP/53DAP0.998640.939
57DAP/55DAP1.023911
62DAP/57DAP1.02610.935
68DAP/62DAP0.896570.7
68DAP/14DAP0.703020.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.089620.229

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.683340.187
Mature Green Tomato/Ripe Tomato0.721880.03
Immature Eggplant/Mature Eggplant0.972560.912
Ripe Pepper/Ripe Tomato0.470880.293
Mature Eggplant/Ripe Tomato0.30880.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.721250.499
1-1-2/M821.140181
12-2/M820.772910.955
12-4/M820.73940.619
1-3/M821.76737
2-1-1/M820.57485
2-1/M820.538550.322
2-6/M820.815270.501
3-2/M820.800570.455
4-1-1/M820.8381
4-1/M821.343771
4-3-2/M820.912261
4-3/M820.565670.578
5-3/M821.187811
6-2/M820.41332
6-3/M821.025181
7-1/M820.861710.803
7-2/M820.889740.881
9-3-2/M821.098261

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.353570.365
IL2-6/WTpooled1.000691
IL7-5/WTpooled1.51323
IL7-3/WTpooled0.755420.418
IL12-4/WTpooled1.052830.522
IL1-4/WTpooled1.021871
WT/WTpooled0.983081

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.013461

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.016671
DC3000/delta hrp 6h0.879320.95
DC3000/delta hrp 12h1.256691
DC3000/delta hrp 24h0.893550.371

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.862380.057
DC3000 delta B/DC3000 delta AB0.984520.936

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.065881
Exp 36h0.947210.879
Exp 60h1.020821

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.985111
Var 0h0.948171
Var 12h I row2-row10.857620.39
Var 12h NI row2-row10.983780.906
Var 36h I row2-row10.904030.805
Var 36h NI row2-row11.15391
Var 60h I row2-row11.119391
Var 60h NI row2-row11.001471
Time course 0hI-0hNI1.020020.852
Time course 12hI-12hNI1.020670.788
Time course 36hI-36hNI0.85660.166
Time course 60hI-60hNI0.71680.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.895910.267
transgenic ySAMdc/azygous control (breaker)1.088041
transgenic ySAMdc/azygous control (red)0.765111

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.18040.036

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.858960.268

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.030291
Manapal/WT (break)1.087351
Manapal/WT (red)1.341861