Expression of 1-1-6.3.14.8

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.131680.838
27DAP/17DAP2.284350.353
39DAP/27DAP2.932840.215
41DAP/39DAP1.158870.89
42DAP/41DAP1.106840.945
43DAP/42DAP1.065871
47DAP/43DAP1.343220.415
52DAP/47DAP0.58870.098
57DAP/52DAP1.146531

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.401630.024
17DAP/reference0.455240.007
27DAP/reference0.516830.011
39DAP/reference0.460460.007
41DAP/reference0.518810.008
42DAP/reference0.567290.001
43DAP/reference1.061930.569
47DAP/reference0.57630.001
52DAP/reference0.563370.012
57DAP/reference0.691260.021

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.94640.578
27DAP/17DAP1.311730.554
39DAP/27DAP2.223570.081
41DAP/39DAP3.030320.005
42DAP/41DAP0.915190.478
43DAP/42DAP0.36780.022
47DAP/43DAP1.958060.011
52DAP/47DAP0.979820.905
57DAP/52DAP1.077190.845
57DAP/7DAP1.117240.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.610470.058
17DAP/reference0.634050.013
27DAP/reference0.775510.037
39DAP/reference0.600410.012
41DAP/reference0.515760.011
42DAP/reference0.623620.01
43DAP/reference0.572330.013
47DAP/reference0.755340.222
52DAP/reference0.679570.013
57DAP/reference0.620370.007

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.497620.007
17DAP/reference0.417510.003
27DAP/reference0.507220.006
39DAP/reference0.630310.011
41DAP/reference0.650940.011
42DAP/reference0.702180.022
43DAP/reference0.663350.035
47DAP/reference0.682890.011
52DAP/reference0.413940.004
57DAP/reference0.609160.003

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.488080.018
17DAP/reference0.645230.097
27DAP/reference0.639740.024
39DAP/reference0.68880.011
41DAP/reference0.771980.028
42DAP/reference0.671690.025
43DAP/reference0.605760.016
47DAP/reference0.655140.014
52DAP/reference0.622080.055
57DAP/reference0.966420.491

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.072741
26DAP/20DAP0.857670.512
34DAP/26DAP1.235090.114
51DAP/34DAP0.862340.747
52DAP/51DAP0.850751
53DAP/52DAP0.782440.386
55DAP/53DAP1.168810.893
57DAP/55DAP0.974160.817
62DAP/57DAP1.134341
68DAP/62DAP1.825340.21
68DAP/14DAP1.575210.2

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker4.234060.023

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.241730.062
Mature Green Tomato/Ripe Tomato1.345390.237
Immature Eggplant/Mature Eggplant3.427460.05
Ripe Pepper/Ripe Tomato2.996431
Mature Eggplant/Ripe Tomato0.406841

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.736120.883
1-1-2/M820.853341
12-2/M820.916020.955
12-4/M821.017081
1-3/M822.02693
2-1-1/M820.64985
2-1/M82N/AN/A
2-6/M820.922211
3-2/M821.42120.84
4-1-1/M821.443121
4-1/M820.9135
4-3-2/M820.451490.698
4-3/M820.928561
5-3/M821.509440.572
6-2/M824.129530.235
6-3/M820.878251
7-1/M820.80562
7-2/M821.400120.318
9-3-2/M820.685640.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.14180.788
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.880081
IL12-4/WTpooled1.235890.52
IL1-4/WTpooled0.96481
WT/WTpooled1.093570.999

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.201511

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.108630.823
DC3000/delta hrp 6h1.033461
DC3000/delta hrp 12h1.115041
DC3000/delta hrp 24h1.874620.028

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB2.452850.049
DC3000 delta B/DC3000 delta AB4.45410.019

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.928240.254
Exp 36h2.145530.489
Exp 60h2.762110.227

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.039921
Var 0h1.106520.421
Var 12h I row2-row10.900940.77
Var 12h NI row2-row12.023950.649
Var 36h I row2-row11.501730.41
Var 36h NI row2-row10.562160.478
Var 60h I row2-row10.897680.374
Var 60h NI row2-row10.590230.297
Time course 0hI-0hNI1.385120.537
Time course 12hI-12hNI1.197370.56
Time course 36hI-36hNI3.642450.004
Time course 60hI-60hNI73.20910.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.262240.571
transgenic ySAMdc/azygous control (breaker)0.977231
transgenic ySAMdc/azygous control (red)0.814931

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.980320.143

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.711950.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.782530.307
Manapal/WT (break)2.157830.381
Manapal/WT (red)0.927040.728