Expression of 1-1-6.3.17.11

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.718680.038
27DAP/17DAP1.162970.859
39DAP/27DAP1.619330.206
41DAP/39DAP0.876880.563
42DAP/41DAP1.027661
43DAP/42DAP1.055291
47DAP/43DAP0.614380.117
52DAP/47DAP1.298130.528
57DAP/52DAP0.887470.79

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.738170.081
17DAP/reference1.002010.957
27DAP/reference1.219810.139
39DAP/reference0.960810.261
41DAP/reference1.125670.421
42DAP/reference1.418710.001
43DAP/reference1.051430.838
47DAP/reference1.302590.003
52DAP/reference1.711890.015
57DAP/reference1.580420.04

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.847060.135
27DAP/17DAP0.957070.878
39DAP/27DAP0.980580.932
41DAP/39DAP1.264590.049
42DAP/41DAP0.895740.224
43DAP/42DAP1.203710.017
47DAP/43DAP0.975940.857
52DAP/47DAP0.973730.901
57DAP/52DAP0.993350.848
57DAP/7DAP0.75049

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.170430.241
17DAP/reference1.007191
27DAP/reference1.038740.246
39DAP/reference1.026070.511
41DAP/reference1.167220.05
42DAP/reference1.219430.009
43DAP/reference1.338830.02
47DAP/reference1.420980.047
52DAP/reference1.378610.019
57DAP/reference1.132660.094

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.151190.612
17DAP/reference1.497140.055
27DAP/reference1.291560.053
39DAP/reference1.41550.014
41DAP/reference1.558290.006
42DAP/reference1.416620.01
43DAP/reference1.234110.199
47DAP/reference1.521910.03
52DAP/reference1.379730.012
57DAP/reference1.153620.229

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.218270.032
17DAP/reference1.098780.261
27DAP/reference0.98260.566
39DAP/reference1.112260.104
41DAP/reference0.971610.371
42DAP/reference1.205610.194
43DAP/reference1.147550.355
47DAP/reference1.225910.055
52DAP/reference0.831110.268
57DAP/reference1.353460.184

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.961261
26DAP/20DAP1.320590.149
34DAP/26DAP0.941450.841
51DAP/34DAP0.952020.727
52DAP/51DAP1.091370.304
53DAP/52DAP1.083460.738
55DAP/53DAP0.987310.876
57DAP/55DAP0.913710.619
62DAP/57DAP1.057131
68DAP/62DAP0.981960.863
68DAP/14DAP1.520610.384

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.895120.102

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.719050.042
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.76142
Mature Eggplant/Ripe Tomato1.313520.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.047741
1-1-2/M821.127351
12-2/M821.169391
12-4/M821.017191
1-3/M821.299981
2-1-1/M820.97877
2-1/M82N/AN/A
2-6/M820.951351
3-2/M820.99522
4-1-1/M821.009851
4-1/M821.007531
4-3-2/M821.101911
4-3/M821.136811
5-3/M821.098931
6-2/M821.124561
6-3/M821.027951
7-1/M821.100430.539
7-2/M821.14650.318
9-3-2/M821.131

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.72117
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.053391
IL12-4/WTpooled1.17120.553
IL1-4/WTpooled1.15545
WT/WTpooled0.9367

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.944711

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.187290.692
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.162361
DC3000/delta hrp 24h0.993971

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.928390.841
DC3000 delta B/DC3000 delta AB1.003011

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.998461
Var 0h0.326831
Var 12h I row2-row11.027010.235
Var 12h NI row2-row10.955840.494
Var 36h I row2-row11.048710.339
Var 36h NI row2-row10.877080.378
Var 60h I row2-row11.112420.543
Var 60h NI row2-row11.054240.904
Time course 0hI-0hNI1.052070.764
Time course 12hI-12hNI1.082230.313
Time course 36hI-36hNI1.125290.017
Time course 60hI-60hNI1.449940.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.923070.614
transgenic ySAMdc/azygous control (breaker)0.702740.173
transgenic ySAMdc/azygous control (red)0.939151

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.008861

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.84531
Manapal/WT (break)0.880731
Manapal/WT (red)0.781530.183