Expression of 1-1-6.3.18.15
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.95875 | 0.728 |
27DAP/17DAP | 1.22945 | 0.783 |
39DAP/27DAP | 0.78906 | 0.544 |
41DAP/39DAP | 0.98666 | 0.791 |
42DAP/41DAP | 0.88731 | 1 |
43DAP/42DAP | 1.11644 | 1 |
47DAP/43DAP | 1.04511 | 0.89 |
52DAP/47DAP | 1.68726 | 0.22 |
57DAP/52DAP | 1.37533 | 0.827 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.89654 | 0.205 |
17DAP/reference | 0.58781 | 0.007 |
27DAP/reference | 0.77805 | 0.057 |
39DAP/reference | 0.77554 | 0.023 |
41DAP/reference | 0.55144 | 0.009 |
42DAP/reference | 0.90326 | 0.103 |
43DAP/reference | 0.7787 | 0.043 |
47DAP/reference | 0.98061 | 0.445 |
52DAP/reference | 1.233 | 0.43 |
57DAP/reference | 1.41724 | 0.011 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.3718 | 0.63 |
27DAP/17DAP | 1.59738 | 0.035 |
39DAP/27DAP | 0.87189 | 0.775 |
41DAP/39DAP | 2.44023 | 0.612 |
42DAP/41DAP | 1.09922 | 0.984 |
43DAP/42DAP | 0.99632 | 1 |
47DAP/43DAP | 0.9595 | 0.855 |
52DAP/47DAP | 1.28352 | 0.517 |
57DAP/52DAP | 1.16878 | 0.417 |
57DAP/7DAP | 1.07704 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.15832 | 0.28 |
17DAP/reference | 1.33804 | 0.123 |
27DAP/reference | 1.22883 | 0.03 |
39DAP/reference | 1.31985 | 0.126 |
41DAP/reference | 1.26065 | 0.057 |
42DAP/reference | 1.3197 | 0.1 |
43DAP/reference | 1.6494 | 0.008 |
47DAP/reference | 1.03146 | 0.745 |
52DAP/reference | 0.97014 | 0.477 |
57DAP/reference | 1.35268 | 0.01 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.95348 | 0.548 |
17DAP/reference | 0.59481 | 0.005 |
27DAP/reference | 0.85236 | 0.079 |
39DAP/reference | 0.97235 | 0.469 |
41DAP/reference | 0.97229 | 0.432 |
42DAP/reference | 0.89986 | 0.042 |
43DAP/reference | 0.69713 | 0.025 |
47DAP/reference | 0.73022 | 0.011 |
52DAP/reference | 0.78357 | 0.006 |
57DAP/reference | 0.62534 | 0.002 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.2266 | 0.258 |
17DAP/reference | 1.00544 | 0.681 |
27DAP/reference | 1.26788 | 0.085 |
39DAP/reference | 1.28844 | 0.211 |
41DAP/reference | 1.23855 | 0.139 |
42DAP/reference | 1.18474 | 0.106 |
43DAP/reference | 1.17219 | 0.16 |
47DAP/reference | 0.80199 | 0.01 |
52DAP/reference | 0.99814 | 0.908 |
57DAP/reference | 1.29593 | 0.164 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.14654 | 0.966 |
26DAP/20DAP | 1.63061 | 0.338 |
34DAP/26DAP | 0.92115 | 0.909 |
51DAP/34DAP | 1.38727 | 0.901 |
52DAP/51DAP | 0.91885 | 1 |
53DAP/52DAP | 1.03875 | 0.96 |
55DAP/53DAP | 1.16965 | 0.806 |
57DAP/55DAP | 0.79137 | 0.386 |
62DAP/57DAP | 0.83272 | 0.28 |
68DAP/62DAP | 4.30589 | 0.071 |
68DAP/14DAP | 3.94395 | 0.021 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.15016 | 0.591 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.43322 | 0.082 |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | 1.76695 | 0.05 |
Ripe Pepper/Ripe Tomato | 1.22045 | 1 |
Mature Eggplant/Ripe Tomato | 0.69973 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 0.93795 | 1 |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.90659 | 0.619 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 0.98575 | 1 |
5-3/M82 | 1.31896 | |
6-2/M82 | N/A | N/A |
6-3/M82 | 0.95571 | |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | N/A | N/A |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.91519 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.29381 | 0.692 |
DC3000/delta hrp 6h | 0.8085 | 0.942 |
DC3000/delta hrp 12h | 1.08105 | 1 |
DC3000/delta hrp 24h | 1.14065 | 0.383 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.33007 | 1 |
Exp 36h | 3.00386 | 0.693 |
Exp 60h | 2.02808 | 0.226 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.14276 | 1 |
Var 0h | 1.01903 | 1 |
Var 12h I row2-row1 | 1.12226 | 0.473 |
Var 12h NI row2-row1 | 0.66345 | |
Var 36h I row2-row1 | 1.88354 | 1 |
Var 36h NI row2-row1 | 1.49902 | |
Var 60h I row2-row1 | 1.02114 | 1 |
Var 60h NI row2-row1 | 1.04705 | 1 |
Time course 0hI-0hNI | 0.9632 | 0.886 |
Time course 12hI-12hNI | 0.86768 | 0.519 |
Time course 36hI-36hNI | 1.17627 | 0.722 |
Time course 60hI-60hNI | 1.38216 | 0.08 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.16825 | 0.212 |
transgenic ySAMdc/azygous control (breaker) | 1.40473 | 0.162 |
transgenic ySAMdc/azygous control (red) | 0.89016 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.57197 | 0.035 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.65331 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.31835 | 0.14 |
Manapal/WT (break) | 0.69673 | 0.333 |
Manapal/WT (red) | 0.74609 | 0.199 |
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