Expression of 1-1-6.3.17.11
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.71868 | 0.038 |
27DAP/17DAP | 1.16297 | 0.859 |
39DAP/27DAP | 1.61933 | 0.206 |
41DAP/39DAP | 0.87688 | 0.563 |
42DAP/41DAP | 1.02766 | 1 |
43DAP/42DAP | 1.05529 | 1 |
47DAP/43DAP | 0.61438 | 0.117 |
52DAP/47DAP | 1.29813 | 0.528 |
57DAP/52DAP | 0.88747 | 0.79 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.73817 | 0.081 |
17DAP/reference | 1.00201 | 0.957 |
27DAP/reference | 1.21981 | 0.139 |
39DAP/reference | 0.96081 | 0.261 |
41DAP/reference | 1.12567 | 0.421 |
42DAP/reference | 1.41871 | 0.001 |
43DAP/reference | 1.05143 | 0.838 |
47DAP/reference | 1.30259 | 0.003 |
52DAP/reference | 1.71189 | 0.015 |
57DAP/reference | 1.58042 | 0.04 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.84706 | 0.135 |
27DAP/17DAP | 0.95707 | 0.878 |
39DAP/27DAP | 0.98058 | 0.932 |
41DAP/39DAP | 1.26459 | 0.049 |
42DAP/41DAP | 0.89574 | 0.224 |
43DAP/42DAP | 1.20371 | 0.017 |
47DAP/43DAP | 0.97594 | 0.857 |
52DAP/47DAP | 0.97373 | 0.901 |
57DAP/52DAP | 0.99335 | 0.848 |
57DAP/7DAP | 0.75049 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.17043 | 0.241 |
17DAP/reference | 1.00719 | 1 |
27DAP/reference | 1.03874 | 0.246 |
39DAP/reference | 1.02607 | 0.511 |
41DAP/reference | 1.16722 | 0.05 |
42DAP/reference | 1.21943 | 0.009 |
43DAP/reference | 1.33883 | 0.02 |
47DAP/reference | 1.42098 | 0.047 |
52DAP/reference | 1.37861 | 0.019 |
57DAP/reference | 1.13266 | 0.094 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.15119 | 0.612 |
17DAP/reference | 1.49714 | 0.055 |
27DAP/reference | 1.29156 | 0.053 |
39DAP/reference | 1.4155 | 0.014 |
41DAP/reference | 1.55829 | 0.006 |
42DAP/reference | 1.41662 | 0.01 |
43DAP/reference | 1.23411 | 0.199 |
47DAP/reference | 1.52191 | 0.03 |
52DAP/reference | 1.37973 | 0.012 |
57DAP/reference | 1.15362 | 0.229 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.21827 | 0.032 |
17DAP/reference | 1.09878 | 0.261 |
27DAP/reference | 0.9826 | 0.566 |
39DAP/reference | 1.11226 | 0.104 |
41DAP/reference | 0.97161 | 0.371 |
42DAP/reference | 1.20561 | 0.194 |
43DAP/reference | 1.14755 | 0.355 |
47DAP/reference | 1.22591 | 0.055 |
52DAP/reference | 0.83111 | 0.268 |
57DAP/reference | 1.35346 | 0.184 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.96126 | 1 |
26DAP/20DAP | 1.32059 | 0.149 |
34DAP/26DAP | 0.94145 | 0.841 |
51DAP/34DAP | 0.95202 | 0.727 |
52DAP/51DAP | 1.09137 | 0.304 |
53DAP/52DAP | 1.08346 | 0.738 |
55DAP/53DAP | 0.98731 | 0.876 |
57DAP/55DAP | 0.91371 | 0.619 |
62DAP/57DAP | 1.05713 | 1 |
68DAP/62DAP | 0.98196 | 0.863 |
68DAP/14DAP | 1.52061 | 0.384 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.89512 | 0.102 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.71905 | 0.042 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.76142 | |
Mature Eggplant/Ripe Tomato | 1.31352 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.04774 | 1 |
1-1-2/M82 | 1.12735 | 1 |
12-2/M82 | 1.16939 | 1 |
12-4/M82 | 1.01719 | 1 |
1-3/M82 | 1.29998 | 1 |
2-1-1/M82 | 0.97877 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.95135 | 1 |
3-2/M82 | 0.99522 | |
4-1-1/M82 | 1.00985 | 1 |
4-1/M82 | 1.00753 | 1 |
4-3-2/M82 | 1.10191 | 1 |
4-3/M82 | 1.13681 | 1 |
5-3/M82 | 1.09893 | 1 |
6-2/M82 | 1.12456 | 1 |
6-3/M82 | 1.02795 | 1 |
7-1/M82 | 1.10043 | 0.539 |
7-2/M82 | 1.1465 | 0.318 |
9-3-2/M82 | 1.13 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.72117 | |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.05339 | 1 |
IL12-4/WTpooled | 1.1712 | 0.553 |
IL1-4/WTpooled | 1.15545 | |
WT/WTpooled | 0.9367 | |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.94471 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.18729 | 0.692 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 1.16236 | 1 |
DC3000/delta hrp 24h | 0.99397 | 1 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.92839 | 0.841 |
DC3000 delta B/DC3000 delta AB | 1.00301 | 1 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99846 | 1 |
Var 0h | 0.32683 | 1 |
Var 12h I row2-row1 | 1.02701 | 0.235 |
Var 12h NI row2-row1 | 0.95584 | 0.494 |
Var 36h I row2-row1 | 1.04871 | 0.339 |
Var 36h NI row2-row1 | 0.87708 | 0.378 |
Var 60h I row2-row1 | 1.11242 | 0.543 |
Var 60h NI row2-row1 | 1.05424 | 0.904 |
Time course 0hI-0hNI | 1.05207 | 0.764 |
Time course 12hI-12hNI | 1.08223 | 0.313 |
Time course 36hI-36hNI | 1.12529 | 0.017 |
Time course 60hI-60hNI | 1.44994 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.92307 | 0.614 |
transgenic ySAMdc/azygous control (breaker) | 0.70274 | 0.173 |
transgenic ySAMdc/azygous control (red) | 0.93915 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.00886 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.8453 | 1 |
Manapal/WT (break) | 0.88073 | 1 |
Manapal/WT (red) | 0.78153 | 0.183 |
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