Expression of 1-1-6.3.18.10
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.93109 | 0.627 |
27DAP/17DAP | 0.99907 | 0.934 |
39DAP/27DAP | 1.11781 | 0.84 |
41DAP/39DAP | 1.6008 | 0.084 |
42DAP/41DAP | 1.12848 | 1 |
43DAP/42DAP | 0.77554 | 0.495 |
47DAP/43DAP | 1.16971 | 0.943 |
52DAP/47DAP | 1.80971 | 0.418 |
57DAP/52DAP | 0.72382 | 0.583 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.9539 | 0.2 |
17DAP/reference | 0.98385 | 0.737 |
27DAP/reference | 0.97302 | 0.538 |
39DAP/reference | 0.99085 | 0.885 |
41DAP/reference | 1.00496 | 1 |
42DAP/reference | 0.9766 | 0.218 |
43DAP/reference | 0.95846 | 0.519 |
47DAP/reference | 0.97136 | 0.258 |
52DAP/reference | 0.91607 | 0.111 |
57DAP/reference | 0.93811 | 0.21 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.78129 | 0.048 |
27DAP/17DAP | 1.42573 | 0.047 |
39DAP/27DAP | 1.23709 | 0.718 |
41DAP/39DAP | 0.88913 | 0.849 |
42DAP/41DAP | 0.88223 | 0.451 |
43DAP/42DAP | 1.37632 | 0.699 |
47DAP/43DAP | 1.08093 | 0.906 |
52DAP/47DAP | 1.61616 | 0.319 |
57DAP/52DAP | 1.03053 | 0.73 |
57DAP/7DAP | 1.05023 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.70698 | 0.157 |
17DAP/reference | 0.82295 | 0.02 |
27DAP/reference | 0.97154 | 0.698 |
39DAP/reference | 0.88303 | 0.264 |
41DAP/reference | 0.90022 | 0.298 |
42DAP/reference | 1.15915 | 0.233 |
43DAP/reference | 1.21305 | 0.124 |
47DAP/reference | 0.77229 | 0.04 |
52DAP/reference | 1.06225 | 1 |
57DAP/reference | 0.83275 | 0.24 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.01848 | 0.712 |
17DAP/reference | 0.98586 | 0.611 |
27DAP/reference | 0.9119 | 0.269 |
39DAP/reference | 0.87697 | 0.022 |
41DAP/reference | 0.92032 | 0.188 |
42DAP/reference | 0.88867 | 0.019 |
43DAP/reference | 0.94968 | 0.37 |
47DAP/reference | 0.91681 | 0.018 |
52DAP/reference | 0.98124 | 0.433 |
57DAP/reference | 1.01851 | 0.827 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.89209 | 0.362 |
17DAP/reference | 0.74901 | 0.182 |
27DAP/reference | 0.84223 | 0.319 |
39DAP/reference | 0.93156 | 0.43 |
41DAP/reference | 0.66904 | 0.293 |
42DAP/reference | 0.63035 | 0.108 |
43DAP/reference | 0.85867 | 0.116 |
47DAP/reference | 0.89404 | 0.041 |
52DAP/reference | 1.02892 | 0.952 |
57DAP/reference | 0.74058 | 0.018 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.97736 | 1 |
26DAP/20DAP | 1.00787 | |
34DAP/26DAP | N/A | N/A |
51DAP/34DAP | 1.09544 | 0.98 |
52DAP/51DAP | N/A | N/A |
53DAP/52DAP | 0.93898 | 0.803 |
55DAP/53DAP | 0.75434 | 0.389 |
57DAP/55DAP | 0.95901 | 0.819 |
62DAP/57DAP | 0.87796 | 0.681 |
68DAP/62DAP | 0.94315 | 0.722 |
68DAP/14DAP | 1.26739 | 0.636 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.76931 | |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.55152 | 0.136 |
Mature Green Tomato/Ripe Tomato | 0.78076 | 0.096 |
Immature Eggplant/Mature Eggplant | 0.59697 | |
Ripe Pepper/Ripe Tomato | 5.24721 | 1 |
Mature Eggplant/Ripe Tomato | 0.81752 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.15116 | 0.742 |
1-1-2/M82 | 0.96412 | 1 |
12-2/M82 | 1.16102 | 1 |
12-4/M82 | 0.86229 | 1 |
1-3/M82 | 1.08401 | 0.26 |
2-1-1/M82 | 1.1718 | |
2-1/M82 | 0.83186 | |
2-6/M82 | 1.04861 | 0.695 |
3-2/M82 | N/A | N/A |
4-1-1/M82 | 1.03676 | 1 |
4-1/M82 | 1.02361 | 1 |
4-3-2/M82 | 0.82296 | |
4-3/M82 | 1.02428 | 1 |
5-3/M82 | 1.02426 | 1 |
6-2/M82 | 0.90594 | 1 |
6-3/M82 | 1.1518 | 1 |
7-1/M82 | N/A | N/A |
7-2/M82 | 1.18761 | 1 |
9-3-2/M82 | 0.86856 | 0.449 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.75321 | |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | 1.13793 | |
IL7-3/WTpooled | 1.34023 | |
IL12-4/WTpooled | 1.0582 | 1 |
IL1-4/WTpooled | 0.93933 | 0.834 |
WT/WTpooled | 0.97805 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.79242 | 0.479 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.06617 | 0.914 |
DC3000/delta hrp 6h | 0.74956 | 0.786 |
DC3000/delta hrp 12h | 0.85217 | 1 |
DC3000/delta hrp 24h | 1.01005 | 0.84 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | 0.96293 | 0.943 |
Exp 60h | 1.41592 | 0.227 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | 0.76892 | 0.457 |
Var 12h I row2-row1 | 0.81189 | 0.565 |
Var 12h NI row2-row1 | 1.14428 | 1 |
Var 36h I row2-row1 | 1.15233 | 1 |
Var 36h NI row2-row1 | 0.72837 | |
Var 60h I row2-row1 | 0.73382 | 0.582 |
Var 60h NI row2-row1 | 0.7515 | 0.63 |
Time course 0hI-0hNI | 0.95199 | |
Time course 12hI-12hNI | 0.95297 | 0.799 |
Time course 36hI-36hNI | 4.26581 | 0.004 |
Time course 60hI-60hNI | 10.8499 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.55005 | 0.863 |
transgenic ySAMdc/azygous control (breaker) | 1.48393 | 1 |
transgenic ySAMdc/azygous control (red) | 1.32027 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.00113 | 1 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.19375 | 0.239 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.35877 | 0.14 |
Manapal/WT (break) | 0.90573 | 1 |
Manapal/WT (red) | 0.89898 | 0.315 |
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