Expression of 1-1-6.3.18.15

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.958750.728
27DAP/17DAP1.229450.783
39DAP/27DAP0.789060.544
41DAP/39DAP0.986660.791
42DAP/41DAP0.887311
43DAP/42DAP1.116441
47DAP/43DAP1.045110.89
52DAP/47DAP1.687260.22
57DAP/52DAP1.375330.827

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.896540.205
17DAP/reference0.587810.007
27DAP/reference0.778050.057
39DAP/reference0.775540.023
41DAP/reference0.551440.009
42DAP/reference0.903260.103
43DAP/reference0.77870.043
47DAP/reference0.980610.445
52DAP/reference1.2330.43
57DAP/reference1.417240.011

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.37180.63
27DAP/17DAP1.597380.035
39DAP/27DAP0.871890.775
41DAP/39DAP2.440230.612
42DAP/41DAP1.099220.984
43DAP/42DAP0.996321
47DAP/43DAP0.95950.855
52DAP/47DAP1.283520.517
57DAP/52DAP1.168780.417
57DAP/7DAP1.077041

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.158320.28
17DAP/reference1.338040.123
27DAP/reference1.228830.03
39DAP/reference1.319850.126
41DAP/reference1.260650.057
42DAP/reference1.31970.1
43DAP/reference1.64940.008
47DAP/reference1.031460.745
52DAP/reference0.970140.477
57DAP/reference1.352680.01

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.953480.548
17DAP/reference0.594810.005
27DAP/reference0.852360.079
39DAP/reference0.972350.469
41DAP/reference0.972290.432
42DAP/reference0.899860.042
43DAP/reference0.697130.025
47DAP/reference0.730220.011
52DAP/reference0.783570.006
57DAP/reference0.625340.002

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.22660.258
17DAP/reference1.005440.681
27DAP/reference1.267880.085
39DAP/reference1.288440.211
41DAP/reference1.238550.139
42DAP/reference1.184740.106
43DAP/reference1.172190.16
47DAP/reference0.801990.01
52DAP/reference0.998140.908
57DAP/reference1.295930.164

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.146540.966
26DAP/20DAP1.630610.338
34DAP/26DAP0.921150.909
51DAP/34DAP1.387270.901
52DAP/51DAP0.918851
53DAP/52DAP1.038750.96
55DAP/53DAP1.169650.806
57DAP/55DAP0.791370.386
62DAP/57DAP0.832720.28
68DAP/62DAP4.305890.071
68DAP/14DAP3.943950.021

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.150160.591

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.433220.082
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature Eggplant1.766950.05
Ripe Pepper/Ripe Tomato1.220451
Mature Eggplant/Ripe Tomato0.699731

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M820.937951
12-2/M82N/AN/A
12-4/M820.906590.619
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M820.985751
5-3/M821.31896
6-2/M82N/AN/A
6-3/M820.95571
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooledN/AN/A
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.915191

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.293810.692
DC3000/delta hrp 6h0.80850.942
DC3000/delta hrp 12h1.081051
DC3000/delta hrp 24h1.140650.383

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.330071
Exp 36h3.003860.693
Exp 60h2.028080.226

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.142761
Var 0h1.019031
Var 12h I row2-row11.122260.473
Var 12h NI row2-row10.66345
Var 36h I row2-row11.883541
Var 36h NI row2-row11.49902
Var 60h I row2-row11.021141
Var 60h NI row2-row11.047051
Time course 0hI-0hNI0.96320.886
Time course 12hI-12hNI0.867680.519
Time course 36hI-36hNI1.176270.722
Time course 60hI-60hNI1.382160.08

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.168250.212
transgenic ySAMdc/azygous control (breaker)1.404730.162
transgenic ySAMdc/azygous control (red)0.890161

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.571970.035

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.653310.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.318350.14
Manapal/WT (break)0.696730.333
Manapal/WT (red)0.746090.199