Expression of 1-1-6.3.14.8
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.13168 | 0.838 |
27DAP/17DAP | 2.28435 | 0.353 |
39DAP/27DAP | 2.93284 | 0.215 |
41DAP/39DAP | 1.15887 | 0.89 |
42DAP/41DAP | 1.10684 | 0.945 |
43DAP/42DAP | 1.06587 | 1 |
47DAP/43DAP | 1.34322 | 0.415 |
52DAP/47DAP | 0.5887 | 0.098 |
57DAP/52DAP | 1.14653 | 1 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.40163 | 0.024 |
17DAP/reference | 0.45524 | 0.007 |
27DAP/reference | 0.51683 | 0.011 |
39DAP/reference | 0.46046 | 0.007 |
41DAP/reference | 0.51881 | 0.008 |
42DAP/reference | 0.56729 | 0.001 |
43DAP/reference | 1.06193 | 0.569 |
47DAP/reference | 0.5763 | 0.001 |
52DAP/reference | 0.56337 | 0.012 |
57DAP/reference | 0.69126 | 0.021 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.9464 | 0.578 |
27DAP/17DAP | 1.31173 | 0.554 |
39DAP/27DAP | 2.22357 | 0.081 |
41DAP/39DAP | 3.03032 | 0.005 |
42DAP/41DAP | 0.91519 | 0.478 |
43DAP/42DAP | 0.3678 | 0.022 |
47DAP/43DAP | 1.95806 | 0.011 |
52DAP/47DAP | 0.97982 | 0.905 |
57DAP/52DAP | 1.07719 | 0.845 |
57DAP/7DAP | 1.11724 | 0.365 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.61047 | 0.058 |
17DAP/reference | 0.63405 | 0.013 |
27DAP/reference | 0.77551 | 0.037 |
39DAP/reference | 0.60041 | 0.012 |
41DAP/reference | 0.51576 | 0.011 |
42DAP/reference | 0.62362 | 0.01 |
43DAP/reference | 0.57233 | 0.013 |
47DAP/reference | 0.75534 | 0.222 |
52DAP/reference | 0.67957 | 0.013 |
57DAP/reference | 0.62037 | 0.007 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.49762 | 0.007 |
17DAP/reference | 0.41751 | 0.003 |
27DAP/reference | 0.50722 | 0.006 |
39DAP/reference | 0.63031 | 0.011 |
41DAP/reference | 0.65094 | 0.011 |
42DAP/reference | 0.70218 | 0.022 |
43DAP/reference | 0.66335 | 0.035 |
47DAP/reference | 0.68289 | 0.011 |
52DAP/reference | 0.41394 | 0.004 |
57DAP/reference | 0.60916 | 0.003 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.48808 | 0.018 |
17DAP/reference | 0.64523 | 0.097 |
27DAP/reference | 0.63974 | 0.024 |
39DAP/reference | 0.6888 | 0.011 |
41DAP/reference | 0.77198 | 0.028 |
42DAP/reference | 0.67169 | 0.025 |
43DAP/reference | 0.60576 | 0.016 |
47DAP/reference | 0.65514 | 0.014 |
52DAP/reference | 0.62208 | 0.055 |
57DAP/reference | 0.96642 | 0.491 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.07274 | 1 |
26DAP/20DAP | 0.85767 | 0.512 |
34DAP/26DAP | 1.23509 | 0.114 |
51DAP/34DAP | 0.86234 | 0.747 |
52DAP/51DAP | 0.85075 | 1 |
53DAP/52DAP | 0.78244 | 0.386 |
55DAP/53DAP | 1.16881 | 0.893 |
57DAP/55DAP | 0.97416 | 0.817 |
62DAP/57DAP | 1.13434 | 1 |
68DAP/62DAP | 1.82534 | 0.21 |
68DAP/14DAP | 1.57521 | 0.2 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 4.23406 | 0.023 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.24173 | 0.062 |
Mature Green Tomato/Ripe Tomato | 1.34539 | 0.237 |
Immature Eggplant/Mature Eggplant | 3.42746 | 0.05 |
Ripe Pepper/Ripe Tomato | 2.99643 | 1 |
Mature Eggplant/Ripe Tomato | 0.40684 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.73612 | 0.883 |
1-1-2/M82 | 0.85334 | 1 |
12-2/M82 | 0.91602 | 0.955 |
12-4/M82 | 1.01708 | 1 |
1-3/M82 | 2.02693 | |
2-1-1/M82 | 0.64985 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.92221 | 1 |
3-2/M82 | 1.4212 | 0.84 |
4-1-1/M82 | 1.44312 | 1 |
4-1/M82 | 0.9135 | |
4-3-2/M82 | 0.45149 | 0.698 |
4-3/M82 | 0.92856 | 1 |
5-3/M82 | 1.50944 | 0.572 |
6-2/M82 | 4.12953 | 0.235 |
6-3/M82 | 0.87825 | 1 |
7-1/M82 | 0.80562 | |
7-2/M82 | 1.40012 | 0.318 |
9-3-2/M82 | 0.68564 | 0.355 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.1418 | 0.788 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.88008 | 1 |
IL12-4/WTpooled | 1.23589 | 0.52 |
IL1-4/WTpooled | 0.96481 | |
WT/WTpooled | 1.09357 | 0.999 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.20151 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.10863 | 0.823 |
DC3000/delta hrp 6h | 1.03346 | 1 |
DC3000/delta hrp 12h | 1.11504 | 1 |
DC3000/delta hrp 24h | 1.87462 | 0.028 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 2.45285 | 0.049 |
DC3000 delta B/DC3000 delta AB | 4.4541 | 0.019 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.92824 | 0.254 |
Exp 36h | 2.14553 | 0.489 |
Exp 60h | 2.76211 | 0.227 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.03992 | 1 |
Var 0h | 1.10652 | 0.421 |
Var 12h I row2-row1 | 0.90094 | 0.77 |
Var 12h NI row2-row1 | 2.02395 | 0.649 |
Var 36h I row2-row1 | 1.50173 | 0.41 |
Var 36h NI row2-row1 | 0.56216 | 0.478 |
Var 60h I row2-row1 | 0.89768 | 0.374 |
Var 60h NI row2-row1 | 0.59023 | 0.297 |
Time course 0hI-0hNI | 1.38512 | 0.537 |
Time course 12hI-12hNI | 1.19737 | 0.56 |
Time course 36hI-36hNI | 3.64245 | 0.004 |
Time course 60hI-60hNI | 73.2091 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.26224 | 0.571 |
transgenic ySAMdc/azygous control (breaker) | 0.97723 | 1 |
transgenic ySAMdc/azygous control (red) | 0.81493 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.98032 | 0.143 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.71195 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.78253 | 0.307 |
Manapal/WT (break) | 2.15783 | 0.381 |
Manapal/WT (red) | 0.92704 | 0.728 |
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