Expression of 1-1-6.3.18.2

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.837390.452
27DAP/17DAP0.683410.406
39DAP/27DAP1.481150.74
41DAP/39DAP0.685530.185
42DAP/41DAP0.584510.774
43DAP/42DAP1.313490.601
47DAP/43DAP0.825140.41
52DAP/47DAP1.857880.406
57DAP/52DAP1.040310.966

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.147230.441
17DAP/reference1.164920.907
27DAP/reference0.599620.013
39DAP/reference0.854440.234
41DAP/reference0.613590.039
42DAP/reference0.922740.188
43DAP/reference1.102420.73
47DAP/reference0.72280.006
52DAP/reference0.759090.115
57DAP/reference0.908640.435

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP2.328140.508
27DAP/17DAP1.08170.771
39DAP/27DAP0.617010.26
41DAP/39DAP0.815630.53
42DAP/41DAP0.946720.607
43DAP/42DAP1.63143
47DAP/43DAP1.086021
52DAP/47DAP0.76124
57DAP/52DAP1.348410.232
57DAP/7DAP1.44951

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.721510.055
17DAP/referenceN/AN/A
27DAP/reference1.447280.551
39DAP/referenceN/AN/A
41DAP/reference2.596790.159
42DAP/reference1.112420.405
43DAP/referenceN/AN/A
47DAP/referenceN/AN/A
52DAP/reference0.85612
57DAP/reference0.61777

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.4331
17DAP/reference0.849010.389
27DAP/reference1.337230.79
39DAP/reference0.90561
41DAP/referenceN/AN/A
42DAP/reference1.018420.534
43DAP/reference0.77620.385
47DAP/reference1.030090.77
52DAP/reference0.920250.5
57DAP/reference0.360020.012

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.337660.041
17DAP/reference0.55075
27DAP/referenceN/AN/A
39DAP/referenceN/AN/A
41DAP/reference2.211490.022
42DAP/reference1.61571
43DAP/reference2.34080.145
47DAP/reference0.77761
52DAP/reference1.55012
57DAP/reference2.22117

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.558150.966
26DAP/20DAPN/AN/A
34DAP/26DAP1.313640.954
51DAP/34DAP1.0702
52DAP/51DAP0.81711
53DAP/52DAP1.467050.594
55DAP/53DAP1.885910.039
57DAP/55DAP1.168781
62DAP/57DAP1.058841
68DAP/62DAP0.64659
68DAP/14DAP0.693461

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.455590.019

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.985151
IL2-6/WTpooled0.988341
IL7-5/WTpooled0.869191
IL7-3/WTpooled0.788850.298
IL12-4/WTpooled0.98281
IL1-4/WTpooled0.865020.457
WT/WTpooled1.02441

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0hN/AN/A
DC3000/delta hrp 6h1.012580.95
DC3000/delta hrp 12h0.995451
DC3000/delta hrp 24hN/AN/A

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.132531
Exp 36h0.734360.623
Exp 60h0.521780.278

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h1.074690.197
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row17.87057
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)N/AN/A